Sequence of DPV Maize stripe virus
Maize stripe virus isolate MStV-SR-INDIA segment RNA3, complete sequence.
ACC No: JF907429
Dated: 2012-10-31 | Length: 2357 | CRC: -1006406959
ID JF907429; SV 1; linear; genomic RNA; STD; VRL; 2357 BP.
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AC JF907429;
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DT 31-OCT-2012 (Rel. 114, Created)
DT 31-OCT-2012 (Rel. 114, Last updated, Version 1)
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DE Maize stripe virus isolate MStV-SR-INDIA segment RNA3, complete sequence.
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KW .
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OS Maize stripe virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
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RN [1]
RP 1-2357
RA Srinivas K P Sreenivasulu.P.;
RT "Complete sequence analysis of RNA3 of Maize stripe virus associated with
RT stripe disease of Sorghum bicolor in Andhra Pradesh, India";
RL Unpublished.
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RN [2]
RP 1-2357
RA Srinivas K P Sreenivasulu.P.;
RT ;
RL Submitted (30-APR-2011) to the INSDC.
RL Department of Virology, Sri Venkateswara University, Tirupati, Andhra
RL Pradesh 517502, India
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FH Key Location/Qualifiers
FH
FT source 1. .2357
FT /organism="Maize stripe virus"
FT /segment="RNA3"
FT /host="Sorghum bicolor"
FT /isolate="MStV-SR-INDIA"
FT /mol_type="genomic RNA"
FT /country="India:Cuddapah, Andhra Pradesh"
FT /collection_date="Nov-2009"
FT /db_xref="taxon:12330"
FT 5'UTR 1. .66
FT gene 67. .660
FT /gene="NS3"
FT CDS 67. .660
FT /codon_start=1
FT /gene="NS3"
FT /product="nonstructural protein 3"
FT /protein_id="AER38263.1"
FT /translation="MNFYTSSVGVLQYDHSLLVMNDLTNIHVTCEDINCSAKLLCYMYD
FT VYKSRYPSMDEHSFLRLLRGPDDAEILSTFLRTIIWILSHDRNFPDEFRIPATALVSAY
FT IKYYSELKPRAPTTNCWTCRMSKNNLPFQVPSIKGFPAEAELYIVPISDHDGKTIEFSG
FT MKTLYKSPSKKKHNYVISSDMPPLSARYTVWDGK"
FT misc_feature 661. .1313
FT /note="internal large noncoding spacer"
FT gene complement(1314. .2264)
FT /gene="N/CP"
FT CDS complement(1314. .2264)
FT /codon_start=1
FT /gene="N/CP"
FT /product="nucleocapsid protein"
FT /protein_id="AER38264.1"
FT /translation="MATNKPANLNDLQKAINDISKDALKYLTDNKASVTTFHDQIGYAG
FT YDAATLIGILKDKGGATLAQDVVKMIVMRYVRGTGFVKDVTKKTKATAGSEEAAALVAR
FT YGLVSSVGSNANAITLGRVAQLFPNVSFEVTKQFSGLKMAIDSSDLSMPGTDSLLWDFV
FT PQYITLDSSSAPYCTTKSINHILFSIHMIHAFLVTKKTMPETKKKERGLLKDIDMIKYT
FT TGLLVITCQSKNLNEAKKKSGRTKVCDPFYVNEKIKESFLALLASFGKNVVCSYGTQVK
FT QFLAEQCSLMKIMVDNSSKTQDEMKTAIVEFFEEE"
FT 3'UTR 2265. .2357
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SQ Sequence 2357 BP; 707 A; 478 C; 396 G; 776 T; 0 other;
jf907429 Length: 2357 31-OCT-2012 Type: N Check: 6102 ..
