Sequence of DPV East African cassava mosaic virus
East African cassava mosaic virus-Kenya isolate Comoros:Mayotte:YT26B24:2004 segment DNA-A, complete sequence.
ACC No: JF909176
Dated: 2012-12-05 | Length: 2801 | CRC: 1423850188
ID JF909176; SV 1; circular; genomic DNA; STD; VRL; 2801 BP.
XX
AC JF909176;
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DT 21-JUN-2012 (Rel. 113, Created)
DT 05-DEC-2012 (Rel. 115, Last updated, Version 3)
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DE East African cassava mosaic virus-Kenya isolate
DE Comoros:Mayotte:YT26B24:2004 segment DNA-A, complete sequence.
XX
KW .
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OS East African cassava mosaic virus-Kenya
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RC Publication Status: Online-Only
RP 1-2801
RX PUBMED; 23186303.
RA De Bruyn A., Villemot J., Lefeuvre P., Villar E., Hoareau M.,
RA Harimalala M., Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B.,
RA Harkins G.W., Varsani A., Martin D.P., Lett J.M.;
RT "East African cassava mosaic-like viruses from Africa to Indian ocean
RT islands: molecular diversity, evolutionary history and geographical
RT dissemination of a bipartite begomovirus";
RL BMC Evol. Biol. 12(1):228-228(2012).
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RN [2]
RP 1-2801
RA Villemot J., Lefeuvre P., Villar E., Hoareau M., Harimalala M.,
RA Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., Varsani A., Martin D.P.,
RA Lett J.-M.;
RT ;
RL Submitted (24-MAR-2011) to the INSDC.
RL UMR PVBMT, CIRAD, 7, chemin de l'IRAT, Saint-Pierre, Reunion 97410, France
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FH Key Location/Qualifiers
FH
FT source 1. .2801
FT /organism="East African cassava mosaic virus-Kenya"
FT /segment="DNA-A"
FT /host="Manihot esculenta (cassava)"
FT /isolate="Comoros:Mayotte:YT26B24:2004"
FT /mol_type="genomic DNA"
FT /country="Mayotte"
FT /lat_lon="12.92 S 45.16 E"
FT /collection_date="2004"
FT /db_xref="taxon:1229189"
FT gene 174. .530
FT /gene="AV2"
FT CDS 174. .530
FT /codon_start=1
FT /gene="AV2"
FT /product="movement protein"
FT /protein_id="AEG90390.1"
FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL
FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS
FT EAQDVQNVSKPRCP"
FT gene 334. .1107
FT /gene="AV1"
FT CDS 334. .1107
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="AEG90389.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA
FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITHR
FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDNE
FT PTTATVKNDLRDRYQVLRKFYATVVGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN"
FT gene complement(1104. .1508)
FT /gene="AC3"
FT CDS complement(1104. .1508)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer"
FT /protein_id="AEG90393.1"
FT /translation="MDFRTGELITAPQAKNGVFTWEITNPLYFDITNHDKRPGNMNHDI
FT ITLQIRFNHNLRKALAIHKCFLNFKVWTTLRPQTGLFLRVFRYQVLKYLDMIGVISINT
FT VITAVDHVLYDVLLNTLQVTEQHAIKFNLY"
FT gene complement(1249. .1656)
FT /gene="AC2"
FT CDS complement(1249. .1656)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcription activator protein"
FT /protein_id="AEG90392.1"
FT /translation="MPPSSPSMSHCSQVPIKVQHRTAKTRALRRRRVDLECGCSFYLHI
FT DCINHGFSHRGTHHCASSKEWRFYLGNNKSPLFRHHQPRQEAREHEPRHHHTPDTFQPQ
FT PPEGIGDSQVFSQLQGLDDLTASDWSFLKSI"
FT gene complement(1565. .2644)
FT /gene="AC1"
FT CDS complement(1565. .2644)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication associated protein"
FT /protein_id="AEG90391.1"
FT /translation="MPRAGRFQINAKNYFITYPRCSLTKEEALSQLKALSYPTNIKFIR
FT VCRELHQDGVPHLHVLIQFEGKFQCTNQRFFDLISPSRSTHFHPNIQGAKSSSDVKAYI
FT DKGGEFLDDGLFQVDARSARGEGQHLAQVYADALNASSKSEALQIIKEKDPKSFFLQFH
FT NISANADRIFQAPPQTYVSPFLSSSFTHVPEELEVWVSENICSPAARPWRPVSIVLEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLEEEKNQSLKAWALKNATFVTLHEPL
FT FSSAHQSPTPHSEDQGPPT"
FT gene complement(2254. .2487)
FT /gene="AC4"
FT CDS complement(2254. .2487)
FT /codon_start=1
FT /gene="AC4"
FT /product="C4 protein"
FT /protein_id="AEG90394.1"
FT /translation="MGCLISMFSSNSKASSNVQTKDSSISFPHPDQHISIRTFRELNRR
FT PMSRLTLIRAGNFLTMDFSKSMPEVQGGRASI"
XX
SQ Sequence 2801 BP; 732 A; 559 C; 722 G; 788 T; 0 other;
jf909176 Length: 2801 05-DEC-2012 Type: N Check: 8181 ..
