Sequence of DPV East African cassava mosaic virus
East African cassava mosaic virus-Kenya isolate Comoros:Grande-Comore:GC32BY1:2010 segment DNA-A, complete sequence.
ACC No: JF909111
Dated: 2012-12-05 | Length: 2801 | CRC: 1356234720
ID JF909111; SV 1; circular; genomic DNA; STD; VRL; 2801 BP.
XX
AC JF909111;
XX
DT 21-JUN-2012 (Rel. 113, Created)
DT 05-DEC-2012 (Rel. 115, Last updated, Version 3)
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DE East African cassava mosaic virus-Kenya isolate
DE Comoros:Grande-Comore:GC32BY1:2010 segment DNA-A, complete sequence.
XX
KW .
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OS East African cassava mosaic virus-Kenya
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RC Publication Status: Online-Only
RP 1-2801
RX PUBMED; 23186303.
RA De Bruyn A., Villemot J., Lefeuvre P., Villar E., Hoareau M.,
RA Harimalala M., Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B.,
RA Harkins G.W., Varsani A., Martin D.P., Lett J.M.;
RT "East African cassava mosaic-like viruses from Africa to Indian ocean
RT islands: molecular diversity, evolutionary history and geographical
RT dissemination of a bipartite begomovirus";
RL BMC Evol. Biol. 12(1):228-228(2012).
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RN [2]
RP 1-2801
RA Villemot J., Lefeuvre P., Villar E., Hoareau M., Harimalala M.,
RA Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., Varsani A., Martin D.P.,
RA Lett J.-M.;
RT ;
RL Submitted (24-MAR-2011) to the INSDC.
RL UMR PVBMT, CIRAD, 7, chemin de l'IRAT, Saint-Pierre, Reunion 97410, France
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FH Key Location/Qualifiers
FH
FT source 1. .2801
FT /organism="East African cassava mosaic virus-Kenya"
FT /segment="DNA-A"
FT /host="Manihot esculenta (cassava)"
FT /isolate="Comoros:Grande-Comore:GC32BY1:2010"
FT /mol_type="genomic DNA"
FT /country="Comoros:Grande-Comore"
FT /lat_lon="11.48 S 43.31 E"
FT /collection_date="2010"
FT /db_xref="taxon:1229189"
FT gene 174. .530
FT /gene="AV2"
FT CDS 174. .530
FT /codon_start=1
FT /gene="AV2"
FT /product="movement protein"
FT /protein_id="AEG90000.1"
FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQQYDRGTVGAEYIRDL
FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS
FT EAQDVQNVSKPRCP"
FT gene 334. .1107
FT /gene="AV1"
FT CDS 334. .1107
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="AEG89999.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA
FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITHR
FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDNE
FT PTTATVKNDLRDRYQVLRKFYATVVGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN"
FT gene complement(1104. .1508)
FT /gene="AC3"
FT CDS complement(1104. .1508)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer"
FT /protein_id="AEG90003.1"
FT /translation="MDSRTGELITAPQATNGVFTWEITNPLYFEITNHDKRPGNMHHDI
FT ITLQIRFNHNLRKALGIHKCFLNFRVWTTLRPQTGRFLKVFRYQVLKYLDMIGVISINT
FT VLQAVDHVLYDVLLNTLQVTEQHAIKFNLY"
FT gene complement(1249. .1656)
FT /gene="AC2"
FT CDS complement(1249. .1656)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcription activator protein"
FT /protein_id="AEG90002.1"
FT /translation="MPPSSPSTSHCSLVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI
FT DCINHGFSHRGTHHCASSNEWRFYLGNNKSPLFRNHQPRQAAREHAPRHHHTPDTIQPQ
FT PPEGIGDSQVFSQLQGLDDLTASDWSFLKSI"
FT gene complement(1565. .2644)
FT /gene="AC1"
FT CDS complement(1565. .2644)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication associated protein"
FT /protein_id="AEG90001.1"
FT /translation="MPRAGRFQINARNYFITYPRCSLTKEEALSQLKALSYPTNFIFIR
FT VCRELHQDGVPHLHVLIQFEGKFQCTNPRFFDLISTSRSTHFHPNIQGAKSSSDVKAYI
FT EKGGDFLDDGIFQVDARSARGEGQHLAQVYADALNASSKTEALQIIKEKDPKSFFLQFH
FT NISANADRIFQAPPQTYISPFLSSSFTQVPEDIEVRVSENICTPAARPWRPISIVLECD
FT SLTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVYPLYLKHFKDFLGAQRDC
FT QIYIKYGKPIQIKGGIPSIFFCNPGSTSTYKEFLEEEKNLSLKAWALKNATFITLHEPL
FT FSSAHQSPTPHSEDQGRQT"
FT gene complement(2254. .2487)
FT /gene="AC4"
FT CDS complement(2254. .2487)
FT /codon_start=1
FT /gene="AC4"
FT /product="C4 protein"
FT /protein_id="AEG90004.1"
FT /translation="MGCLISMFSSSSKGSSNVPTQDSSISFPHPDPHISIRTFRALNHR
FT PMSKLILKREGTFLTMEFSRSMPEVQGGRASI"
XX
SQ Sequence 2801 BP; 742 A; 553 C; 713 G; 793 T; 0 other;
jf909111 Length: 2801 05-DEC-2012 Type: N Check: 8621 ..
