Sequence of DPV Tomato interveinal chlorosis virus
Tomato interveinal chlorosis virus isolate PE[BR:BSF2729:04] segment DNA-A, complete sequence.
ACC No: JF803253
Dated: 2012-04-05 | Length: 2617 | CRC: -1429055893
ID JF803253; SV 1; circular; genomic DNA; STD; VRL; 2617 BP.
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AC JF803253;
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DT 10-OCT-2011 (Rel. 110, Created)
DT 05-APR-2012 (Rel. 112, Last updated, Version 3)
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DE Tomato interveinal chlorosis virus isolate PE[BR:BSF2729:04] segment DNA-A,
DE complete sequence.
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KW .
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OS Tomato interveinal chlorosis virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2617
RX DOI; 10.1007/s00705-011-1213-7.
RX PUBMED; 22218964.
RA Albuquerque L.C., Varsani A., Fernandes F.R., Pinheiro B., Martin D.P.,
RA de Tarso Oliveira Ferreira P., Lemos T.O., Inoue-Nagata A.K.;
RT "Further characterization of tomato-infecting begomoviruses in Brazil";
RL Arch. Virol. 157(4):747-752(2012).
XX
RN [2]
RP 1-2617
RA Albuquerque L.C., Varsani A., Pinheiro B., Fernandes F.R., Martins D.P.,
RA Ferreira P.T.O., Lemos T.O., Inoue-Nagata A.K.;
RT ;
RL Submitted (13-APR-2011) to the INSDC.
RL Virology, Embrapa Vegetables, Km 09, BR060, Brasilia, DF 70359-970, Brazil
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FH Key Location/Qualifiers
FH
FT source 1. .2617
FT /organism="Tomato interveinal chlorosis virus"
FT /segment="DNA-A"
FT /host="Solanum lycopersicum"
FT /isolate="PE[BR:BSF2729:04]"
FT /mol_type="genomic DNA"
FT /country="Brazil:Pernambuco"
FT /collection_date="2004"
FT /clone="2729"
FT /note="acronym: ToICV"
FT /db_xref="taxon:1089387"
FT CDS 188. .943
FT /codon_start=1
FT /product="V1"
FT /note="CP"
FT /db_xref="GOA:G4XFS9"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:G4XFS9"
FT /protein_id="AEP82976.1"
FT /translation="MPKRDAPWRHMAGTSKISRSANYSPRAGVGPRPSKASEWVNRPMY
FT RKPRIYRMYRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCVSDVTRGNGITHRVGKRF
FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT KNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWRVNNHVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSITN"
FT CDS complement(940. .1338)
FT /codon_start=1
FT /product="C3"
FT /note="REn"
FT /db_xref="GOA:G4XFT0"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:G4XFT0"
FT /protein_id="AEP82977.1"
FT /translation="MDSRTGERITAHQAENGVYTWEISNPLYFKMYNVEDLLYTRTRVY
FT HVQIRFNHNLRRVLGLHKAYLNFQVWTTSLRASGMTYLSRFKFLVQLYLDQLGVISVNN
FT VIRAVRFATDKSYVHDVLENHSIKFKIY"
FT CDS complement(1085. .1477)
FT /codon_start=1
FT /product="C2"
FT /note="Trap"
FT /db_xref="GOA:G4XFT1"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:G4XFT1"
FT /protein_id="AEP82978.1"
FT /translation="MRNSSFSTPPSIKVQHRAAKKKRATRRRRIDLQCGCSIYVHIHCA
FT GHGFTHRGTHHCTSGREWRVYLGDIKSPLFQDVQCGGPTLHEDESLPRPDTVQPQPAES
FT VGSPQGLSELPSLDDIPESFWDDIFK"
FT CDS complement(1419. .2474)
FT /codon_start=1
FT /product="C1"
FT /note="Rep"
FT /db_xref="GOA:G4XFT2"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:G4XFT2"
FT /protein_id="AEP82979.1"
FT /translation="MPLPKRFRLNAKNYFLTYPKCSLSKEEALSQLLALTIPVNKLFIR
FT VARELHEDGQPHLHVLIQFEGKYQCTNERLFDLVSPTRSAHFHPNIQAAKSSSDVKAYV
FT EKDGDFVDHGVFQIDGRSARGGQQSANDTYAKVLNAGSVMEALNILKEEQPKDYVLQHH
FT NIRSNLERIFAKAPEPWVPPFPLSSFTNVPVEMQSWADDYFGRDPAARPERPISIIIEG
FT DSRTGKTMWARALGSHNYLSGHLDFNSKVYSNDVQYNVIDDVAPHYLKLKHWKELIGAQ
FT RDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKYFLDKEENSALNNWTKHNAQFVFLN
FT SPLYQSSTSGS"
FT CDS complement(2024. .2317)
FT /codon_start=1
FT /product="C4"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:G4XFT3"
FT /protein_id="AEP82980.1"
FT /translation="MGNLICTSSYSSKENTSARTNDCSTLYPQQGQHISIRTFRQLRAR
FT QMSRHTWRKTETSLIMEFSRSMEDQLEEVSNLPTTRMPRSLTQDQSWRPSIY"
XX
SQ Sequence 2617 BP; 693 A; 554 C; 610 G; 760 T; 0 other;
jf803253 Length: 2617 05-APR-2012 Type: N Check: 2292 ..
