Sequence of DPV East African cassava mosaic Kenya virus
East African cassava mosaic Kenya virus isolate Comoros:Grande-Comore:GC27AG1:2009 segment DNA-A, complete sequence.
ACC No: JF909101
Dated: 2012-12-05 | Length: 2797 | CRC: 1988960778
ID JF909101; SV 1; circular; genomic DNA; STD; VRL; 2797 BP.
XX
AC JF909101;
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DT 21-JUN-2012 (Rel. 113, Created)
DT 05-DEC-2012 (Rel. 115, Last updated, Version 3)
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DE East African cassava mosaic Kenya virus isolate
DE Comoros:Grande-Comore:GC27AG1:2009 segment DNA-A, complete sequence.
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KW .
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OS East African cassava mosaic Kenya virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RC Publication Status: Online-Only
RP 1-2797
RX PUBMED; 23186303.
RA De Bruyn A., Villemot J., Lefeuvre P., Villar E., Hoareau M.,
RA Harimalala M., Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B.,
RA Harkins G.W., Varsani A., Martin D.P., Lett J.M.;
RT "East African cassava mosaic-like viruses from Africa to Indian ocean
RT islands: molecular diversity, evolutionary history and geographical
RT dissemination of a bipartite begomovirus";
RL BMC Evol. Biol. 12(1):228-228(2012).
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RN [2]
RP 1-2797
RA Villemot J., Lefeuvre P., Villar E., Hoareau M., Harimalala M.,
RA Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., Varsani A., Martin D.P.,
RA Lett J.-M.;
RT ;
RL Submitted (24-MAR-2011) to the INSDC.
RL UMR PVBMT, CIRAD, 7, chemin de l'IRAT, Saint-Pierre, Reunion 97410, France
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FH Key Location/Qualifiers
FH
FT source 1. .2797
FT /organism="East African cassava mosaic Kenya virus"
FT /segment="DNA-A"
FT /host="Manihot esculenta (cassava)"
FT /isolate="Comoros:Grande-Comore:GC27AG1:2009"
FT /mol_type="genomic DNA"
FT /country="Comoros:Grande-Comore"
FT /lat_lon="11.48 S 43.32 E"
FT /collection_date="2009"
FT /db_xref="taxon:393599"
FT gene 174. .530
FT /gene="AV2"
FT CDS 174. .530
FT /codon_start=1
FT /gene="AV2"
FT /product="movement protein"
FT /protein_id="AEG89940.1"
FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL
FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS
FT EAQDVQNVSKPRCS"
FT gene 334. .1107
FT /gene="AV1"
FT CDS 334. .1107
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="AEG89939.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA
FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITHR
FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVQDRRPYGQSPQDFGQVFNMFDNE
FT PTTATVKNDLRDRYQVLRKFYTTVVGGPSGMKEQSLVKRFFRINNHVVYNHQEQAKYEN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN"
FT gene complement(1104. .1508)
FT /gene="AC3"
FT CDS complement(1104. .1508)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer"
FT /protein_id="AEG89943.1"
FT /translation="MDSRTGELITAPQAKNGVFTWEITNPLYFDITNHDRRPGNMNHDI
FT ITFQIRFNHNIRKALGIHKCFLNFKVWTTLRPPTGLFLKVFRYQVLKYLDMIGVISINT
FT VIQAVDHVLYNVLLNTLQVTEQHAIKFNLY"
FT gene complement(1249. .1656)
FT /gene="AC2"
FT CDS complement(1249. .1656)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcription activator protein"
FT /protein_id="AEG89942.1"
FT /translation="MPPSSPSTSHCSQVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI
FT DCINHGFSHRGTHHCASSKEWRFYLGNNKSPLFRHHQPRQETREHEPRHHHIPDTVQPQ
FT HPEGIGDSQVFSQLQGLDDLTASDWSFLKSI"
FT gene complement(1580. .2644)
FT /gene="AC1"
FT CDS complement(1580. .2644)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication associated protein"
FT /protein_id="AEG89941.1"
FT /translation="MPRAGRFSIKAKNYFLTYPKCSLSKEEALDQLRQLQTPTNKLFIK
FT ICRELHENGEPHLHALIQFEGKYNCTNQRFFDLISPSRSAHFHPNIQGAKSSSDVKSYL
FT DKDGDTIQWGEFQIDGRSARGGQQSANDAYAKALNSANKSEALNVIRELAPKDFVLQFH
FT NLNSNLERIFQEPLTPYISPFLSSSFTNVPEELEAWVSENVMGSAARPWRPSSIVIEGD
FT SRTEKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKHRSLKAWALKNATFITLHEPL
FT FSSAHQSPTPHSED"
FT gene complement(2197. .2493)
FT /gene="AC4"
FT CDS complement(2197. .2493)
FT /codon_start=1
FT /gene="AC4"
FT /product="C4 protein"
FT /protein_id="AEG89944.1"
FT /translation="MKMGNLICMPSFSSKASTIVPTNDSSTSYPLPGLPISTQIFRELN
FT QAPTSSPIWIRTETPSNGASFRSTDDLLEADNNPPMTLTPRLLTQQISQRLLM"
XX
SQ Sequence 2797 BP; 726 A; 558 C; 725 G; 788 T; 0 other;
jf909101 Length: 2797 05-DEC-2012 Type: N Check: 6145 ..