1 acacaaagtc ctgggtaaaa aatattattt tttatcaata tatatattac
51 ttctgtccat cgaagcatga acttttacac atcatctgtt ggagtgctac
101 agtatgacca ctctttgttg gtcatgaatg atctcaccaa cattcatgtc
151 acttgtgaag atatcaattg ctctgcaaag cttctctgtt acatgtatga
201 tgtctacaag tctaggtacc catctatgga tgagcactct tttttgcgcc
251 tactaagggg tccggatgat gcagagatac ttagtacttt cttgaggacc
301 atcatctgga tactatctca tgatagaaac tttccagatg agtttaggat
351 cccagcaaca gcacttgttt ctgcttatat taaatactat tcagagctga
401 agccaagagc tcctacaact aactgctgga cctgcaggat gtcgaaaaac
451 aatctgcctt tccaagttcc ctcaatcaag ggattccctg ctgaagcaga
501 gctgtatata gttcctatct ctgatcatga tggaaagaca atagagtttt
551 caggaatgaa gacactatat aaatctccaa gcaagaaaaa acataattat
601 gttatttcat cagacatgcc tcctctcagt gctagataca ctgtctggga
651 tggcaaataa gatgaaaatt gtgaaaattt gtctctaggt atcagcggat
701 aatgtaacta agttacattt ttagaataac aaagtgtgct aggcacacta
751 tccgaataat agtcggatga aggccttaac ctaatttttt tgtttttttt
801 tgtttttttg tttttttgtt tttttgtttt ttcatttttt tggtttttta
851 tatatataaa catgcataac acgacataag gtatgttatt attaactaca
901 ttacatacac gcactaataa tagtgaagat aagcacacaa gaactaaaac
951 acaacaaaag caatacaaat atataataga caatgttcaa tatattagaa
1001 aagcattacc atactactat gattagagct catgaatttt caacaccatc
1051 atcactacat gcacacacaa actttttttt ggtttttcat tttttggttt
1101 ttttgtcttt ttgacttttt tgattttttt gttttttaat tttttgattt
1151 ttttgttttt tagtttttgt cacacacaac aataatacac accaaacaac
1201 acacacaaat agaaaactac aatacatagt caacgcctca gcttcccaac
1251 aactgatcat ccttcccaac aaattttctc agtttatggt gaaatcacca
1301 tagcatggag agttcactcc tcttcgaaga actcaacgat tgcagtcttc
1351 atctcatctt gagttttgga gctgttgtcc accatgattt tcatcaagct
1401 acactgttct gccaagaact gtttgacttg ggtcccatag gagcaaacaa
1451 cattctttcc gaatgatgca agcagagcca agaaagactc cttgattttt
1501 tcattcacat agaatgggtc acacacctta gttctgccag acttcttttt
1551 tgcctcattg aggttcttag actggcaggt gataactagt agaccagtag
1601 tatactttat catgtcaatg tccttgagca gccctctctc tttcttctta
1651 gtctctggca ttgttttctt ggtgaccaag aaagcatgga tcatatgaat
1701 actaaagaga atatgattta tactcttagt agtgcaatat ggtgcagatg
1751 agctatcaag tgtaatatac tgagggacaa aatcccacag cagagagtca
1801 gttcccggca tactaagatc agaagaatca attgccatct taagaccaga
1851 gaactgtttg gtgacttcaa aagatacatt tggaaagagt tgagcaactc
1901 ttcccaatgt aatagcattc gcgttgctac ccacagatga cactagtcca
1951 tagcgtgcaa ctaaagctgc tgcctcctca ctgcccgcag ttgctttagt
2001 ctttttagta acatccttga caaaaccagt tcctctgaca tatctcatca
2051 caatcatctt aaccacatcc tgagcaagag ttgctccacc tttgtccttg
2101 agaattccaa ttagagtagc cgcatcatat cctgcatatc caatctgatc
2151 atgaaaagtg gtcacagacg ccttgttgtc agtgagatac ttcaaggcat
2201 ctttggaaat atcatttata gctttctgga gatcattaag atttgcaggc
2251 ttgttagtgg ccattgctct caaggggatt ggtgcaatgg ttatgcttta
2301 gacctttctt cagttgatca atacgaaatc gattaaacga ttacccagac
2351 tttgtgt