1 accggatggc cgcgcccgaa aaagcaggtg gaccccacag tatggccgcg
51 cccgttaaag aaagtggtcc ccgcgcacgt gttttggtcg gccagtcata
101 ttcacgcgtg aaagtctaga tatttgttgt tggtctttat agacttcgtc
151 gcgaagtagt ggatcgcgtc aacatgtggg atccattgtt gaacgatttc
201 cccgaaaccg ttcacggttt ccgttctatg cttgctgtta aatacctgtt
251 acatctggaa cagcaatacg atcgcggtac tgtcggggct gagtatatac
301 gggatctaat aggggtacta cggtgtaaga gttatgtcga agcgaccagg
351 agatataata atctcaacac ccgtatccaa ggtgcggagg aggctgaact
401 tcgacagccc atacacgaac cgtgttgttg cccccactgt ccgcgtcacc
451 agaagcaaaa tatgggccaa caggcccatg tatcggaagc ccaagatgta
501 cagaatgtat cgaagcccag atgtccctaa gggctgtgaa ggcccatgta
551 aggttcagtc ctacgaacag agggatgatg ttaagcacac gggtatggtt
601 cgatgtgtca gtgatgttac gcgtgggtca ggtattactc atagagtcgg
651 gaagaggttt tgtgttaagt ccatatatat attgggcaag atctggatgg
701 atgagaatat caagaagcaa aatcatacga accatgtgat gttcttcctt
751 gttcgagata gaaggcctta tggtccgagt cctcaagatt ttggacaagt
801 gttcaacatg tttgataatg aacctactac tgcaactgtg aaaaatgatc
851 ttagggaccg gtatcaggtg ttacgtaaat tctatgcgac tgttgttggt
901 ggaccctctg ggatgaagga acaagctctg gttaagaggt tttttaggat
951 caataatcat gtagtgtata atcatcagga acaggccaag tatgagaatc
1001 atactgagaa tgcgttgtta ttgtatatgg catgtacaca tgcctcgaat
1051 cctgtgtacg ctacgctgaa aatacgcatc tatttctatg atgcagtgac
1101 aaattaataa aggttgaatt ttattgcatg ttgctccgta acttggagcg
1151 tgtttagtaa tacatcgtac agaacatgat caacagcctg aagtacagtg
1201 ttaatggaaa taacgcctat catatctaaa tacttgagca cttgatatct
1251 aaatactttt aagaaacgac cagtctgagg ccgtaaggtc gtccagaccc
1301 tgaagttgag aaaacacttg tgaatcccca atgccttccg gaggttgtgg
1351 ttgaatcgta tctggagtgt gatgatgtcg tggtgcatgt tccctggccg
1401 cttgtcgtgg ttggtgattt cgaaatagag gggatttgtt atttcccagg
1451 taaaaacgcc attcgttgct tgaggcgcag tgatgagttc ccctgtgcga
1501 gaatccatgg ttgatgcagt cgatatggag atagaacgag cagccgcatt
1551 cgaggtctac ccgcctacgt ctgacggccc tggtcttcgc tgtgcggtgt
1601 tggactttga tgggcactag agaacaatgg ctcgtggagg gtgatgaagg
1651 tggcattctt taaagcccag gctttaaggg acaggttctt ttcctcttcc
1701 agaaactctt tatatgttga tgttgatcca ggattgcaga agaagataga
1751 gggaatgccg cctttaattt gaattggctt cccgtacttt atatagattt
1801 gacagtctct ttgggccccc aggaaatctt tgaaatgctt tagatagagc
1851 gggtatacgt cgtcaatgac gttgtaccat gcgtcgtttg aatatacttt
1901 tggagacaga tccaggtgtc cacatagata attatggggt cccagtgaac
1951 gagcccacat ggtttttcct gttaggctat cacattcgag aacaatactg
2001 atcggtctcc atggccgcgc agcgggagtg catatatttt ctgatacccg
2051 tacttctatg tcttcgggga cttgtgtaaa tgatgatgat aagaacggac
2101 taatataagt ttggggcgga gcctggaaga ttctatccgc gttagcagat
2151 atgttatgga actgtaaaaa aaaggacttg ggatcttttt ctttaataat
2201 ctgaagagct tctgttttag aagaagcatt caacgcgtct gcatatacct
2251 gagctaaatg ctggccctcc ccccttgcac ttctggcatc gacctggaaa
2301 attccatcgt caagaaagtc ccctcccttt tcaatataag ctttgacatc
2351 ggacgatgat ttagcgccct gaatgttcgg atggaaatgt gtggatctgg
2401 atgtggaaat gagatcgaag aatcttgggt tggtacattg gaacttccct
2451 tcgaactgga tgagaacatg gagatgaggc accccatcct gatgtagttc
2501 tcggcaaacc ctaatgaata tgaaattcgt cgggtaagaa agggctttta
2551 attgggaaag tgcctcttcc tttgttaatg agcatcgggg ataggtaatg
2601 aaataatttc tggcatttat ttgaaaacga ccggctctcg gcatatttgc
2651 tgtcgttttg tatcggtgga cactcaaaac tccaggggaa cggtggaatg
2701 gtggacatta tataggatgt cccccaatgg cattcgtgta aataggtaga
2751 cttccatttc aaatttgaat gtcgaatatt ggcggccatc cgattaatat
2801 t