Sequence of DPV Blueberry red ringspot virus

Blueberry red ringspot virus isolate BRRSV13 reverse transcriptase gene, complete cds.

ACC No: JF920972

Dated: 2011-10-18 | Length: 1974 | CRC: 1201019586

                
ID   JF920972; SV 1; linear; genomic DNA; STD; VRL; 1974 BP.
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AC   JF920972;
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DT   18-OCT-2011 (Rel. 110, Created)
DT   18-OCT-2011 (Rel. 110, Last updated, Version 1)
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DE   Blueberry red ringspot virus isolate BRRSV13 reverse transcriptase gene,
DE   complete cds.
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KW   .
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OS   Blueberry red ringspot virus
OC   Viruses; Retro-transcribing viruses; Caulimoviridae; Soymovirus.
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RN   [1]
RP   1-1974
RA   Kalinowska E., Paduch-Cichal E., Chodorska M., Sala-Rejczak K.;
RT   "Molecular characterization of Blueberry red ringspot virus";
RL   Unpublished.
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RN   [2]
RP   1-1974
RA   Kalinowska E., Paduch-Cichal E., Chodorska M., Sala-Rejczak K.;
RT   ;
RL   Submitted (07-MAY-2011) to the INSDC.
RL   Department of Plant Pathology, Warsaw University of Life Sciences
RL   WULS-SGGW, Nowoursynowska 166, Warsaw 02-787, Poland
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1974
FT                   /organism="Blueberry red ringspot virus"
FT                   /host="Vaccinium corymbosum cv. Darrow (highbush
FT                   blueberry)"
FT                   /isolate="BRRSV13"
FT                   /mol_type="genomic DNA"
FT                   /country="Poland"
FT                   /collection_date="2010"
FT                   /db_xref="taxon:172220"
FT   CDS             1. .1974
FT                   /codon_start=1
FT                   /product="reverse transcriptase"
FT                   /protein_id="AEQ38577.1"
FT                   /translation="MNQNNTFIKITISQKTILAYIDTGASLCLLPEYNLPKLLWKELKK
FT                   PITIRVADKRELQITKVALMITILIEKRKFLVPTIYQFDSGVPMIIGNNFLRLYYPFCQ
FT                   YLSYITLRCPKMINQKQEVIKIPIHHSSQLIKAKLLNLVTNIEEQLLMEQVNKILQERF
FT                   SLDLLGEKNKNKELIEIKLKDPNAEIFVPNNIPYTQRDIEEFKEDMEDLINKGLIRPSK
FT                   SPHSAPAFYVENHSEIKRAKRRIVINYKAMNEATIGTPKTLPRADYIMNRLKGKIWFST
FT                   LDVKSAYWQLRLTEESKPLTAFSYPPQKHYEWNVLPMGLKQAPGIFQEFMNRSLHNLEH
FT                   ICLVYVDDIIIFSEKDKNDHLSKVLQVLKRCEDEGIILSQPKAKIAHKEIDFFGLHISE
FT                   GEIILQPHILEKLVLFPDEIENRKQLQRFLGNLNYISEKGFFKDFAKYRKELQKKVSEK
FT                   VPWKWTSYDTSQVQALKALSQRLPRLYNAKESDLLIIATDASNGHWGAVMTAVTPVHIN
FT                   NYGISIEELFPKEQHTAQALSSQYQFFGTKDFVQKELLTKYASGTFTDTEKRYPIHELE
FT                   TLAVLQTFRKWKVDLLSKPFILKTDSKYVTGFLRYKIKANYNQGRLIRWQLELSQFSYR
FT                   TFYIKGSENYGPDTLTREWKEL"
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SQ   Sequence 1974 BP; 844 A; 281 C; 298 G; 551 T; 0 other;

jf920972 Length: 1974  18-OCT-2011  Type: N  Check: 4564  ..

       1  atgaatcaga acaatacttt tatcaagata acaatcagtc agaagacgat
      51  attagcatat attgatacag gtgcatcatt gtgcctatta ccagaatata
     101  atctaccaaa attactatgg aaagaattaa agaaacctat tactataaga
     151  gttgctgata aaagagaatt acagattact aaagtagccc ttatgattac
     201  aatattaata gaaaaaagga aattccttgt acctactata tatcaatttg
     251  attcaggagt acctatgatt ataggaaata actttttaag attatattac
     301  ccattttgtc aatatctatc ttatataaca ttaagatgtc ctaaaatgat
     351  caatcaaaaa caagaagtga ttaaaatacc gatacatcac agttcacaat
     401  taataaaagc aaagttacta aacctagtaa caaatattga agaacaatta
     451  ttaatggaac aagttaataa aatattacaa gaaagattct cactagattt
     501  gctaggagaa aagaataaaa ataaagaact aatagaaata aaattaaaag
     551  acccaaatgc tgaaatattt gtaccaaata atatacctta tacccaaaga
     601  gatatagaag aattcaaaga agatatggaa gatctaataa acaaaggatt
     651  aataagacca agtaaaagtc cacatagtgc gccagcgttc tatgtagaaa
     701  atcattcaga aataaaaaga gcaaaaagaa gaattgtaat aaattataaa
     751  gctatgaatg aagccaccat tggaacacct aaaacattac ccagagcaga
     801  ttatataatg aatagattaa aaggaaaaat atggttttca acattagatg
     851  taaaatcagc ctactggcaa ttaagattaa cagaagaatc taaaccacta
     901  acagcattta gttatccacc tcaaaaacat tacgaatgga atgttttacc
     951  tatgggatta aagcaagctc caggtatttt tcaagaattt atgaatagaa
    1001  gtttacataa tttagaacat atatgtttag tatatgttga tgatattatt
    1051  atattttcag aaaaggataa aaatgatcat ttatcaaaag tattacaagt
    1101  tttgaaaaga tgtgaggatg aaggaatcat cttatcacaa ccaaaggcaa
    1151  aaatagcaca taaagaaatt gatttctttg gattacatat ttcagaaggc
    1201  gaaataatac tacaaccaca tattttagaa aaactagtat tattccctga
    1251  tgaaattgag aatcgaaagc aattacaaag atttcttgga aatttaaatt
    1301  atataagtga aaaaggattt tttaaggatt ttgcaaaata tcgaaaagaa
    1351  ttacaaaaga aagtatcaga aaaagtgcca tggaaatgga cttcctatga
    1401  cactagtcaa gtgcaagcac tcaaggcttt aagccaacga ttaccaagat
    1451  tatacaatgc taaagaatca gacttgctga taatcgctac cgatgctagt
    1501  aatggccatt ggggagcagt tatgacagca gtcactccag tacatatcaa
    1551  taattatgga atatccattg aggaattatt cccaaaagag cagcatacag
    1601  cgcaagcatt atcatctcaa tatcagttct tcggaacaaa ggactttgtc
    1651  caaaaagaat tacttactaa atatgctagt ggaacattca cggataccga
    1701  aaaaagatat cctatccatg aattggaaac attagcagta ttacaaactt
    1751  ttcgaaaatg gaaagtcgat ttattatcaa aaccttttat tttaaaaaca
    1801  gattcaaaat atgttacagg atttttgaga tataaaataa aagccaatta
    1851  taatcaagga agattgatta gatggcaact tgaattatca caattcagtt
    1901  atcgaacttt ttatataaaa ggatcagaaa attatggccc tgacacccta
    1951  accagggaat ggaaggagct ataa