Sequence of DPV East African cassava mosaic Kenya virus
East African cassava mosaic Kenya virus isolate Comoros:Moheli:MO12BS3:2009 segment DNA-A, complete sequence.
ACC No: JF909135
Dated: 2012-12-05 | Length: 2798 | CRC: -1932303380
ID JF909135; SV 1; circular; genomic DNA; STD; VRL; 2798 BP.
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AC JF909135;
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DT 21-JUN-2012 (Rel. 113, Created)
DT 05-DEC-2012 (Rel. 115, Last updated, Version 3)
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DE East African cassava mosaic Kenya virus isolate Comoros:Moheli:MO12BS3:2009
DE segment DNA-A, complete sequence.
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KW .
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OS East African cassava mosaic Kenya virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RC Publication Status: Online-Only
RP 1-2798
RX PUBMED; 23186303.
RA De Bruyn A., Villemot J., Lefeuvre P., Villar E., Hoareau M.,
RA Harimalala M., Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B.,
RA Harkins G.W., Varsani A., Martin D.P., Lett J.M.;
RT "East African cassava mosaic-like viruses from Africa to Indian ocean
RT islands: molecular diversity, evolutionary history and geographical
RT dissemination of a bipartite begomovirus";
RL BMC Evol. Biol. 12(1):228-228(2012).
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RN [2]
RP 1-2798
RA Villemot J., Lefeuvre P., Villar E., Hoareau M., Harimalala M.,
RA Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., Varsani A., Martin D.P.,
RA Lett J.-M.;
RT ;
RL Submitted (24-MAR-2011) to the INSDC.
RL UMR PVBMT, CIRAD, 7, chemin de l'IRAT, Saint-Pierre, Reunion 97410, France
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FH Key Location/Qualifiers
FH
FT source 1. .2798
FT /organism="East African cassava mosaic Kenya virus"
FT /segment="DNA-A"
FT /host="Manihot esculenta (cassava)"
FT /isolate="Comoros:Moheli:MO12BS3:2009"
FT /mol_type="genomic DNA"
FT /country="Comoros:Moheli"
FT /lat_lon="12.26 S 43.67 E"
FT /collection_date="2009"
FT /db_xref="taxon:393599"
FT gene 174. .530
FT /gene="AV2"
FT CDS 174. .530
FT /codon_start=1
FT /gene="AV2"
FT /product="movement protein"
FT /protein_id="AEG90144.1"
FT /translation="MWDPLVNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL
FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS
FT EAQDVQNVSKPRCA"
FT gene 334. .1107
FT /gene="AV1"
FT CDS 334. .1107
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="AEG90143.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA
FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGTVRCVSDVTRGSGITHR
FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPNGQSPQDFGQVFNMFDNE
FT PTTATVKNDLRDRYQVLRKFYATVVGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN"
FT gene complement(1104. .1508)
FT /gene="AC3"
FT CDS complement(1104. .1508)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer"
FT /protein_id="AEG90147.1"
FT /translation="MDSRTGELITAPQAKNGVFTWEITNPLYFDITNHDRRPGNMNHDI
FT ITFQIRFNHNIRKALGIHKCFLNFKVWTTLRPPTGLFLKVFRYQVLKYLDMIGVISINT
FT VIQAVDHVLYNVLLNTLQVTEHHAIKFNLY"
FT gene complement(1249. .1656)
FT /gene="AC2"
FT CDS complement(1249. .1656)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcription activator protein"
FT /protein_id="AEG90146.1"
FT /translation="MPPSSPSTSHCSQVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI
FT DCINHGFSHRGTHHCASSKEWRFYLGNNKSPLFRHHQPRQETREHEPRHHHIPDTVQPQ
FT HPEGLGDSQVFSQLQGLDDLTASDWSFLKSI"
FT gene complement(1580. .2644)
FT /gene="AC1"
FT CDS complement(1580. .2644)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication associated protein"
FT /protein_id="AEG90145.1"
FT /translation="MPRAGRFSIKAKNYFLTYPKCSLSKEEALNQLQQLQTPTNKLFIK
FT ICRELHENGEPHLHALIQFEGKYNCTNQRFFDLISPSRSAHFHPNIQGAKSSSDVKSYL
FT DKDGDTIQWGEFQIDGRSARGGQQSANDAYAKALNSANKSEALNVIRELAPKDFVLQFH
FT NLNSNLERIFQEPLTPYISPFLSSSFTNVPEELEAWVSENVMGSAARPWRPSSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKAWALKNATFITLHEPL
FT FSSAHQSPTPHSED"
FT gene complement(2197. .2493)
FT /gene="AC4"
FT CDS complement(2197. .2493)
FT /codon_start=1
FT /gene="AC4"
FT /product="C4 protein"
FT /protein_id="AEG90148.1"
FT /translation="MKMGNLICMPSFSSKASTIVPTNDSSTSSPLPGQPISTQIFRELN
FT QAPTSSPIWIRTETPSNGASFRSTDDLLEADNNPPMTLTPRLLTQQISQRLLM"
XX
SQ Sequence 2798 BP; 725 A; 551 C; 731 G; 791 T; 0 other;
jf909135 Length: 2798 05-DEC-2012 Type: N Check: 9862 ..
