Sequence of DPV East African cassava mosaic virus
East African cassava mosaic virus-Kenya isolate Comoros:Grande-Comore:GC36BI2:2009 segment DNA-A, complete sequence.
ACC No: JF909115
Dated: 2012-12-05 | Length: 2801 | CRC: -97545575
ID JF909115; SV 1; circular; genomic DNA; STD; VRL; 2801 BP.
XX
AC JF909115;
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DT 21-JUN-2012 (Rel. 113, Created)
DT 05-DEC-2012 (Rel. 115, Last updated, Version 3)
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DE East African cassava mosaic virus-Kenya isolate
DE Comoros:Grande-Comore:GC36BI2:2009 segment DNA-A, complete sequence.
XX
KW .
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OS East African cassava mosaic virus-Kenya
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RC Publication Status: Online-Only
RP 1-2801
RX PUBMED; 23186303.
RA De Bruyn A., Villemot J., Lefeuvre P., Villar E., Hoareau M.,
RA Harimalala M., Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B.,
RA Harkins G.W., Varsani A., Martin D.P., Lett J.M.;
RT "East African cassava mosaic-like viruses from Africa to Indian ocean
RT islands: molecular diversity, evolutionary history and geographical
RT dissemination of a bipartite begomovirus";
RL BMC Evol. Biol. 12(1):228-228(2012).
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RN [2]
RP 1-2801
RA Villemot J., Lefeuvre P., Villar E., Hoareau M., Harimalala M.,
RA Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., Varsani A., Martin D.P.,
RA Lett J.-M.;
RT ;
RL Submitted (24-MAR-2011) to the INSDC.
RL UMR PVBMT, CIRAD, 7, chemin de l'IRAT, Saint-Pierre, Reunion 97410, France
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FH Key Location/Qualifiers
FH
FT source 1. .2801
FT /organism="East African cassava mosaic virus-Kenya"
FT /segment="DNA-A"
FT /host="Manihot esculenta (cassava)"
FT /isolate="Comoros:Grande-Comore:GC36BI2:2009"
FT /mol_type="genomic DNA"
FT /country="Comoros:Grande-Comore"
FT /lat_lon="11.84 S 43.31 E"
FT /collection_date="2009"
FT /db_xref="taxon:1229189"
FT gene 174. .539
FT /gene="AV2"
FT CDS 174. .539
FT /codon_start=1
FT /gene="AV2"
FT /product="movement protein"
FT /protein_id="AEG90024.1"
FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL
FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS
FT EAQDVQNVSKPRCSEGL"
FT gene 334. .1107
FT /gene="AV1"
FT CDS 334. .1107
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="AEG90023.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA
FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITHR
FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGQSPQDFGQVFNMFDNE
FT PTTATVKNDLRDRYQVLRKFYTTVVGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN"
FT gene complement(1104. .1508)
FT /gene="AC3"
FT CDS complement(1104. .1508)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer"
FT /protein_id="AEG90027.1"
FT /translation="MDSRTGELITAPQATNGVFTWEITNPLYFEITNHDKRPGNMNHDI
FT ITLQIRFNHNLRKALGIHKCFLNFKVWTTLRPQTGRFLKVFRYQVLKYLDMIGVISINT
FT VLQAVDHVLYDVLLNTLQVTEQHAIKFNLY"
FT gene complement(1249. .1656)
FT /gene="AC2"
FT CDS complement(1249. .1656)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcription activator protein"
FT /protein_id="AEG90026.1"
FT /translation="MPPSSPSTSHCSLVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI
FT DCINHGFSHRGTHHCASSNEWRFYLGNNKSPLFRNHQPRQAAREHEPRHHHTPDTVQPQ
FT PPEGTGDSQVFSQLQGLDDLTASDWSFLKSI"
FT gene complement(1565. .2644)
FT /gene="AC1"
FT CDS complement(1565. .2644)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication associated protein"
FT /protein_id="AEG90025.1"
FT /translation="MPRAGRFQINARNYFITYPRCSLTKEEALSQLKALSYPTNIKFIR
FT VCRELHQDGVPHLHVLIQFEGKFQCTNPRFFDLISTSRSTHFHPNIQGAKSSSDVKAYI
FT EKGGEFLDDGIFQVDARSARGEGQHLAQVYADALNASSKTEALQIIKEKDPKSFFLQFH
FT NISANADRIFQAPAQTYVSPFLSSSFTQVPEDIEVWVSENICSPAARPWRPISIVLEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVFDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTILLCNPGPTSSYKEFLEEEKNQSLKAWALKNATFITLHEPL
FT FSSAHQSPTPHSEDQGRQT"
FT gene complement(2254. .2487)
FT /gene="AC4"
FT CDS complement(2254. .2487)
FT /codon_start=1
FT /gene="AC4"
FT /product="C4 protein"
FT /protein_id="AEG90028.1"
FT /translation="MGCLISMFSSSSKGSSNVPTHDSSISFPHPDPHISIRTFRELNHR
FT PMSKLILKREGNFLTMEFSRSMPEVQGGRASI"
XX
SQ Sequence 2801 BP; 733 A; 561 C; 714 G; 793 T; 0 other;
jf909115 Length: 2801 05-DEC-2012 Type: N Check: 7999 ..
