Sequence of DPV East African cassava mosaic virus
East African cassava mosaic virus-Kenya isolate Comoros:Moheli:MO10BN3:2009 segment DNA-A, complete sequence.
ACC No: JF909133
Dated: 2012-12-05 | Length: 2800 | CRC: -1600031885
ID JF909133; SV 1; circular; genomic DNA; STD; VRL; 2800 BP.
XX
AC JF909133;
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DT 21-JUN-2012 (Rel. 113, Created)
DT 05-DEC-2012 (Rel. 115, Last updated, Version 3)
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DE East African cassava mosaic virus-Kenya isolate Comoros:Moheli:MO10BN3:2009
DE segment DNA-A, complete sequence.
XX
KW .
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OS East African cassava mosaic virus-Kenya
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RC Publication Status: Online-Only
RP 1-2800
RX PUBMED; 23186303.
RA De Bruyn A., Villemot J., Lefeuvre P., Villar E., Hoareau M.,
RA Harimalala M., Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B.,
RA Harkins G.W., Varsani A., Martin D.P., Lett J.M.;
RT "East African cassava mosaic-like viruses from Africa to Indian ocean
RT islands: molecular diversity, evolutionary history and geographical
RT dissemination of a bipartite begomovirus";
RL BMC Evol. Biol. 12(1):228-228(2012).
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RN [2]
RP 1-2800
RA Villemot J., Lefeuvre P., Villar E., Hoareau M., Harimalala M.,
RA Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., Varsani A., Martin D.P.,
RA Lett J.-M.;
RT ;
RL Submitted (24-MAR-2011) to the INSDC.
RL UMR PVBMT, CIRAD, 7, chemin de l'IRAT, Saint-Pierre, Reunion 97410, France
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FH Key Location/Qualifiers
FH
FT source 1. .2800
FT /organism="East African cassava mosaic virus-Kenya"
FT /segment="DNA-A"
FT /host="Manihot esculenta (cassava)"
FT /isolate="Comoros:Moheli:MO10BN3:2009"
FT /mol_type="genomic DNA"
FT /country="Comoros:Moheli"
FT /lat_lon="12.27 S 43.7 E"
FT /collection_date="2009"
FT /db_xref="taxon:1229189"
FT gene 173. .529
FT /gene="AV2"
FT CDS 173. .529
FT /codon_start=1
FT /gene="AV2"
FT /product="movement protein"
FT /protein_id="AEG90132.1"
FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQQYDRGTVGAEYIRDL
FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS
FT EAQDVQNVSKPRCP"
FT gene 333. .1106
FT /gene="AV1"
FT CDS 333. .1106
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="AEG90131.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA
FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITHR
FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDNE
FT PTTATVKNDLRDRYQVLRKFYATVVGGPSGMKEQALVKRFFRINNHVVYNHQEQSKYEN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN"
FT gene complement(1103. .1507)
FT /gene="AC3"
FT CDS complement(1103. .1507)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer"
FT /protein_id="AEG90135.1"
FT /translation="MDSRTGELITAPQATNGVFIWAITNPLYFEITNHDKRPGNMNHDI
FT ITLQIRFNHNLRKALEIHKCFLNFKVWTTLRPQTGRFLKVFRYQVLKYLDMIGVISINT
FT VLQAVDHVLYAVLLNTLQVTEQHAIKFNLY"
FT gene complement(1248. .1655)
FT /gene="AC2"
FT CDS complement(1248. .1655)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcription activator protein"
FT /protein_id="AEG90134.1"
FT /translation="MPPSSPSTSHCSLVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI
FT DCINHGFSHRGTHHCASSNEWRFYLGNNKSPLFRNHQPRQAAREHEPRHHHTPDTVQPQ
FT PPEGIGDSQVFSQLQGLDDLTASDWSFLKSI"
FT gene complement(1564. .2643)
FT /gene="AC1"
FT CDS complement(1564. .2643)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication associated protein"
FT /protein_id="AEG90133.1"
FT /translation="MPRAGRFQINARNYFITYPRCSLTKEEALSQLKALSYPTNIKFIR
FT VCRELHQDGVPHLHVLIQFEGKFQCTNPRFFDLISTSRSTHFHPNIQGAKSSSDVKAYI
FT EKGGEFLDDGIFQVDARSARGEGQHLAQVYADALNASSKTEALQIIKEKDPKSFFLQFH
FT NISANADRIFQAPPQIYVSPFLSSSFTQVPEDIEVWVSENICSPAARPWRPISIVLEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKAWALKNATFITLHEPL
FT FSSAHQSPTPHSEDQGRQT"
FT gene complement(2253. .2486)
FT /gene="AC4"
FT CDS complement(2253. .2486)
FT /codon_start=1
FT /gene="AC4"
FT /product="C4 protein"
FT /protein_id="AEG90136.1"
FT /translation="MGCLISMFSSSSKGSSNVPTHDSSISFPHPDPHISIRTFRELNHR
FT PMSKLILKREGNFLTMEFSRSMPEVQGGRVSI"
XX
SQ Sequence 2800 BP; 729 A; 560 C; 708 G; 803 T; 0 other;
jf909133 Length: 2800 05-DEC-2012 Type: N Check: 654 ..