1 accggatggc cgcgcccgaa aaaagcaggt tgaccccaca agatggccgc
51 gcccgttaaa gaaagtggtc cccgcgcacc tgtgttggtc ggccagtgat
101 attcacgcgt gaaagtctag atatttgttg tttgtcttta tagacttcgt
151 cgcgaagtag tgagcgcgtc aacatgtggg atccattgtt gaacgatttt
201 cccgaaaccg ttcacggttt ccgttctatg cttgctgtta aatacctgtt
251 acatctggaa caggaatacg atcgcggtac tgtcggggcg gagtatatac
301 gtgatttaat aggggttcta cggtgtaaga gttatgtcga agcgaccagg
351 agatataata atctcaacac ccgtatccaa ggtgcggagg aggctgaact
401 tcgacagccc atacacgaac cgtgttgttg cccccactgt ccgcgtcacc
451 agaagcaaaa tatgggccaa caggcccatg tatcggaagc ccaagatgta
501 cagaatgtat cgaagcccag atgttcctaa gggctgtgaa ggcccatgta
551 aggttcagtc ctatgaacag agggatgatg tgaagcacac tggtatggtc
601 cgatgtgtca gtgatgttac tcgtggatca ggcattaccc atagagtcgg
651 gaagaggttt tgtgtgaagt ccatatatat attgggcaag atttggatgg
701 atgagaatat caagaagcaa aatcatacga accatgttat gttcttcctt
751 gtccaagata gaaggcctta tggtcagagt cctcaagatt ttggacaagt
801 gttcaacatg tttgataatg aacctactac ggcaactgtg aagaatgatc
851 ttagggaccg atatcaggtg ttacgtaaat tctatacgac tgttgtgggt
901 ggaccctctg ggatgaagga acaatctctg gttaagaggt tttttaggat
951 caataatcat gtagtgtata atcatcagga acaggccaag tatgagaatc
1001 atactgagaa tgcgttgtta ttgtatatgg catgtacaca tgcctcgaat
1051 ccggtgtacg ctacgctgaa aatacgcatc tatttctatg atgcagtgac
1101 aaattaataa aggttgaatt ttattgcatg ttgctccgta acttggagtg
1151 tgttgagtaa tacattgtac agaacatgat caacagcttg aattacagtg
1201 ttaatggaaa taacgcctat catatctaaa tacttgagca cttgatatct
1251 aaatactttt aagaaaagac cagtcggagg ccgtaaggtc gtccagacct
1301 tgaagttgag aaaacacttg tgaatcccca atgccttccg gatgttgtgg
1351 ttgaaccgta tctggaatgt gatgatgtcg tggttcatgt tccctggtct
1401 cctgtcgtgg ttggtgatgt cgaaatagag gggatttgtt atttcccagg
1451 taaaaacgcc attctttgct tgaggcgcag tgatgagttc ccctgtgcga
1501 gaatccatga ttgatgcagt cgatatggag atagaacgag cagccgcatt
1551 cgaggtctac ccgcctacgt ctgacggccc tagtcttcgc tgtgcggtgt
1601 tggactttga tgggcacttg agaacaatgg ctcgtggagg gtgatgaagg
1651 tggcattctt taaagcccag gctttaaggg accggtgctt ttcctcgtcc
1701 agaaactctt tatatgatga tgttggtcct ggattgcata ggaagatagt
1751 gggaatgccg cctttaattt gaattggctt cccgtacttt gtattgcttt
1801 gccagtccct ttgggccccc atgaattctt tgaaatgctt gaggtagtgg
1851 gggtcgacgt catcaatgac gttgtaccat gcgtcgttgc tgtatacctt
1901 tggactgaga tccaggtgtc cacacaagta gttatgtggt cccaaagagc
1951 gagcccacat tgtcttctct gtcctactat ctccctcgat gacgatacta
2001 ctaggtctcc atggccgcgc agcggaaccc atcacgttct cggaaaccca
2051 ggcttcaagt tcctcaggaa cgttagtgaa agaagaagaa agaaagggag
2101 aaatataagg agtgagaggc tcttgaaaaa tcctctctaa attgctattt
2151 aaattatgaa actgtaaaac aaaatctttt ggggctagtt cccgtattac
2201 attaagagcc tctgacttat ttgctgagtt aagagccttg gcgtaagcgt
2251 cattggcgga ttgttgtccg cctcgagcag atcgtccgtc gatctgaaac
2301 tcgccccatt ggatggtgtc tccgtcctta tccagatagg acttgacgtc
2351 ggagcttgat ttagctccct gaatatttgg gtggaaatgg gcagaccggg
2401 aaggggatat gaggtcgaag aatcgttggt tggtacaatt gtacttgcct
2451 tcgaactgaa tgagggcatg cagatgaggt tccccatttt catggagctc
2501 tctgcagatc ttgatgaaca atttatttgt tggggtttgg agttgtcgga
2551 gctgatctaa ggcctcttct ttcgatagag aacatttggg atatgtgagg
2601 aaatagtttt tggctttgat gctaaaacga ccagcccttg gcatttgcgc
2651 tgtcgtatag caatcggggg gcacgcaaag tctgtagcaa tcgggggaat
2701 ggggggcaat ttatatgatg ccccccaaat ggcatttatg taatatcctc
2751 atgaaatttg aatttcgaac gtggaaagcg gccatccgta taatatt