Sequence of DPV Sugarcane yellow leaf virus
Sugarcane yellow leaf virus isolate IND1, complete genome.
ACC No: JF925152
Dated: 2013-03-26 | Length: 5875 | CRC: -533305574
ID JF925152; SV 1; linear; genomic RNA; STD; VRL; 5875 BP.
XX
AC JF925152;
XX
DT 26-MAR-2013 (Rel. 116, Created)
DT 26-MAR-2013 (Rel. 116, Last updated, Version 1)
XX
DE Sugarcane yellow leaf virus isolate IND1, complete genome.
XX
KW .
XX
OS Sugarcane yellow leaf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Polerovirus.
XX
RN [1]
RP 1-5875
RA Chinnaraja C., Viswanathan R., Karuppaiah R., Bagyalakshmi K., Malathi P.,
RA Parameswari B.;
RT "Complete genome characterization of Sugarcane yellow leaf virus from
RT India: Evidence for RNA recombination";
RL Eur. J. Plant Pathol. 135(2):335-349(2013).
XX
RN [2]
RP 1-5875
RA Viswanathan R., Chinnaraja C., Karuppaiah R., Bagyalakshmi K.;
RT ;
RL Submitted (03-APR-2011) to the INSDC.
RL Pathology, Sugarcane Breeding Institute, Veerakeralam, Coimbatore,
RL Tamilnadu 641007, India
XX
FH Key Location/Qualifiers
FH
FT source 1. .5875
FT /organism="Sugarcane yellow leaf virus"
FT /host="Saccharum hybrid cultivar B38192"
FT /isolate="IND1"
FT /mol_type="genomic RNA"
FT /country="India:Coimbatore"
FT /collected_by="C. Chinnaraja"
FT /collection_date="26-May-2010"
FT /identified_by="R. Viswanathan"
FT /db_xref="taxon:94290"
FT 5'UTR 1. .66
FT CDS 67. .837
FT /codon_start=1
FT /product="RNA silencing suppresser protein"
FT /note="ORF0"
FT /protein_id="AEG20952.1"
FT /translation="MLFNEFSVQGIKFRAHASTSPVLREDVSRCLTYYRVFACRWIQLT
FT YSDEHTRHLVHNFYGPNTPVYYGLDHIRAIVATMVPILLLPDTTLGQHLHIKGQFLKSV
FT LLWLARNKLYYRVTRLFSRRFTLEQEPISAVLFRTQLLKYVGMDIFQDVARLQNILERG
FT YDPFRSVLGVLLRERERFVDRVLEQPPLDPSQTLRLCFHYHNTLDHDNSDSDMETARHN
FT RLFGLPIIRDLPDDEKALFIHSNLVGASTSASDV"
FT CDS join(266. .1738,1738. .3453)
FT /codon_start=1
FT /ribosomal_slippage
FT /product="RNA-dependent RNA polymerase"
FT /note="ORF2"
FT /protein_id="AEG20954.1"
FT /translation="MGWIIFALLLLQWCQYSSCQTQPWDSTSISKDSFSSLSFYGWPGT
FT NSTIELHGSSPGGSLSSKSPSQPYFSELNYSSMLGWIFFKMWLDCKTFSREAMILSDRS
FT LGYSFENAKGLSIEFLNNLLWILVRLYVYAFTIIIRWIMTIVILTWRPLVTIAFLVFLS
FT SATYQMMKKLYSFIQIWWVLAPLLVMFRLAMYMRRRLFSNRGDEKMVAGFKSFAVPMTP
FT PGHAVLEIVHPDDSHMGFASCVRLKNGEEALLTSVHCINETFKVRSLRNGVKIPLTEFQ
FT VLLPAKNIDLVLLRGPPEWKSILGAKAAHFTPANQLNKGAVSIFVHDGEWKMHNAKVTG
FT TDGFYATVLSNTEKGFSGAPYWNGKSIVGVHKGYVYGDDSKNYNLMAPIPPVVGLTAPA
FT FVYESPSLQGDVFSDADVSDMADYAEEVYEKALAEPKVWKPASGKYWWEMAEEEDDFVV