1 accggatggc cgcgaaaaaa tttggacctg ggccgctttt attgggcccg
51 ctctctttat tgattgaaag taatgtgtgg cccaaccatg ttaagtctga
101 cgagcttaga tatttgaaac tacttagcgc ccaagttgta taacggctat
151 aaattgcaca tgattatgac gataacttta attcaaaatg cctaagcgcg
201 atgccccatg gcgccacatg gcagggacgt ctaagattag ccgttccgct
251 aattattctc ctcgtgcagg agttgggcca cgacccagca aggcctccga
301 atgggttaac aggcctatgt acaggaagcc caggatatat cggatgtata
351 ggacccccga tgttccaaga ggttgtgaag gcccatgtaa agtccagtct
401 tacgagcagc gtcacgatat atcccatgtt ggtaaggtga tgtgtgtgtc
451 ggacgtgaca agaggtaatg gtattaccca ccgtgtagga aagcgttttt
501 gtgttaagtc tgtttatatt ttaggtaaga tatggatgga cgagaatatc
551 aagttgaaga accacaccaa cagtgttatg ttttggctgg tcagagaccg
601 tagaccctat ggtactccta tggactttgg ccaagttttt aacatgtttg
651 acaatgagcc cagtactgcc acggtcaaga acgatcttcg tgatcgttac
701 caagttatgc ataaattcta tgctaaggtg acaggtggac aatacgcaag
751 caatgaacaa gcgctggtga agcgtttttg gagggtcaac aatcacgtgg
801 tgtacaatca tcaagaagct gggaaatacg agaatcatac ggagaacgca
851 ttattattgt atatggcatg tactcatgcc tcgaaccctg tgtatgcgac
901 attaaaaatt cggatctatt tttatgattc gataacaaat taataaattt
951 tgaattttat tgaatgattc tcaagtacat catggacgta tgatttgtct
1001 gttgcgaaac gaacagctct aattacatta ttaactgaaa taacgcctaa
1051 ttgatctaga tacaactgaa caagaaattt aaatctactt aaatatgtca
1101 tcccagaagc tctcagggat gtcgtccaaa cttggaagtt cagataagcc
1151 ttgtggagac ccaacactct ccgcaggttg tggttgaacc gtatctggac
1201 gtggtagact ctcgtcctcg tgtagagtag gtcctccaca ttgtacatct
1251 tgaaataaag gggatttgat atctcccagg tatacacgcc attctctgcc
1301 tgatgtgcag tgatgcgttc ccctgtgcgt gaatccatgc cctgcgcagt
1351 ggatgtggac gtatatggag cacccgcact gtagatcaat tcgtcttcgt
1401 cgtgttgccc tcttcttttt agctgcccga tgttgaactt tgatagaggg
1451 gggagttgag aaagacgaat tgcgcattgt gctttgtcca attatttaat
1501 gctgagtttt cctctttgtc gaggaaatat ttataactgg ccccctcgcc
1551 aggattgcaa agcacgatgc atgggatacc gcctttaatt tgaactggct
1601 tgccgtactt gcagtttgat tgccagtccc tttgggcccc gataagttct
1651 ttccagtgct ttaactttag atagtgcggt gcgacatcat caatgacgtt
1701 atactgcaca tcgtttgaat acacctttga attaaaatcg aggtgaccgc
1751 tcaagtaatt gtgggaccct aatgcacgtg cccacatggt cttccctgtc
1801 cttgaatcac cctcgattat tatactgata ggcctctccg gccgcgcagc
1851 gggatccctt ccgaaatagt catctgccca agattgcatc tcgacaggca
1901 cgttagtgaa cgacgagagg ggaaacggag gaacccacgg ttctggagcc
1951 tttgcaaata tacgctctaa atttgaacga atattatgat gctgaagaac
2001 gtaatctttt ggttgttcct cctttaatat attgagggcc tccatgactg
2051 atcctgcgtt aaggaccttg gcatacgtgt cgttggcaga ttgctgacct
2101 cctctagctg atcttccatc gatctggaaa actccatgat caacgaagtc
2151 tccgtctttc tccacgtatg ccttgacatc tgacgagctc ttagctgcct
2201 gaatgttcgg atggaaatgt gctgaccttg ttggggatac aaggtcgaac
2251 aatcgttcgt tcgtgcactg gtattttcct tcgaactgta tgaggacgtg
2301 cagatgaggt tgcccatctt cgtgtaattc tctggctaca cgaatgaata
2351 gtttattgac tggtattgtt aaggctaaca gttgggaaag tgcttcttct
2401 ttcgaaagag aacatttagg ataagtgaga aaatagtttt tggcatttaa
2451 acgaaatcgt ttcgggagtg gcatatttgt aaataagagc ttgtacaccg
2501 attgggagct ctcacaaagt ccgaatgaat cggtgtattg gtgtacaata
2551 tatactagaa ccctcaatag aactttcaat ctcgaccgaa cacgtggcgg
2601 ccatccgtta taatatt