Sequence of DPV Tomato leaf curl Sudan virus
Tomato leaf curl Sudan virus isolate Had:tob40:89, complete genome.
ACC No: JF919734
Dated: 2012-12-12 | Length: 2780 | CRC: -1126348485
ID JF919734; SV 1; linear; genomic DNA; STD; VRL; 2780 BP.
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AC JF919734;
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DT 01-JUN-2012 (Rel. 113, Created)
DT 12-DEC-2012 (Rel. 115, Last updated, Version 2)
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DE Tomato leaf curl Sudan virus isolate Had:tob40:89, complete genome.
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KW .
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OS Tomato leaf curl Sudan virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2780
RX DOI; 10.1016/j.virusres.2012.07.014.
RX PUBMED; 22841489.
RA Idris A.M., Abdullah N.M., Brown J.K.;
RT "Leaf curl diseases of two solanaceous species in Southwest Arabia are
RT caused by a monopartite begomovirus evolutionarily most closely related to
RT a species from the Nile Basin and unique suite of betasatellites";
RL Virus Res. 169(1):296-300(2012).
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RN [2]
RP 1-2780
RA Idris A.M., Brown J.K.;
RT ;
RL Submitted (06-MAY-2011) to the INSDC.
RL Plant Sciences, University of Arizona, Tucson, AZ 85721, USA
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FH Key Location/Qualifiers
FH
FT source 1. .2780
FT /organism="Tomato leaf curl Sudan virus"
FT /host="tobacco"
FT /isolate="Had:tob40:89"
FT /mol_type="genomic DNA"
FT /country="Yemen"
FT /collection_date="1989"
FT /db_xref="taxon:270146"
FT gene 150. .500
FT /gene="V2"
FT CDS 150. .500
FT /codon_start=1
FT /gene="V2"
FT /product="precoat protein"
FT /db_xref="GOA:I3QBE3"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:I3QBE3"
FT /protein_id="AFI56622.1"
FT /translation="MWDPLLNEFPESVHGFRCMQAIKYLQAVEQTYEPNTLGHDLIRDL
FT ISVIRARDYVEASRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQASNMDVPAHV
FT PKAQNIQNVSKP"
FT gene 310. .1083
FT /gene="V1"
FT CDS 310. .1083
FT /codon_start=1
FT /gene="V1"
FT /product="coat protein"
FT /db_xref="GOA:I3QBD8"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:I3QBD8"
FT /protein_id="AFI56623.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAAPIVQGTNRRRTW
FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSFDKRHDLKHTGEVLCVSDVTRGNGLTH
FT RVGKRFCIKSIYIVGKVWMDENIKVKNHTNTCMFWLVRDRRPVTTPYGFGELFNMYDNE
FT PSTATIKNDLRDRCQVLKRFTASLSGGQYASKEQCVIRRFYKIYNHIVYNHQEQGKYEN
FT HTENALLLYMACTHASNPVYATLKIRVYFYDSISN"
FT gene complement(1080. .1484)
FT /gene="C3"
FT CDS complement(1080. .1484)
FT /codon_start=1
FT /gene="C3"
FT /product="replication enhancer protein"
FT /note="REp"
FT /db_xref="GOA:I3QBE5"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:I3QBE5"
FT /protein_id="AFI56624.1"
FT /translation="MDSRTGELITAHQAKNGVFIWEINNPLYFKITNHDKRPFNMNKDI
FT ISIQIRFNHNIRKELGIHKCFLNFRIWTNLQPQTGHFLRVFRYQVLRYLDNIGVISINN
FT VIRAVDHVLYNVIAKTIDVTEHHDIKYKFY"
FT gene complement(1225. .1632)
FT /gene="C2"
FT CDS complement(1225. .1632)
FT /codon_start=1
FT /gene="C2"
FT /product="transcriptional activator protein"
FT /note="TrAP"
FT /db_xref="GOA:I3QBE6"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:I3QBE6"
FT /protein_id="AFI56625.1"
FT /translation="MQHSSPSTSRCSQIPIKVQHKLAKKKPVRRRRVDLDCGCSYYIHI
FT NCINHGFTHRGTHHCSSSKEWRFYLGDKQSPLFQDHQPRQEAIQHEQRHNFNTNPIQSQ
FT HQEGVGDSQMFSQLPNLDELTASDWSFLKSI"
FT gene complement(1541. .2620)
FT /gene="C1"
FT CDS complement(1541. .2620)
FT /codon_start=1
FT /gene="C1"
FT /product="replication associated protein"
FT /note="Rep"
FT /db_xref="GOA:I3QBE7"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:I3QBE7"
FT /protein_id="AFI56626.1"
FT /translation="MAPPKRFQINCKNYFLTYPQCSLTKEEALSQLKNINTPTNKKYIK
FT VCRELHENGEPHLHVLIQFEGKFKCQNQRFFDLVSPSRAAHFHPNIQGAKSSSDVKSYI
FT DKDGDTLEWGEFQIDGRSARGGQQTANDAAAEALNTGSASAALQIIREKLPKDFIFQYH
FT NLNNNLDRIFQEPPAPYISPFLSSSFNQVPEELEVWVSENVMDPAARPWRPNSIVIEGD
FT SRTGKTVWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPSIFLCNPGPTSSYREYLDEEKNISXKNWTLKNATFVTLNEPL
FT FSNTNQGPTQASQEETSQA"
FT gene complement(2166. .2463)
FT /gene="C4"
FT CDS complement(2206. .2463)
FT /codon_start=1
FT /gene="C4"
FT /product="C4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:I3QBE8"
FT /protein_id="AFI56627.1"
FT /translation="MGSHISMCLYSSKANSSAKISDSSTWYPQAGQHISIQTFRELNQV
FT PTSSPTSTRTEILSNGVSFRSMDDLLEEVNRQLMMQQQRR"
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SQ Sequence 2780 BP; 740 A; 554 C; 604 G; 881 T; 1 other;
jf919734 Length: 2780 12-DEC-2012 Type: N Check: 5444 ..