FT EAKPPPPESPVEKVPGEKQTPACTVEKASTPVEADSGPGKRAKWRRPLKNTGIHPAQAR
FT RIYKRVAQQHRLAVDPKDRPELHCNEGGGETAAKSTEQTAAERREEVAAKTQDLEHFFQ
FT AAYKWEESTSDIPGSGSAANSQRYTIPQNRKAHNGGSSIISEHPEMASKVAGFGWPLFG
FT AQAEETSLRLQAARWFKRAELAEKPTATQRRLVLIVWLRHINRVKPMPHTPAPLVASCG
FT TISSRILKRLSTTLELDAGIGLPYKLLNKDVHRQMVEDPKFLPLLTRLTWNRLQKMSQV
FT DFREMTPEQLVREGLCDPIRLFVKGEPHKQAKLDEGRYRLIMSVSLVDQLVARVLFQAQ
FT NKREIALWRAIPSKPGFGLSTDREAREFIESLSKTVGCSPAEVIRGWRDKIVPTDCSGF
FT DWSVADWMLEDDMEVRNLLTINNNELTRRLRACWLKCITNSVICTSGGVLYAQTHPGVQ
FT KSGSYNTSSSNSRVRVMAAFHCGADWAIAMGDDALESPNSNINAYQKLGFKVEVASQLE
FT FCSHVFEQEDLARPLNVNKMLYRLIFGYNPACGNAEVLCNYLQAVASVLNELRHDPQLV
FT ATLHQWLVPGATTK"
FT CDS 266. .2194
FT /codon_start=1
FT /product="multifunctional protein"
FT /note="ORF1"
FT /protein_id="AEG20953.1"
FT /translation="MGWIIFALLLLQWCQYSSCQTQPWDSTSISKDSFSSLSFYGWPGT
FT NSTIELHGSSPGGSLSSKSPSQPYFSELNYSSMLGWIFFKMWLDCKTFSREAMILSDRS
FT LGYSFENAKGLSIEFLNNLLWILVRLYVYAFTIIIRWIMTIVILTWRPLVTIAFLVFLS
FT SATYQMMKKLYSFIQIWWVLAPLLVMFRLAMYMRRRLFSNRGDEKMVAGFKSFAVPMTP
FT PGHAVLEIVHPDDSHMGFASCVRLKNGEEALLTSVHCINETFKVRSLRNGVKIPLTEFQ
FT VLLPAKNIDLVLLRGPPEWKSILGAKAAHFTPANQLNKGAVSIFVHDGEWKMHNAKVTG
FT TDGFYATVLSNTEKGFSGAPYWNGKSIVGVHKGYVYGDDSKNYNLMAPIPPVVGLTAPA
FT FVYESPSLQGDVFSDADVSDMADYAEEVYEKALAEPKVWKPASGKYWWEMAEEEDDFVV
FT EAKPPPPESPVEKVPGEKQTPACTVEKASTPVEQTPVQGNEPSGADHLKTPESTPLKPD
FT ESTKELLNNIVSQLIQKIDLSSIATRVEEKLLQKAQNKQQQNGGKKSPRKRKTSNTSSK
FT PPTNGKSPPVISPVQEVRQTPSAIPSPKTEKHTMGGAASSQNTQRWRPKSPDSGGLSSA
FT LKPKRQV"
FT CDS 3645. .5672
FT /codon_start=1
FT /transl_except=(pos:4233. .4235,aa:OTHER)
FT /product="putative aphid transmission factor"
FT /note="ORF5; translational readthrough"
FT /protein_id="AEG20957.1"
FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRPAAGPRRVRRRRARVG
FT GNAVRGPGGRSNRDVLTFTIDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL
FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKTFPAPFIRGKDFMTT
FT SADQFWLLYKGNGDGSLAGQFVCRFECLFQNPKXVGDAPPTPTPQPTPPAPAPAPAPKY
FT FGYQGVPNNIIRTRGNSEYLDVGQLDSVTMYLWQDESWSIEQLPAGFRVNTQDRAIPYL
FT LIPVEKGKYSVFIQCEGFKAVKAEGGTNNGKMSGFICDNTNLQGWRAYAYSGCSISKYK
FT TADSIVPGHPDMRVNNCSFTDQLVERDFSCSFHLEVPQKGYFGLEAPPIEKSDHFNFVV
FT SSANFTEKTMEWGSVSIAIDEVSDGAYSGSKWDKTTAMSARLRDLVSAPSEVYTPVALV
FT SSADEGTESTPPAPNPALGPDNPATKEPAPKIVDSPDPKVLNWLNNQKDEPVVNEVLRE
FT SPIYAPPPPPSLGHTHVDTQRQADKVRRSLMANASRSASPPPVSTEVPVLGSADTASQG
FT STLRGGSLRGNLNSRPFLPRVADSPPRSVSPARSETSTLQAGSLSGGSLRGGSLQVLPE
FT ATREQRRQYESLKNSQGKTVARNYAREQGFKPPKSASFFG"