1 accggatggc cgcgcccgaa aaagcaggtg gaccccactg tatgaccgcg
51 cccgtgaaag aaagtggtcc ccgcgcactt gggttggtcg gccagtcata
101 ttcacgcgtg aaggcctaga tatttgttgt ttgtctttat agacttcgtc
151 acgaagtagt ggagcgcgtc aacatgtggg atccattgtt gaatgatttt
201 cccgaaaccg ttcacggttt ccgttctatg cttgctgtta aatacctgtt
251 acatctggaa caggaatacg atcgcggtac tgtcggggct gagtatatac
301 gggatctaat aggggttcta cggtgtaaga gttatgtcga agcgaccagg
351 agatataata atctcaacac ccgtatccaa ggtgcggagg aggctgaact
401 tcgacagccc atacacgaac cgtgttgttg cccccactgt ccgcgtcacc
451 agaagcaaaa tatgggccaa caggcccatg tatcggaagc ccaagatgta
501 cagaatgtat cgaagcccag atgtccctaa gggctgtgaa ggcccatgca
551 aggttcagtc gtatgaacag agggatgatg ttaagcacac tggtatggtc
601 cgatgtgtca gtgatgttac tcgtgggtca ggcatcaccc atagagtcgg
651 gaagaggttt tgtgtgaagt ccatatatat attgggcaag atctggatgg
701 atgagaatat caagaagcaa aatcatacga accatgttat gttcttcctc
751 gttcgagata gaaggcctta tggtccgagc ccgcaagatt tcggacaagt
801 gttcaacatg tttgataatg aacctactac ggcaacggtg aagaatgatc
851 tgagggatcg gtatcaggtg ttacgaaaat tctatgcgac cgttgttggt
901 ggaccctccg ggatgaagga acaagcgctg gttaagaggt tttttaggat
951 caataatcat gtagtgtata atcatcagga acaggccaag tatgagaatc
1001 atacggagaa tgcgttgtta ttgtatatgg catgtacaca tgcctcaaat
1051 cctgtgtacg ctactctgaa aatacgcatc tatttctatg atgcagtgac
1101 aaattaataa aggttgaatt ttattgcatg ttgctccgta acttggagtg
1151 tgtttagtaa tacatcgtac agaacatgat caacagctgt aattacagtg
1201 ttaatggaaa taacgcctat catatctaaa tacttgagca cttgatatct
1251 aaatactctt aagaaaagac cagtctgagg ccgtaaggtc gtccagacct
1301 tgaagttgag aaaacacttg tgaatcgcca atgccttccg gaggttgtgg
1351 ttgaaacgta tctggagtgt gatgatgtcg tggttcatgt tccctggcct
1401 cttgtcgtgg ttggtgatgt cgaaatagag gggatttgtt atttcccagg
1451 taaaaacgcc attctttgct tgaggcgcag tgatgagttc ccctgtgcga
1501 aaatccatgg ttgatgcagt cgatatggag atagaacgag cagccacatt
1551 cgaggtcgac ccgcctacgt cggagggccc tggtcttcgc tgtgcggtgt
1601 tggactttga tgggcacttg agaacaatgg ctcatggagg gtgacgaagg
1651 tggcattctt taaagcccag gctttaaggg actgattctt ttcctcttcc
1701 agaaactctt tatatgatga tgttggtcct ggattgcaga ggaagatagt
1751 gggaatgccg cctttaattt gaattggctt cccgtacttt gtattgcttt
1801 gccagtccct ttgggccccc atgaattctt tgaagtgttt gagataatgc
1851 gggtctacgt cgtcaatgac gttgtaccat gcgtcgtttg aatatatctt
1901 tggagacaga tccaggtgtc cacatagata attatggggt cccagtgaac
1951 gagcccacat ggttttcccg gttcggctat caccttcgag aacaatactg
2001 accggtctcc atggccgcgc agcgggactg catatatttt ctgataccca
2051 tacctctagt tcttcgggaa cgtgggtaaa tgatgaggat aagaatggac
2101 taacgtaagt ttgtggcgga gcctggaaga ttctatctgc gttagcagat
2151 atgttatgga actgtaaaaa aaaggacttt ggatcttttt ctttaataat
2201 ttgaagagct tctgatttag aagaagcatt caacgcgtct gcatatacct
2251 gagctaaatg ctggccctcc ccccttgcac ttctggcatc gacttggaaa
2301 agtccatcgt caagaaattc cccgccctta tcaatgtaag ccttgacatc
2351 ggacgacgat ttagctccct gaatgttcgg atggaaatgt gttgatctgg
2401 atggggaaat gagatcgaag aatctttggt ttgtacattg gaacttgcct
2451 tcgaattgga tgagaacatg gagatgaggc accccatcct gatgtagttc
2501 tctgcaaacc ctaatgaatt tgatattcgt cgggtaagaa agggctttta
2551 attgggaaag ggcctcttcc ttggttaatg agcatcgggg ataggttatg
2601 aaataatttt tggcatttat ttgaaaacga ccggctcttg gcatatttgc
2651 tgtcgttttg gatcggggga cactcaaaac tccaggggaa cggtggaatg
2701 gggggcatta tatatgatgt cccccaatgg catatgtgta aatatgtcga
2751 cctccattca aattttgaat tgcgaatatt ggcggccatc cgattaatat
2801 t