Sequence of DPV East African cassava mosaic virus
East African cassava mosaic virus-Kenya isolate Comoros:Moheli:MO29AN3:2009 segment DNA-A, complete sequence.
ACC No: JF909149
Dated: 2012-12-05 | Length: 2801 | CRC: -764988289
ID JF909149; SV 1; circular; genomic DNA; STD; VRL; 2801 BP.
XX
AC JF909149;
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DT 21-JUN-2012 (Rel. 113, Created)
DT 05-DEC-2012 (Rel. 115, Last updated, Version 3)
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DE East African cassava mosaic virus-Kenya isolate Comoros:Moheli:MO29AN3:2009
DE segment DNA-A, complete sequence.
XX
KW .
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OS East African cassava mosaic virus-Kenya
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RC Publication Status: Online-Only
RP 1-2801
RX PUBMED; 23186303.
RA De Bruyn A., Villemot J., Lefeuvre P., Villar E., Hoareau M.,
RA Harimalala M., Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B.,
RA Harkins G.W., Varsani A., Martin D.P., Lett J.M.;
RT "East African cassava mosaic-like viruses from Africa to Indian ocean
RT islands: molecular diversity, evolutionary history and geographical
RT dissemination of a bipartite begomovirus";
RL BMC Evol. Biol. 12(1):228-228(2012).
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RN [2]
RP 1-2801
RA Villemot J., Lefeuvre P., Villar E., Hoareau M., Harimalala M.,
RA Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., Varsani A., Martin D.P.,
RA Lett J.-M.;
RT ;
RL Submitted (24-MAR-2011) to the INSDC.
RL UMR PVBMT, CIRAD, 7, chemin de l'IRAT, Saint-Pierre, Reunion 97410, France
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FH Key Location/Qualifiers
FH
FT source 1. .2801
FT /organism="East African cassava mosaic virus-Kenya"
FT /segment="DNA-A"
FT /host="Manihot esculenta (cassava)"
FT /isolate="Comoros:Moheli:MO29AN3:2009"
FT /mol_type="genomic DNA"
FT /country="Comoros:Moheli"
FT /lat_lon="12.36 S 43.68 E"
FT /collection_date="2009"
FT /db_xref="taxon:1229189"
FT gene 174. .530
FT /gene="AV2"
FT CDS 174. .530
FT /codon_start=1
FT /gene="AV2"
FT /product="movement protein"
FT /protein_id="AEG90228.1"
FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQQYDRGTVGAEYIRDL
FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS
FT EAQDVQNVSKPRCP"
FT gene 334. .1107
FT /gene="AV1"
FT CDS 334. .1107
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="AEG90227.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA
FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQKDDVKHTGMVRCVSDVTRGSGITHR
FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDNE
FT PTTATVKNDLRDRYQVLRKFYATVVGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN"
FT gene complement(1104. .1508)
FT /gene="AC3"
FT CDS complement(1104. .1508)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer"
FT /protein_id="AEG90231.1"
FT /translation="MDSRTGELITAPQATNGVFTWEITNPLYFEITNHDKRPGNMNHDI
FT ITLQIRFNHNLRKALGIHKCFLNFKIWTTLRPQTGRFLKVFKYQVLKYLDMIGVISINT
FT VLQAVDHVMYDVLLNTLQVTEQHAIKFNLY"
FT gene complement(1249. .1656)
FT /gene="AC2"
FT CDS complement(1249. .1656)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcription activator protein"
FT /protein_id="AEG90230.1"
FT /translation="MPPSSPSTSHCSLVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI
FT DCINHGFSHRGTHHCASSNEWRFYLGNNKSPLFRNHQPRQAAREHEPRHHHTPDTVQPQ
FT PPEGIGDSQVFSQLQDLDDLTASDWSFLKSI"
FT gene complement(1565. .2644)
FT /gene="AC1"
FT CDS complement(1565. .2644)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication associated protein"
FT /protein_id="AEG90229.1"
FT /translation="MPRAGRFQINARNYFITYPRCSLTKEEALSQLKALSYPTNIKFIR
FT VCRELHQDGVPHLHVLIQFEGKFQCTNPRFFDLISTSRSTHFHPNIQGAKSSSDVKAYI
FT EKGGEFLDDGIFQVDARSARGEGQHLAQVYADALNASSKTEALQIIKEKDPKSFFLQFH
FT NISANADRIFQAPPQTYVSPFLSSSFTQVPEDIEVWVSENICSPAARPWRPISIVLEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLEEEKNQSLKAWALKNATFITLHEPL
FT FSSAHQSPTPHSEDQGRQT"
FT gene complement(2254. .2487)
FT /gene="AC4"
FT CDS complement(2254. .2487)
FT /codon_start=1
FT /gene="AC4"
FT /product="C4 protein"
FT /protein_id="AEG90232.1"
FT /translation="MGCLISMFSSSSKGSSNVPTQDSSISFPHPDPHISIRTFRELNHR
FT PMSKLILKREGNFLTMEFSRSMPEVQGGRASI"
XX
SQ Sequence 2801 BP; 730 A; 556 C; 710 G; 805 T; 0 other;
jf909149 Length: 2801 05-DEC-2012 Type: N Check: 4934 ..