1 accggatggc cgcgcccctc cttttatgtg gtccccacca cgtgggtccc
51 acacacgtcg ctgtcaacca atcaaattgc agcctgaaac gttaattaat
101 tatccttttg tctttatata cttggtcccc aagtagtttg tcttgcaaga
151 tgtgggaccc acttctgaat gaatttccgg aatctgttca cggatttcgt
201 tgtatgcaag ccataaaata tttgcaggcc gttgagcaaa catacgagcc
251 caatactttg ggccacgatt taattaggga tcttatatct gttataaggg
301 cccgtgacta tgtcgaagcg tcccggcgat ataatcattt ccacgcccgt
351 ctcgaaggtt cgccgaaggc tgaacttcga cagcccatac agcagccgtg
401 ctgctgcccc cattgtccaa ggcacaaaca ggcgtcgaac atggacgtac
451 cggcccatgt accgaaagcc cagaatatac agaatgtatc gaagccctga
501 tgttccccgt ggatgtgaag gcccatgtaa ggtccaatcg tttgacaagc
551 gccatgattt gaagcatacg ggtgaggtat tgtgtgtttc agatgtaaca
601 cgtggtaatg gccttactca tcgtgttggg aaacgttttt gcatcaagtc
651 tatttacatt gttggcaaag tgtggatgga tgagaacatt aaggtgaaga
701 atcatactaa cacttgtatg ttctggcttg ttcgggatcg tcgtccagtt
751 accactccct atggatttgg agaattgttc aacatgtatg ataatgagcc
801 atctactgcg actattaaga atgatctgcg ggatcgttgt caggttctta
851 agaggttcac tgctagcctg agtggtggtc aatatgcgtc caaagagcaa
901 tgtgtcatta ggcgatttta taagatttat aatcatattg tgtataatca
951 tcaagagcag gggaaatatg agaatcatac tgagaacgct ctattattgt
1001 atatggcatg tactcatgct tctaatccag tgtatgctac acttaaaata
1051 agggtgtact tctatgattc aatatcgaat taataaaatt tatattttat
1101 atcatgatgt tctgttacat ctattgtctt tgcaattaca ttatacaata
1151 catgatcaac tgctctaatt acattgttaa ttgaaattac accaatatta
1201 tctaaatatc taagaacttg atatctaaat actcttaaga aatgaccagt
1251 ctgaggctgt aagttcgtcc agattcggaa gttgagaaaa catttgtgaa
1301 tccccaactc cttcctgatg ttgtgattga atcggatttg tattgaaatt
1351 atgtctttgt tcatgttgaa tggcctcttg tcgtggttgg tgatcttgaa
1401 atagagggga ttgtttatct cccagataaa aacgccattc tttgcttgat
1451 gagcagtgat gagttcccct gtgcgtgaat ccatggttga tgcagttgat
1501 gtgtatatag tatgagcagc cgcagtctag gtccacccgc ctacgcctga
1551 ctggtttctt cttggctagc ttgtgttgga ccttgattgg tatttgagaa
1601 cagcggctcg ttgagggtga cgaatgttgc attcttgaga gtccaatttt
1651 tcanagatat atttttctcc tcatctagat actctctata agaggatgta
1701 ggacctggat tgcagaggaa gattgaggga attccgcctt taatttgaat
1751 gggcttcccg tactttgtat tgctttgcca gtccctttgg gcccccataa
1801 attctttgaa gtgctttaaa tagtgcgggt ctacgtcatc aatgacgttg
1851 taccacgcat cattactgta cacttttgga ctcaggtcca gatgtccgca
1901 taaataatta tgtgggccta gggaacgggc ccatactgtc ttgccggtcc
1951 tactgtcgcc ctcgatgaca atactattcg gcctccatgg ccgcgcagcg
2001 ggatccatca cattctcgga cacccagact tcaagttcct caggaacttg
2051 attaaaagaa gaagataaaa aaggagaaat ataaggagcc ggaggctcct
2101 gaaaaatcct atctaaatta ttatttaaat tatgatattg aaaaataaaa
2151 tctttaggga gtttctccct aattatttgt agtgctgcag atgcagaacc
2201 tgtatttaac gcctctgctg ctgcatcatt agctgtctgt tgacctcctc
2251 tagcagatcg tccatcgatc tgaaactcac cccattcgag agtatctccg
2301 tccttgtcga tgtaggactt gacgtcggaa cttgatttag ctccctgaat
2351 gtttggatgg aaatgtgctg ccctgcttgg ggataccagg tcgaagaatc
2401 gctgattttg gcacttgaat ttgccttcga actgtataag cacatggaga
2451 tgtggctccc cattctcgtg aagttctctg caaactttga tatatttttt
2501 atttgttggg gtatttatgt tttttaattg ggaaagtgcc tcttcttttg
2551 ttaaggagca ttgaggatat gtaaggaaat aatttttgca atttatttga
2601 aaacgcttgg gaggagccat atggtcaatg agtaccgatt gaccaagatt
2651 tcatttatcc cttgtatatc ggtactcaat atatagtgag taccaaatgg
2701 catattggta attatgtaaa ggtacattta ttttcaaaat ttaaaattga
2751 aattcataaa gcggccatcc gtataatatt