Sequence of DPV East African cassava mosaic Kenya virus
East African cassava mosaic Kenya virus isolate Comoros:Grande-Comore:GC35BC1:2009 segment DNA-A, complete sequence.
ACC No: JF909114
Dated: 2012-12-05 | Length: 2800 | CRC: 404653327
ID JF909114; SV 1; circular; genomic DNA; STD; VRL; 2800 BP.
XX
AC JF909114;
XX
DT 21-JUN-2012 (Rel. 113, Created)
DT 05-DEC-2012 (Rel. 115, Last updated, Version 3)
XX
DE East African cassava mosaic Kenya virus isolate
DE Comoros:Grande-Comore:GC35BC1:2009 segment DNA-A, complete sequence.
XX
KW .
XX
OS East African cassava mosaic Kenya virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RC Publication Status: Online-Only
RP 1-2800
RX PUBMED; 23186303.
RA De Bruyn A., Villemot J., Lefeuvre P., Villar E., Hoareau M.,
RA Harimalala M., Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B.,
RA Harkins G.W., Varsani A., Martin D.P., Lett J.M.;
RT "East African cassava mosaic-like viruses from Africa to Indian ocean
RT islands: molecular diversity, evolutionary history and geographical
RT dissemination of a bipartite begomovirus";
RL BMC Evol. Biol. 12(1):228-228(2012).
XX
RN [2]
RP 1-2800
RA Villemot J., Lefeuvre P., Villar E., Hoareau M., Harimalala M.,
RA Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., Varsani A., Martin D.P.,
RA Lett J.-M.;
RT ;
RL Submitted (24-MAR-2011) to the INSDC.
RL UMR PVBMT, CIRAD, 7, chemin de l'IRAT, Saint-Pierre, Reunion 97410, France
XX
FH Key Location/Qualifiers
FH
FT source 1. .2800
FT /organism="East African cassava mosaic Kenya virus"
FT /segment="DNA-A"
FT /host="Manihot esculenta (cassava)"
FT /isolate="Comoros:Grande-Comore:GC35BC1:2009"
FT /mol_type="genomic DNA"
FT /country="Comoros:Grande-Comore"
FT /lat_lon="11.84 S 43.31 E"
FT /collection_date="2009"
FT /db_xref="taxon:393599"
FT gene 174. .539
FT /gene="AV2"
FT CDS 174. .539
FT /codon_start=1
FT /gene="AV2"
FT /product="movement protein"
FT /protein_id="AEG90018.1"
FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL
FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS
FT EAQDVQNVSKPRCSEGL"
FT gene 334. .1107
FT /gene="AV1"
FT CDS 334. .1107
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="AEG90017.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA
FT NRPMYRKPKTYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITHR
FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGQSPQDFGQVFNMFDNE
FT PTTATVKNDLRDRYQVLRKFYTTVVGGPSGMKEQSLVKRFFRINNHVVYNHQEQAKYEN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN"
FT gene complement(1104. .1508)
FT /gene="AC3"
FT CDS complement(1104. .1508)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer"
FT /protein_id="AEG90021.1"
FT /translation="MDSRTGELITAPQAKNGVFTWELTNPLYFDITNHDKRPGNMNHDI
FT ITFQIRFNHNIRKALGIHKCFLNFKVWTTLRPPTGLFLKVFRYQVLKYLDMIGVISINT
FT VIQAVDHVLYNVLLNTLQVTEQHAIKFNLY"
FT gene complement(1249. .1656)
FT /gene="AC2"
FT CDS complement(1249. .1656)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcription activator protein"
FT /protein_id="AEG90020.1"
FT /translation="MPPSSPSTSHCSQVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI
FT DCINHGFSHRGTHHCASSKEWRFYLGTNKSPLFRHHQPRQETREHEPRHHHIPDTVQPQ
FT HPEGIGDSQMFSQLQGLDDLTASDWSFLKSI"
FT gene complement(1580. .2644)
FT /gene="AC1"
FT CDS complement(1580. .2644)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication associated protein"
FT /protein_id="AEG90019.1"
FT /translation="MPRAGRFSIKAKNYFLTYPKCSLSKEAALDQLRQLQTPTNKLFIK
FT ICRELHDNGEPHLHALIQFEGKYNCTNQRFFDLISPSRSAHFHPNIQGAKSSSDVKSYL
FT DKDGDTIQWGEFQIDGRSARGGQQSANDAYAKALNSANKSEALNVIRELAPKDFVLQFH
FT NLNSNLERIFQEPLTPYISPFLSSSFTDVPEELEAWVSDNVMGSAARPWRPSSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKAWAIKNATFITLHEPL
FT FSSAHQSPTPHSED"
FT gene complement(2197. .2493)
FT /gene="AC4"
FT CDS complement(2197. .2493)
FT /codon_start=1
FT /gene="AC4"
FT /product="C4 protein"
FT /protein_id="AEG90022.1"
FT /translation="MTMGNLICMRSFSSKASTIVPTNDSSTSYHLPGPPISTQIFRELN
FT QAPTSSPIWIRTETPSNGASFRSTDDLLEADNNPPMTLTPRLLTQQISQRLLM"
XX
SQ Sequence 2800 BP; 725 A; 562 C; 723 G; 790 T; 0 other;
jf909114 Length: 2800 05-DEC-2012 Type: N Check: 5291 ..