1 accggatggc cgcgcccgaa aagcaggtgg accccacagg atggccgcgc
51 ccgtgaaaga aagtggtccc cgcgcacttg ttttggtcgg ccagtcatat
101 tcacgcgtga aagtctagat atttgttgtt ggtctttata gacttcgtcg
151 cgaagtagtg gagcgcgtca acatgtggga tccattgttg aacgatttcc
201 ccgaaactgt tcacggtttc cgttctatgc ttgccgttaa atatctgtta
251 catctggaac agcaatacga tcgcggtact gtcggggctg agtatatacg
301 ggatctaata ggggttctac ggtgtaagag ttatgtcgaa gcgaccagga
351 gatataataa tctcaacacc cgtatccaag gtgcggagga ggctgaactt
401 cgacagccca tacacgaacc gtgttgttgc ccccactgtc cgcgtcacca
451 gaagcaaaat atgggccaac aggcccatgt atcggaagcc caagatgtac
501 agaatgtatc gaagcccaga tgtccctaag ggctgtgaag gcccatgtaa
551 ggttcagtcc tatgaacaga gggatgatgt taagcacacg ggtatggttc
601 gatgtgtcag tgatgttact cgtgggtcag gtattacgca tagagtcggg
651 aagaggtttt gtgttaagtc catatatata ttgggcaaga tctggatgga
701 tgagaatatc aagaagcaaa atcatacgaa ccatgttatg ttcttccttg
751 ttcgagatag aaggccttat ggtccgagtc cgcaagattt tggacaagtg
801 ttcaacatgt ttgataatga acctactact gcgactgtga aaaatgatct
851 tagggaccgg tatcaggtgt tacgtaaatt ctatgcgact gttgttggtg
901 gaccctctgg gatgaaggaa caagctctgg ttaagaggtt ttttaggatc
951 aataatcatg tagtgtataa tcatcaggaa cagtccaagt atgagaatca
1001 tactgagaat gcgttgttat tgtatatggc atgtacacat gcctcgaatc
1051 ctgtgtacgc gacgctgaaa atacgcatct atttctatga tgcagtgaca
1101 aattaataaa ggttgaattt tattgcatgt tgctccgtaa cttggagcgt
1151 gtttagtaat acagcgtaca gaacatgatc aacagcctga agtacagtgt
1201 taatggaaat aacgcctatc atatctaaat acttgagcac ttgatatcta
1251 aatactttta agaaacgacc agtctgaggc cgtaaggtcg tccagacctt
1301 gaagttgaga aaacacttgt gaatctccaa tgccttccgg aggttgtggt
1351 tgaaccgtat ctggagtgtg atgatgtcgt ggttcatgtt ccctggccgc
1401 ttgtcgtggt tggtgatttc gaaatagagg ggatttgtta ttgcccagat
1451 aaaaacgcca ttcgttgctt gaggcgcagt gatgagttcc cctgtgcgag
1501 aatccatgat tgatgcagtc gatatggaga tagaacgagc atccgcattc
1551 gaggtctacc cgcctacgtc tgacggccct ggtcttcgct gtgcggtgtt
1601 ggactttgat gggcactaga gaacaatggc tcgtggaggg tgatgaaggt
1651 ggcattcttt aaagcccagg ctttaaggga ctggttcttt tcctcgtcca
1701 gaaactcttt atatgatgat gttggtccag gattgcagag gaagatagtg
1751 ggaatgccgc ctttaatttg aattggcttc ccgtactttg tattgctttg
1801 ccagtctctt tgggccccca tgaattcttt gaaatgcttt agatagtgcg
1851 ggtctacgtc gtcaatgacg ttgtaccatg cgtcgtttga atataccttt
1901 ggagacagat ccaagtgtcc acatagataa ttatggggtc ccagtgaacg
1951 agcccacatt gttttccctg ttcggctatc accttcgaga acaatactga
2001 tcggtctcca tggccgcgca gcgggactgc atatattttc tgatacccat
2051 acttctatgt cttcggggac ttgtgtaaat gatgaggata agaacggact
2101 aacataaatt tggggcggag cctggaagat tctatccgcg ttagcagata
2151 tgttatggaa ctgtaaaaaa aaggactttg gatctttttc tttaataatc
2201 tgaagagctt ctgttttaga agaagcattc aacgcgtctg catatacctg
2251 agctaaatgc tgaccctccc cccttgcact tctggcatcg acctggaaaa
2301 ttccatcgtc aagaaattcc cctccctttt caatataagc tttgacatcg
2351 gacgatgatt tagctccctg aatgttcgga tggaaatgtg tggatctgga
2401 tgtggaaatg agatcgaaga atcgtgggtt ggtacattgg aacttccctt
2451 cgaactggat gagaacatgg agatgaggca ccccatcctg atgtagttct
2501 cggcaaaccc taatgaattt gatattcgtc gggtaagaca gtgcttttaa
2551 ttgggaaagt gcctcttcct ttgttaatga gcatctggga taggttatga
2601 aataatttct ggcatttatt tgaaaacgac cggctctcgg catatttgct
2651 gtcgttttgt atcggtggac actcaaaact ccaggggaac ggtggaatgg
2701 tggacattat ataggatgtc ccccaatggc attcgtgtaa ataggtagac
2751 ttccatttca aatttgaatg tcgaatattg gcggccatcc gattaatatt