1 accggatggc cgcgcccgaa aaagcaggtg gaccccacag gatggccgcg
51 cccgtgagag aaagtggtcc ccgcgcactt gttttggtcg gccagtcata
101 ttcacgcgtg aaagtctaga tatttgttgt tggtctttat agacttcgtc
151 gcgaagtagt ggagcgcgtc aacatgtggg atccattgtt gaacgatttc
201 cccgaaaccg ttcacggttt ccgttctatg cttgctgtta aatacctgtt
251 acatctggaa cagcaatacg atcgcggtac tgttggggct gagtatatac
301 gggatctaat aggggttcta cggtgtaaga gttatgtcga agcgaccagg
351 agatataata atctcaacac ccgtatccaa ggtgcggagg aggctgaact
401 tcgacagccc atacacgaac cgtgttgttg cccccactgt ccgcgtcacc
451 agaagcaaaa tatgggccaa caggcccatg tatcggaagc ccaagatgta
501 cagaatgtat cgaagcccag atgtccctaa gggctgtgaa ggcccatgta
551 aggttcagtc ctatgaacag aaggatgatg ttaagcacac tggtatggtt
601 cgatgtgtca gtgatgttac tcgtgggtca ggtattactc atagagtcgg
651 gaagaggttt tgtgttaagt ccatatatat actgggcaag atctggatgg
701 atgagaatat caagaagcaa aatcatacga accatgttat gttcttcctt
751 gtgcgagata gaaggcctta tggtccgagt cctcaagatt ttggacaagt
801 gttcaacatg tttgataatg aacctactac ggcaactgtg aaaaatgatc
851 ttagggaccg gtatcaggtg ttacgtaaat tctatgcgac tgttgttggt
901 ggaccctctg ggatgaagga acaagctctg gttaagaggt tttttaggat
951 caataatcat gtagtgtata atcatcagga acaggccaag tatgagaatc
1001 atacggagaa tgcgttgtta ttgtatatgg catgtacaca tgcctcgaat
1051 cctgtgtatg ctacgctgaa aatacgcatc tatttctatg atgcagtgac
1101 aaattaataa aggttgaatt ttattgcatg ttgctccgta acttggagcg
1151 tgttgagtaa tacatcgtac ataacatgat caacagcctg aagtacagtg
1201 ttaatggaaa taacgcctat catatctaaa tacttgagca cttgatattt
1251 aaatactttt aagaaacgac cagtctgagg ccgtaaggtc gtccagatct
1301 tgaagttgag aaaacacttg tgaatcccca atgccttccg gaggttgtgg
1351 ttgaaccgta tctggagtgt gatgatgtcg tggttcatgt tccctggccg
1401 cttgtcgtgg ttggtgattt cgaaatagag gggatttgtt atttcccagg
1451 taaaaacgcc attcgttgct tgaggcgcag tgatgagttc ccctgtgcga
1501 gaatccatgg ttgatgcagt cgatatggag atagaacgag cagccgcatt
1551 cgaggtctac ccgcctacgt ctgacggccc tggtcttcgc tgtgcggtgt
1601 tggactttga tgggcactag agaacaatgg ctcgtggagg gtgatgaagg
1651 tggcattctt taaagcccag gctttaaggg attggttctt ttcctcttcc
1701 agaaactctt tatatgatga tgttggtcca ggattacaga ggaagatagt
1751 gggaatgccg cctttaattt gaattggctt cccgtacttt gtattgcttt
1801 gccagtctct ttgggccccc atgaattctt tgaaatgctt tagatagtgc
1851 gggtctacgt cgtcaatgac gttgtaccat gcgtcgtttg aatatacctt
1901 tggagacaga tccaggtgtc cacatagata attatggggt cccagtgaac
1951 gagcccacat ggttttccct gttcggctat caccttcgag aacaatactg
2001 atcggtctcc atggccgcgc agcgggactg catatatttt ctgataccca
2051 tacttctatg tcttcgggga cttgtgtaaa tgatgatgat aagaacggac
2101 taacataagt ttggggcgga gcctggaaga ttctatccgc gttagcagat
2151 atgttatgga actgtaaaaa aaaggacttt ggatcttttt ctttaataat
2201 ctgaagagct tctgttttag aagaagcatt caacgcgtct gcatatactt
2251 gagctaaatg ctggccctcc ccccttgcac ttctggcatc gacctggaaa
2301 attccatcgt caagaaattc ccctcccttt tcaatataag ctttgacatc
2351 ggacgatgat ttagctccct gaatgttcgg atggaaatgt gtggatctgg
2401 atgtggaaat gagatcgaag aatcttgggt tggtacattg gaacttccct
2451 tcgaactgga tgagaacatg gagatgaggc accccatcct gatgtagttc
2501 tcggcaaacc ctaatgaatt tgatattcgt cgggtaagaa agggctttta
2551 attgggaaag tgcctcttcc tttgttaatg agcatcgggg ataggtaatg
2601 aaataatttc tggcatttat ttgaaaacga ccggctctcg gcatatttgc
2651 tgtcgttttg aatcggtgga cactcaaaac tccaggggaa cggtggaatg
2701 gtggacatta tataggatgt cccccaatgg cattcgtgta aataggtaga
2751 cttccatttc aaatttgaat gtcgaatatt ggcggccatc cgattaatat
2801 t