FT CDS 3645. .4235
FT /codon_start=1
FT /product="coat protein"
FT /note="ORF3"
FT /protein_id="AEG20955.1"
FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRPAAGPRRVRRRRARVG
FT GNAVRGPGGRSNRDVLTFTIDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL
FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKTFPAPFIRGKDFMTT
FT SADQFWLLYKGNGDGSLAGQFVCRFECLFQNPK"
FT CDS 3676. .4128
FT /codon_start=1
FT /product="movement protein"
FT /note="ORF4"
FT /protein_id="AEG20956.1"
FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE
FT ATGMFSLSRLTISRPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT
FT QLQVQSHLKWIHPAPKQQQAPRLQASPSRGTPRKPSRPPSSGGKTS"
FT 3'UTR 5673. .5875
XX
SQ Sequence 5875 BP; 1558 A; 1542 C; 1445 G; 1330 T; 0 other;
jf925152 Length: 5875 26-MAR-2013 Type: N Check: 9867 ..
1 acaaaatata tcgggaggga aacccctgat atatttagaa ctcagcctct
51 ggttgtaaac tgctctatgc ttttcaacga attcagcgtt caaggcatca
101 agtttagagc acacgcaagt acttcgccag ttttgcgtga ggacgtgagc
151 aggtgcttga cctattacag ggtcttcgct tgcaggtgga tacaactcac
201 ctactcagac gagcacactc gccacctggt ccataacttc tatggcccca
251 acacgcctgt ttactatggg ttggatcata ttcgcgctat tgttgctaca
301 atggtgccaa tactcctcct gccagacaca accctgggac agcacctcca
351 tatcaaagga cagtttctca agtctgtcct tctatggttg gcccggaaca
401 aactctacta tagagttaca cggctcttct cccggcggtt cactctcgag
451 caagagccca tctcagccgt acttttccga actcaactac tcaagtatgt
501 tgggatggat atttttcaag atgtggctag attgcaaaac attctcgaga
551 gaggctatga tcctttccga tcggtccttg gggtactcct tcgagaacgc
601 gaaaggtttg tcgatcgagt tcttgaacaa cctcctctgg atcctagtca
651 gactctacgt ttatgctttc actatcataa tacgttggat catgacaata
701 gtgattctga catggagacc gctcgtcaca atcgcctttt tggtcttcct
751 atcatccgcg acttaccaga tgatgaaaaa gctttattca ttcattcaaa
801 tctggtgggt gctagcacct ctgctagtga tgtttaggtt ggccatgtac
851 atgaggcgga ggttgttctc gaatcgtggg gacgagaaaa tggttgcagg
901 tttcaaaagc tttgcagtcc ccatgactcc accgggacac gctgtacttg
951 aaatagtaca cccagacgac tcccacatgg gatttgcatc ctgtgtacga
1001 ttgaaaaacg gggaagaggc tctcttgaca tctgttcact gcattaacga
1051 aacctttaag gttcgttccc tcaggaatgg agtcaaaata cctctaacgg
1101 aatttcaggt acttttaccc gccaagaata tcgacttagt tcttcttcga
1151 ggcccacctg agtggaagtc tattcttgga gccaaagcag cccatttcac
1201 tccagcaaac cagctcaaca aaggagctgt gtccatcttc gttcacgatg
1251 gtgagtggaa aatgcacaat gcaaaggtta cgggcactga tggtttttac
1301 gccacggtgt tgagtaacac agagaagggc ttcagtggcg ccccctactg
1351 gaacggcaaa agcatagtag gggttcacaa agggtacgtg tatggggatg