1 accggatggc cgcgcccgaa aaaagcaggt ggccccacaa gatggccgcg
51 cccgttaaag aaagtggtcc ccgcgcactt gtgttggtcg gccagtcata
101 ttcacgcgtg aaagtctaga tatttgttgt ttgtctttat agacttcgtc
151 gcgaagtagt ggagcgcgtc aacatgtggg atccattgtt gaacgatttt
201 cccgaaaccg ttcacggttt ccgttctatg cttgctgtta aatacctgtt
251 acatctggaa caggaatacg atcgcggtac tgtcggggcg gagtatatac
301 gtgatttaat aggggttcta cggtgtaaga gttatgtcga agcgaccagg
351 agatataata atctcaacac ccgtatccaa ggtgcggagg aggctgaact
401 tcgacagccc atacacgaac cgtgttgttg cccccactgt ccgcgtcacc
451 agaagcaaaa tatgggccaa caggcccatg tatcggaagc ccaagacgta
501 cagaatgtat cgaagcccag atgttccgaa gggctgtgaa ggcccatgta
551 aggttcagtc ctatgaacag agggatgatg tgaagcacac tggtatggtc
601 cgatgtgtta gtgatgttac tcgtggatca ggcattaccc atagagtcgg
651 gaagaggttt tgtgtgaagt ccatatatat attgggcaag atttggatgg
701 atgagaatat caagaagcaa aatcatacga accatgttat gttcttcctt
751 gttcgagata gaaggcctta cggtcagagt cctcaagatt ttggacaagt
801 gttcaacatg tttgataatg aacctactac ggcaactgtg aagaatgatc
851 ttagggaccg atatcaggtg ttacgtaaat tttatacgac tgttgttggt
901 ggaccctctg ggatgaagga acaatctctg gttaagaggt tttttaggat
951 caataatcat gtagtgtata atcatcagga acaggccaag tatgagaacc
1001 atactgagaa tgccttgtta ttgtatatgg catgtacaca tgcctcgaat
1051 cctgtgtacg ctacgctgaa aatacgcatc tatttctatg atgcagtgac
1101 aaattaataa aggttgaatt ttattgcatg ttgctccgta acttggagtg
1151 tgtttagtaa tacattgtac agaacatgat caacagcttg aattacagtg
1201 ttaatggaaa taacgcctat catatctaaa tacttgagca cctgatatct
1251 aaatactttt aagaaaagac cagtcggagg ccgtaaggtc gtccagacct
1301 tgaagttgag aaaacatttg tgaatcccca atgccttccg gatgttgtgg
1351 ttgaaccgta tctggaatgt gatgatgtcg tggttcatgt tccctggtct
1401 cttgtcgtgg ttggtgatgt cgaaatagag gggatttgtt agttcccagg
1451 taaaaacgcc attctttgct tgaggcgcag tgatgagttc ccctgtgcga
1501 gaatccatga ttgatgcagt cgatatgaag atagaacgag cagccgcatt
1551 cgaggtctac ccgcctacgt ctgacggccc tagtcttcgc tgtgcggtgt
1601 tggactttga tgggcacttg agaacaatgg ctcgtggagg gtgatgaagg
1651 tggcattctt tatagcccag gctttaaggg actggttctt ttcctcgtcc
1701 agaaactctt tatatgatga tgttggtcct ggattgcata ggaagatagt
1751 gggaatgccg cctttaattt gaattggctt cccgtacttt gtattgcttt
1801 gccagtccct ttgggccccc atgaattctt tgaaatgctt gaggtagtgg
1851 gggtcgacgt catcaatgac gttgtaccat gcgtcgttac tgtatacctt
1901 tggactgaga tccaggtgtc cacacaagta gttatgtggt cccaaagagc
1951 gagcccacat tgtcttccct gtcctactat ctccctcgat gacgatacta
2001 ctcggtctcc atggccgcgc agcggaaccc atcacgttgt cggaaaccca
2051 agcttcaagt tcctcaggaa cgtcagtgaa agaagaagaa agaaagggag
2101 aaatataagg agtgagaggc tcttgaaaaa tcctctctaa attgctattt
2151 aaattatgaa actgtaaaac aaaatctttt ggggctagtt cccgtattac
2201 attaagagcc tctgacttat ttgctgagtt aagagccttg gcgtaagcgt
2251 cattggcgga ttgttgtccg cctcgagcag atcgtccgtc gatctgaaac
2301 tcgccccatt ggatggtgtc tccgtcctta tccagatagg acttgacgtc
2351 ggagcttgat ttagctccct gaatatttgg gtggaaatgg gcggaccggg
2401 aaggtgatat gaggtcgaag aatcgttggt tggtacaatt gtacttgcct
2451 tcgaactgaa tgagcgcatg cagatgaggt tccccattgt catggagctc
2501 tctgcagatc ttgatgaaca atttatttgt tggggtttgg agctgtcgga
2551 gctgatccaa ggccgcttct ttcgatagag aacatttggg atatgtgagg
2601 aaatagtttt tggctttgat gctaaaacga ccagcccttg gcatttgcgc
2651 tgtcgtatag caatcggggg gggcactcaa aatctgtagc aatcggggga
2701 atgggggggc aatttatatg atgcccccca aatggcattt atgtaatatc
2751 ctcatgtaat ttgaatttca aacgtggaaa gcggccatcc gtataatatt