Sequence of DPV Potato yellow vein virus

Potato yellow vein virus clone 3117c coat protein (cp) gene, complete cds.

ACC No: JF718293

Dated: 2011-05-01 | Length: 768 | CRC: 1857104008

                
ID   JF718293; SV 1; linear; genomic RNA; STD; VRL; 768 BP.
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AC   JF718293;
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DT   01-MAY-2011 (Rel. 108, Created)
DT   01-MAY-2011 (Rel. 108, Last updated, Version 1)
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DE   Potato yellow vein virus clone 3117c coat protein (cp) gene, complete cds.
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KW   .
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OS   Potato yellow vein virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC   Crinivirus.
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RN   [1]
RP   1-768
RA   Rodriguez-Burgos P., Chaves G., Franco-Lara L., Guzman-Barney M.;
RT   "Low molecular variability of Potato yellow vein virus (PYVV) isolates of
RT   Solanum phureja and Solanum tuberosum from Colombia";
RL   Phytopathology 100(6):S176-S176(2010).
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RN   [2]
RP   1-768
RA   Rodriguez-Burgos P., Franco-Lara L., Guzman-Barney M.;
RT   ;
RL   Submitted (20-MAR-2011) to the EMBL/GenBank/DDBJ databases.
RL   Biotechnology Institute, National University of Colombia, Carrera 30 45-03,
RL   Bogota 111321, Colombia
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FH   Key             Location/Qualifiers
FH
FT   source          1. .768
FT                   /organism="Potato yellow vein virus"
FT                   /host="Solanum phureja"
FT                   /isolate="3117"
FT                   /mol_type="genomic RNA"
FT                   /country="Colombia:Narino-Puerres"
FT                   /collection_date="Nov-2008"
FT                   /identified_by="P. Rodriguez-Burgos"
FT                   /clone="3117c"
FT                   /db_xref="taxon:103881"
FT   gene            1. .768
FT                   /gene="cp"
FT   CDS             1. .768
FT                   /codon_start=1
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /protein_id="AEC22839.1"
FT                   /translation="MDPHGNPIVEPESSNSPESAGVSFTDSQKPPVDRKVKDDSYNLDL
FT                   LISNVGRRDDIISPDDMSLDKLSKIQVRADRGDVLNDEDKLIFEGCLKNFCKRLTGVDP
FT                   DPETFLGFFMSVAQMSLNQSTSVKNRKNLQLKNYLKIGDKEYVWKTADLLNYLSGQFPN
FT                   KSNPLRQYMRLCENQIEMLKSSGKIVSDGHLAAKHGTTSQYFSSVGDYVNGSKTNISDD
FT                   DLTANYLFKNAATKSTKKTKSIYNVAQLAGSIE"
XX
SQ   Sequence 768 BP; 250 A; 128 C; 163 G; 227 T; 0 other;

jf718293 Length: 768  01-MAY-2011  Type: N  Check: 6791  ..

       1  atggatcctc atggaaatcc gatcgtggaa cctgagtcaa gtaattcccc
      51  tgagtctgca ggtgtgtcat ttaccgattc acaaaaacct cctgtagatc
     101  ggaaagtaaa agatgactcg tacaatttag atctcttgat ctccaatgtt
     151  gggagacggg atgatattat atctcctgat gatatgagtc ttgataaact
     201  ttcaaagatt caggttagag cagacagagg agatgtcttg aacgatgaag
     251  acaaattaat ctttgaaggt tgtttgaaga acttttgcaa aagattgact
     301  ggagttgatc cagatcctga gacctttctt gggttcttca tgagtgtagc
     351  tcagatgtca ttaaatcaat ctacttctgt taaaaacaga aagaatctcc
     401  agttgaagaa ttatttaaaa ataggagata aagaatatgt ttggaagacc
     451  gccgacttgt tgaattactt gtctggacag tttccgaata agagtaatcc
     501  actgagacaa tatatgagat tgtgcgagaa tcaaattgaa atgctgaaat
     551  cttctggtaa gatagtcagt gatggtcatc tcgctgccaa acatggtacg
     601  acctctcagt atttctcgtc agtcggagat tatgtcaatg gttcgaaaac
     651  caacatttct gatgatgatt tgactgcaaa ttacctgttc aagaatgcag
     701  caactaagag tactaagaag acaaaatcaa tttataatgt cgctcaatta
     751  gcaggatcta ttgagtag