Sequence of DPV East African cassava mosaic virus
East African cassava mosaic virus-Kenya isolate Seychelles:Praslin:SC22B15:2009 segment DNA-A, complete sequence.
ACC No: JF909162
Dated: 2012-12-05 | Length: 2801 | CRC: 389932637
ID JF909162; SV 1; circular; genomic DNA; STD; VRL; 2801 BP.
XX
AC JF909162;
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DT 21-JUN-2012 (Rel. 113, Created)
DT 05-DEC-2012 (Rel. 115, Last updated, Version 3)
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DE East African cassava mosaic virus-Kenya isolate
DE Seychelles:Praslin:SC22B15:2009 segment DNA-A, complete sequence.
XX
KW .
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OS East African cassava mosaic virus-Kenya
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RC Publication Status: Online-Only
RP 1-2801
RX PUBMED; 23186303.
RA De Bruyn A., Villemot J., Lefeuvre P., Villar E., Hoareau M.,
RA Harimalala M., Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B.,
RA Harkins G.W., Varsani A., Martin D.P., Lett J.M.;
RT "East African cassava mosaic-like viruses from Africa to Indian ocean
RT islands: molecular diversity, evolutionary history and geographical
RT dissemination of a bipartite begomovirus";
RL BMC Evol. Biol. 12(1):228-228(2012).
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RN [2]
RP 1-2801
RA Villemot J., Lefeuvre P., Villar E., Hoareau M., Harimalala M.,
RA Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., Varsani A., Martin D.P.,
RA Lett J.-M.;
RT ;
RL Submitted (24-MAR-2011) to the INSDC.
RL UMR PVBMT, CIRAD, 7, chemin de l'IRAT, Saint-Pierre, Reunion 97410, France
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FH Key Location/Qualifiers
FH
FT source 1. .2801
FT /organism="East African cassava mosaic virus-Kenya"
FT /segment="DNA-A"
FT /host="Manihot esculenta (cassava)"
FT /isolate="Seychelles:Praslin:SC22B15:2009"
FT /mol_type="genomic DNA"
FT /country="Seychelles:Praslin"
FT /lat_lon="4.35 S 55.76 E"
FT /collection_date="2009"
FT /db_xref="taxon:1229189"
FT gene 174. .530
FT /gene="AV2"
FT CDS 174. .530
FT /codon_start=1
FT /gene="AV2"
FT /product="movement protein"
FT /protein_id="AEG90306.1"
FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL
FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS
FT EAQDVQNVSKPRCP"
FT gene 334. .1107
FT /gene="AV1"
FT CDS 334. .1107
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="AEG90305.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA
FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITHR
FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDNE
FT PTTATVKNDLRDRYQVLRKFYATVVGGPSGMKEQALVKRFFRMNNHVVYNHQEQAKYEN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN"
FT gene complement(1104. .1508)
FT /gene="AC3"
FT CDS complement(1104. .1508)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer"
FT /protein_id="AEG90309.1"
FT /translation="MDSRTGELITAPQAKNGAFTWEITNPLYFAITNHDKRPGNMNHDI
FT ITLQIRFNHNLRKALGIHKCFLNFKVWTTLRPQTGRFLRVFRYQVLKYLDMIGVISINT
FT VLRAVDHVLYDVLLNTLQVTETHEIKFNIY"
FT gene complement(1249. .1656)
FT /gene="AC2"
FT CDS complement(1249. .1656)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcription activator protein"
FT /protein_id="AEG90308.1"
FT /translation="MPPSSPSKSHCSPVPIKVQHRTAKHRALRRRRVDLECGCSFYLHI
FT DCINHGFSHRGTHHCASSKEWRFYLGNNKSPLFRNHQPRQEAREHEPRHHHTPDTIQPQ
FT PPEGIGDSQVFSQLQGLDDLTASDWSFLKSI"
FT gene complement(1571. .2644)
FT /gene="AC1"
FT CDS complement(1571. .2644)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication associated protein"
FT /protein_id="AEG90307.1"
FT /translation="MPRVGRFQINAKNYFITYPRCSLTKEEVLSQLKALSYPTNIKFIR
FT VCRELHQDGVPHLHVLIQFEGKFQCTNQRFFDLISPSRSTHFHPNIQGAKSSSDVKAYI
FT EKGGEFLDDGIFQVDARSARGEGQHLAQVYADALNASSKSEALQIIKEKDPKSFFLQFH
FT NISANADRIFQAPPQTYVSPFLSSSFTDVPDDVEIWVSENICSPAARPWRPISIVLEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKAWALKNATFVSLQEPL
FT FSSAHQSPTPHSEAQGT"
FT gene complement(2254. .2487)
FT /gene="AC4"
FT CDS complement(2254. .2487)
FT /codon_start=1
FT /gene="AC4"
FT /product="C4 protein"
FT /protein_id="AEG90310.1"
FT /translation="MGCLISMFSSNSKASSNVQTSDSSISFPHPDQHISIRTFRELSHH
FT PMSKLTLKREGNFLTMEFSRSMPEVHGERASI"
XX
SQ Sequence 2801 BP; 734 A; 567 C; 710 G; 790 T; 0 other;
jf909162 Length: 2801 05-DEC-2012 Type: N Check: 5185 ..
