Sequence of DPV Tobacco curly shoot virus
Tobacco curly shoot virus isolate SILIGU-3 coat protein (AV1) gene, partial cds; replication enhancer protein (AC3) and transcription activator protein (AC2) genes, complete cds; and replication associated protein (AC1) gene, partial cds.
ACC No: JF922011
Dated: 2011-10-16 | Length: 976 | CRC: 1687417452
ID JF922011; SV 1; linear; genomic DNA; STD; VRL; 976 BP.
XX
AC JF922011;
XX
DT 16-OCT-2011 (Rel. 110, Created)
DT 16-OCT-2011 (Rel. 110, Last updated, Version 1)
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DE Tobacco curly shoot virus isolate SILIGU-3 coat protein (AV1) gene, partial
DE cds; replication enhancer protein (AC3) and transcription activator protein
DE (AC2) genes, complete cds; and replication associated protein (AC1) gene,
DE partial cds.
XX
KW .
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OS Tobacco curly shoot virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-976
RA Saha B., Saha D., Saha A.;
RT "Molecular detection of begomoviruses infecting weeds in sub-Himalayan West
RT Bengal, India";
RL Unpublished.
XX
RN [2]
RP 1-976
RA Saha B., Saha D., Saha A.;
RT ;
RL Submitted (06-MAY-2011) to the INSDC.
RL Dept. of Botany, University of North Bengal, Rajarammohanpur, Siliguri,
RL West Bengal 734013, India
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FH Key Location/Qualifiers
FH
FT source 1. .976
FT /organism="Tobacco curly shoot virus"
FT /segment="DNA-A"
FT /host="Ageratum conyzoides L."
FT /isolate="SILIGU-3"
FT /mol_type="genomic DNA"
FT /country="India:West Bengal, Siliguri"
FT /collected_by="Bikram Saha"
FT /collection_date="Jun-2009"
FT /db_xref="taxon:180526"
FT gene <1. .390
FT /gene="AV1"
FT CDS <1. .390
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="AEQ29670.1"
FT /translation="TKNQTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVH
FT RDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHSENALMLYM
FT ACTHASNPVYATLKIRIYFYDSVTN"
FT gene complement(387. .791)
FT /gene="AC3"
FT CDS complement(387. .791)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /protein_id="AEQ29671.1"
FT /translation="MDSRTGELITAAQAENGVYIWEIQNPFYFKIIEHQNRPFVMKEDI
FT ITIQIQFKYNMRKALGVHKCFLVYRIWMTSQPQTGRFLRVFKTQVFKYLNNLGIISINN
FT VIRAVDHVLWDVLEHIVYVDQSYSIKFNIY"
FT gene complement(532. .936)
FT /gene="AC2"
FT CDS complement(532. .936)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcription activator protein"
FT /protein_id="AEQ29672.1"
FT /translation="MRSSSPSKAHSTQVPIKVKHRLAKKGNRRRRVDLPCGCSYFIALA
FT CHDHGFTHRGTHHCSSSREWRVYMGDSKSLLFQDNRAPEPSICHERRHNHHPNTVQIQH
FT EESSGSAQVFSSLPNLDDFTASDWSFLKGL"
FT gene complement(839. .>976)
FT /gene="AC1"
FT CDS complement(839. .>976)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication associated protein"
FT /protein_id="AEQ29673.1"
FT /translation="EEKNTALKNWALKNAIFVTLESPLYSGSNQSEAQASQEGEQTSSC
FT "
XX
SQ Sequence 976 BP; 287 A; 175 C; 198 G; 316 T; 0 other;
jf922011 Length: 976 16-OCT-2011 Type: N Check: 592 ..
1 accaagaacc aaactaacag tgttatgttt tttttagtta gggatcgtag
51 gcctgtggat aaacctcaag attttggaga ggtttttaac atgtttgata
101 atgagcccag tacggctact gtgaagaatg ttcatcgtga taggtatcaa
151 gtgcttcgca aatggcatgc aactgttacg ggtggacaat atgcgtccaa
201 ggaacaagcc cttgtgaaga aatttgttag ggttaataat tatgttgtgt
251 ataaccagca agaagctggc aagtatgaaa atcattctga gaatgcgtta
301 atgttgtata tggcatgtac tcatgcctct aacccagtgt atgctacttt
351 gaagatacgg atctatttct atgattccgt aacaaattaa taaatattaa
401 attttattga ataagattgg tctacatata caatgtgttc taatacatcc
451 cataatacat gatcaactgc acgaattaca ttattaatac tgataattcc
501 taaattattt aaatatttaa aaacttgagt cttaaagacc cttaagaaac
551 gaccagtctg aggctgtgaa gtcatccaga ttcggtagac tagaaaacac
601 ttgtgcactc ccagagcttt cctcatgttg tatttgaact gtatttggat
651 ggtgattatg tcttctttca tgacaaatgg acggttctgg tgctctatta
701 tcttgaaata aaagggattt tgaatctccc atatatacac gccattctct
751 gcttgagctg cagtgatgag ttcccctgtg cgtgaatcca tgatcgtgac
801 atgctagtgc tatgaaatat gaacatccac aagggagatc aacacgacga
851 cgtctgttcc ccttcttggc tagcctgtgc ttcactttga ttggaacctg
901 agtagagtgg gctttcgagg gtgacgaaga tcgcattctt taaagcccaa
951 tttttaagtg ctgtattttt ctcttc