1 accggatggc cgcgcccgaa aaagcaggtg gaccccacaa gatggccgcg
51 cccgtgaaag aaagtggtcc ccgcgcactt gtgttggtcg gccagtcata
101 ttcacgcgtg aaagtctaga tatttgttgt ttgtctttat agacttcgtc
151 gcgaagtagt ggagcgcgtc aacatgtggg atccattgtt gaacgatttc
201 cccgaaaccg ttcacggttt ccgttctatg cttgctgtta aatacctgtt
251 acatctggaa caggaatacg atcgcggtac tgtcggggcg gagtatatac
301 gtgatttaat aggggttcta cggtgtaaga gttatgtcga agcgaccagg
351 agatataata atctcaacac ccgtatccaa ggtgcggagg aggctgaact
401 tcgacagccc atacacgaac cgtgttgttg cccccactgt ccgcgtcacc
451 agaagcaaaa tatgggccaa caggcccatg tatcggaagc ccaagatgta
501 cagaatgtat cgaagcccag atgttccgaa gggctgtgaa ggcccatgta
551 aggttcagtc ctatgaacag agggatgatg tgaagcacac tggtatggtc
601 cgatgtgtca gtgatgttac tcgtggatca ggcattaccc atagagtcgg
651 gaagaggttt tgtgtgaagt ccatatatat attgggcaag atttggatgg
701 atgagaatat caagaagcaa aatcatacga accatgttat gttcttcctt
751 gttcgagata gaaggcctta tgggcagagt cctcaagatt ttggacaagt
801 gttcaacatg tttgataatg aacctactac ggcaactgtg aagaatgatc
851 ttcgggaccg atatcaggtg ttacgtaaat tctatacgac tgttgtaggt
901 ggaccctctg ggatgaagga acaagctctg gttaagaggt tttttaggat
951 caataatcat gtagtgtata atcatcagga acaggccaag tatgagaatc
1001 atactgagaa tgcgttgtta ttgtatatgg catgtacaca tgcctcgaat
1051 cctgtgtacg ctacgctgaa aatacgcatc tatttctatg atgcagtgac
1101 aaattaataa aggttgaatt ttattgcatg ttgctccgta acttggagcg
1151 tgtttagtaa tacatcgtac agaacatgat caacagcctg aagtacagtg
1201 ttaatggaaa taacgcctat catatctaaa tacttgagca cttgatatct
1251 aaatactttt aagaaacgac cagtctgagg ccgtaaggtc gtccagacct
1301 tgaagttgag aaaacacttg tgaatcccca gtgccttccg gaggttgtgg
1351 ttgaaccgta tctggagtgt gatgatgtcg tggttcatgt tccctggccg
1401 cttgtcgtgg ttggtgattt cgaaatagag gggatttgtt atttcccagg
1451 taaaaacgcc attcgttgct tgaggcgcag tgatgagttc ccctgtgcga
1501 gaatccatgg ttgatgcagt cgatatggag atagaacgag cagccgcatt
1551 cgaggtctac ccgcctacgt ctgacggccc tggtcttcgc tgtgcggtgt
1601 tggactttga tgggcactag agaacaatgg ctcgtggagg gtgatgaagg
1651 tggcattctt taaagcccag gctttaaggg actggttctt ttcctcttcc
1701 agaaactctt tatatgatga tgttggtcca ggattgcaga ggaggatagt
1751 gggaatgccg cctttaattt gaattggctt cccgtacttt gtattgcttt
1801 gccagtctct ttgggccccc atgaattctt tgaaatgctt taaatagtgc
1851 gggtctacgt cgtcaaagac gttgtaccat gcgtcgtttg aatatacctt
1901 tggagacaga tccaggtgtc cacatagata attatggggt cccagtgaac
1951 gagcccacat ggttttccct gttcggctat caccttcgag aacaatactg
2001 atcggtctcc atggccgcgc agcgggactg catatatttt ctgagaccca
2051 tacttctatg tcttcgggga cttgtgtaaa tgatgatgat aagaacggac
2101 taacataagt ttgggccgga gcctggaaga ttctatccgc gttagcagat
2151 atgttatgga actgtaaaaa aaaagacttt ggatcttttt ctttaataat
2201 ctgaagagct tctgttttag aagaagcatt caacgcgtcg gcatatacct
2251 gagctaaatg ctggccctcc ccccttgcac ttctggcatc gacctggaaa
2301 attccatcgt caagaaattc ccctcccttt tcaatataag ctttgacatc
2351 ggacgatgat ttagctccct gaatgttcgg atggaaatgt gtggatctgg
2401 atgtggaaat gagatcgaag aatcgtgggt tggtacattg gaacttccct
2451 tcgaactgga tgagaacatg gagatgaggc accccatcct gatgtagttc
2501 tcggcaaacc ctgatgaatt tgatattcgt cgggtaagaa agggctttta
2551 attgggaaag tgcctcttcc tttgttaatg agcatcgggg ataggtaatg
2601 aaataatttc tggcatttat ttgaaaacga ccggctctcg gcatatttgc
2651 tgtcgttttg tatcggtgga cactcaaaac tccaggggaa cggtggaatg
2701 gtggacatta tataggatgt cccccaatgg cattcgtgta aataggtaga
2751 cttccatttc aaatttgaat gacgaatatt ggcggccatc cgattaatat
2801 t