1 accggatggc cgcgcccgaa aaagcaggtg gaccctacaa gatggccgcg
51 cctggtaaag aaagtggtcc ccgcgcactt gtgttggtcg gccagtcata
101 ttcacgcgtg aaagtctaga tatttgttgt ttgtctttat agacttcgtc
151 gcgaagtaga tgagcgcgtc aacatgtggg atccattggt gaacgatttt
201 cctgaaaccg ttcacggttt ccgttctatg cttgctgtta aatacctgtt
251 acatctggaa caggaatacg atcgcggtac tgtcggggcg gagtatatac
301 gtgatttaat aggggttcta cggtgtaaga gttatgtcga agcgaccagg
351 agatataata atctcaacac ccgtatccaa ggtgcggagg aggctgaact
401 tcgacagccc atacacgaac cgtgttgttg cccccactgt ccgcgtcacc
451 agaagcaaaa tatgggccaa caggcccatg tatcggaagc ccaagatgta
501 cagaatgtat cgaagcccag atgtgcctaa gggctgtgaa ggcccatgta
551 aggttcagtc ctatgaacag agggatgatg tgaagcacac gggtaccgtc
601 cgatgtgtca gtgatgttac tcgtggatca ggcattaccc atagagtcgg
651 gaagaggttt tgtgtgaagt ccatatatat attgggcaag atttggatgg
701 atgagaatat caagaagcaa aatcatacga atcatgttat gttcttcctt
751 gttcgagata gaaggcctaa tggtcagagt cctcaagatt ttggacaagt
801 gttcaacatg tttgataatg aacctactac ggcaactgtg aagaatgatc
851 ttagggaccg atatcaggtg ttacgtaaat tctatgcgac tgttgttggt
901 ggaccctcag ggatgaagga acaagctctg gttaagaggt tttttaggat
951 caataatcat gtagtgtata atcatcagga acaggccaag tatgagaatc
1001 atactgagaa tgcgttgtta ttgtatatgg catgtacaca tgcctcgaat
1051 cctgtgtacg ctacgctgaa aatacgcatc tatttctatg atgcagtgac
1101 aaattaataa aggttgaatt ttattgcatg gtgctccgta acttggagtg
1151 tgttgagtaa tacattgtac agaacatgat caacagcttg aattacagtg
1201 ttaatggaaa taacgcctat catatctaaa tacttgagca cttgatatct
1251 aaatactttt aagaaaagac cagtcggagg ccgtaaggtc gtccagacct
1301 tgaagttgag aaaacacttg tgaatcccca aggccttccg gatgttgtgg
1351 ttgaaccgta tctggaatgt gatgatgtcg tggttcatgt tccctggtct
1401 cctgtcgtgg ttggtgatgt cgaaatagag gggatttgtt atttcccagg
1451 taaaaacgcc attctttgct tgaggcgcag tgatgagttc ccctgtgcga
1501 gaatccatga ttgatgcagt cgatatggag atagaacgag cagccgcatt
1551 cgaggtctac ccgcctacgt ctgacggccc tagtcttcgc tgtgcggtgt
1601 tggactttga tgggcacttg agaacaatgg ctcgtggagg gtgatgaagg
1651 tggcattctt taaagcccag gctttaaggg actggttctt ttcctcgtcc
1701 agaaactctt tatatgatga tgttggtcct ggattgcata ggaagatagt
1751 gggaatgccg cctttaattt gaattggctt cccgtatttt gtattgcttt
1801 gccagtccct ttgggccccc atgaattctt tgaaatgttt gaggtagtgg
1851 gggtcgacgt catcaatgac gttgtaccat gcgtcgttgc tgtatacctt
1901 tggactgaga tccaggtgtc cacacaagta gttatgtggt cccaaagagc
1951 gagcccacat tgtcttccct gtcctactat ctccctcgat tacgatacta
2001 ctgggtctcc atggccgcgc agcggaaccc atcacgttct cggaaaccca
2051 tgcttcaagt tcctcaggaa cgttagtgaa agaagaagaa agaaagggag
2101 aaatataagg agtgagaggc tcttgaaaaa tcctctctaa attgctattt
2151 aaattatgaa actgtaaaac aaaatctttt ggggctagtt cccgtattac
2201 attaagagcc tctgacttat ttgctgagtt aagagccttg gcgtaagcgt
2251 cattggcgga ttgttgtccg cctcgagcag atcgtccgtc gatctgaaac
2301 tcgccccatt ggatggtgtc tccgtcctta tccagatagg acttgacgtc
2351 ggagcttgat ttagctccct gaatatttgg gtggaaatgg gctgaccggg
2401 aaggggagat gaggtcgaag aatcgttggt tggtacaatt gtacttgcct
2451 tcgaactgaa tgagggcatg cagatgaggt tccccatttt catggagctc
2501 tctgcagatc ttgatgaaca atttattggt tggggtttgg agttgttgga
2551 gctgattcaa ggcctcttct ttcgatagag aacatttggg atatgtgagg
2601 aaatagtttt tggctttgat gctaaaacga ccagcccttg gcatttgcgc
2651 tgtcgtatag caatcggggg gcactcaaag tctgtagcaa tcgggggaat
2701 gggggggcaa tttatatgat gccccctaaa tggcatttat gtaatatcct
2751 catgaaatgt gaatttcaaa cgtggaaagc ggccatccgt ataatatt