1 accggatggc cgcgcccgaa aaagcatgtg gaccccatca taagcacgcg
51 cccgtcaaag aaagtggtcc ccgcgcactt gttgcggtcg gccagtcata
101 ttcacgcgtg aaagtctaga tacttgtttt ttgtcgttat agacttcgtc
151 gcgaagtagt gaagcgcgtc aacatgtggg atccattgtt gaacgatttc
201 cctgaaaccg ttcacggttt ccgttctatg cttgctgtta aatacttgtt
251 acatcttgaa caggaatacg atcgcggtac tgtcggggcg gagtatatac
301 gggatctaat aggggttcta cggtgtaaga gttatgtcga agcgaccagg
351 agatataata atctcaacac ccgtatccaa ggtgcggagg aggctgaact
401 tcgacagccc atacacgaac cgtgttgttg cccccactgt ccgcgtcacc
451 agaagcaaaa tatgggccaa caggcccatg tatcggaagc ccaagatgta
501 cagaatgtat cgaagcccag atgtccctaa gggctgtgaa ggcccatgta
551 aggttcagtc ttatgaacag agggatgatg tgaagcacac tggtatggtt
601 cgatgtgtta gtgatgttac tcgtgggtca ggcattaccc atagagtcgg
651 gaagaggttc tgtgtgaagt ccatatatat attgggcaag atctggatgg
701 atgagaatat caagaagcaa aatcatacga accatgttat gttcttcctc
751 gttcgagata gaaggcctta tgggccgagc ccgcaagatt ttggacaagt
801 gttcaacatg tttgacaatg aaccgactac cgcaactgtg aagaatgatc
851 ttagggaccg gtatcaggtg ttacgaaaat tctatgcgac tgttgttggg
901 ggaccctccg ggatgaagga acaagctctg gttaagaggt tttttaggat
951 gaataatcat gttgtgtata atcatcagga acaggccaag tatgagaatc
1001 atactgagaa tgcgttgtta ttgtatatgg catgtacaca tgcctcaaat
1051 ccagtgtacg ctacgctgaa aatacgcatc tatttctatg atgcagtgac
1101 aaattaataa atattaaatt ttatttcatg agtctccgta acttggagtg
1151 tgtttagtaa tacatcgtac agaacatgat caaccgctcg aagtacagtg
1201 ttaatggaaa taacgcctat catatctaaa tacttgagca cctgatatct
1251 aaatactctt aagaaacgac cagtctgagg ccgtaaggtc gtccagacct
1301 tgaagttgag aaaacacttg tgaatcccca atgccttccg gaggttgtgg
1351 ttgaatcgta tctggagtgt gatgatgtcg tggttcatgt tccctggcct
1401 cttgtcgtgg ttggtgattg cgaaatagag gggatttgtt atttcccagg
1451 taaaagcgcc attctttgct tgaggcgcag tgatgagttc ccctgtgcga
1501 gaatccatgg ttgatgcagt cgatatggag atagaacgag cagccgcatt
1551 cgaggtctac ccgcctacgt ctaagtgccc tgtgcttcgc tgtgcggtgt
1601 tggactttga tgggcactgg agaacaatgg ctcttggagg gagacgaagg
1651 tggcattctt taaagcccag gctttaaggg actgattctt ttcctcgtcc
1701 agaaactctt tatatgatga tgttggtcct ggattgcaga ggaagatagt
1751 gggaatgccg cctttaattt gaattggctt cccgtacttc gtattgcttt
1801 gccagtccct ttgggccccc atgaactctt tgaaatgctt tagataatgc
1851 gggtctacgt cgtcaatgac gttgtaccat gcgtcgtttg aatatacctt
1901 tggagacaga tccaggtgtc cacatagata attatggggt ccaagtgaac
1951 gagcccacat ggttttccct gttcggctat caccttctag aacaatactg
2001 atcggtctcc atggccgcgc agcgggactg catatattct ccgataccca
2051 tatttctacg tcgtctggga cgtctgtaaa tgatgaggat aagaacggac
2101 taacgtaagt ttgtggcgga gcctggaaga ttctatctgc gttagcagat
2151 atgttatgga actgtaaaaa aaatgacttt ggatcttttt ccttaatgat
2201 ctgaagagct tcggatttag aagaagcatt caacgcgtct gcatatacct
2251 gagctaaatg ctggccctct ccccgtgcac ttctggcatc gacctggaaa
2301 attccatcgt caagaaattc ccctcccttt tcaatgtaag ctttgacatc
2351 ggatgatgac ttagctccct gaatgttcgg atggaaatgt gttgatcggg
2401 atggggaaat gagatcgaag aatcgctggt ttgtacattg gaacttgcct
2451 tcgaattgga tgagaacatg gagatgaggc accccatcct gatgtagttc
2501 tctgcaaacc ctaatgaatt ttatattcgt cgggtaagaa agggctttta
2551 attgggaaag gacctcttcc tttgttaatg agcatcgggg ataggtgatg
2601 aaataatttt tggcattgat ttgaaaacga cctactctgg gcatagttgc
2651 tgtcgttttg aatcggggga cactcaaagt ctgtggcaat cggtggaacg
2701 gggggcaatt tatatgatgt cccccaatgg catatgtgta aataggtcga
2751 cttccatttg aaatttaaat gtcgaatatt ggcggccatc cgattaatat
2801 t