1401 attcaaagaa ctacaatctc atggcgccaa tcccccctgt tgtggggttg
1451 acggcgccag catttgttta tgaatccccc tctctgcaag gagatgtctt
1501 tagcgatgcc gacgtttcag acatggctga ttacgctgaa gaagtgtatg
1551 aaaaagccct tgcagagccc aaagtgtgga aacccgccag cggcaaatac
1601 tggtgggaaa tggccgaaga agaggatgat ttcgtggttg aagcgaaacc
1651 tcctccccct gaatcccccg ttgagaaagt tccaggagag aagcagactc
1701 cagcttgtac tgttgagaaa gcttcgactc ctgtcgagca gactccggtc
1751 cagggaaacg agccaagtgg cgccgaccac ttaaaaacac cggaatccac
1801 cccgctcaag ccagacgaat ctacaaaaga gttgctcaac aacatcgtct
1851 cgcagttgat ccaaaagatc gacctgagct ccattgcaac gagggtggag
1901 gagaaactgc tgcaaaaagc acagaacaaa cagcagcaga acggagggaa
1951 gaagtcgccg cgaaaacgca agacctcgaa cacttcttcc aagccgccta
2001 caaatgggaa gagtccacca gtgatatccc cggttcagga agtgcggcaa
2051 actcccagcg ctataccatc ccccaaaacc gaaaagcaca caatgggggg
2101 agcagcatca tctcagaaca cccagagatg gcgtccaaag tcgccggatt
2151 cgggtggcct ctcttcggcg ctcaagccga agagacaagt ctgaggctcc
2201 aagcggcccg ctggttcaaa cgagccgagc tagcggaaaa gccgactgca
2251 acacaacgca ggctcgtctt gatcgtgtgg ttaaggcata taaaccgtgt
2301 aaaaccaatg ccccacacac cagctcctct ggtagcctcc tgtggaacga
2351 tttcctcaag gattttaaag aggctatcaa ctacactaga acttgacgca
2401 ggaataggtc tcccatacaa actcctcaac aaggacgttc atcgtcaaat
2451 ggttgaagac cccaaattcc tgccactcct gacgcgattg acctggaacc
2501 gtttacagaa gatgtcccag gttgatttcc gggagatgac tcctgaacag
2551 ctagtgagag aaggattgtg cgacccgatc cgtttgttcg tcaaagggga
2601 accgcacaag caggccaagc ttgatgaagg gcgctaccgc ctcatcatgt
2651 cagtctcgct ggtagatcaa ctggtagccc gggttttgtt ccaagcgcaa
2701 aacaagagag agatagcttt gtggagagct atcccgtcaa agcccggttt
2751 tggcttatcc acagacaggg aagcacgcga attcatagaa tccctgtcca
2801 agacagtagg gtgttcccca gctgaagtca ttcgtggctg gcgggacaag
2851 atcgtaccca ccgactgttc cggcttcgac tggtcagtcg ccgactggat
2901 gctcgaggac gacatggaag tgagaaacct tctcactatc aacaacaacg
2951 agctcacccg gcgccttcgg gcatgctggc tgaagtgcat cactaactca
3001 gtgatttgca cgtccggcgg tgtcttgtac gcccaaactc accctggtgt
3051 gcagaaatct ggatcttaca acacgagttc atccaattcc agggttcgag
3101 tgatggccgc ttttcattgc ggtgctgatt gggcgatagc catgggggat
3151 gacgcacttg aatccccaaa ctccaacatc aacgcgtatc aaaagttggg
3201 gttcaaagtc gaggttgctt cacagctaga attttgctca cacgtctttg
3251 agcaggaaga cctcgccagg ccgttgaacg taaacaagat gctttatcgt
3301 ttgatatttg gatacaatcc ggcctgtggc aacgcggagg tattgtgcaa
3351 ttacctccaa gctgtggctt cagttctcaa cgagttacgc cacgatccgc
3401 agctagttgc caccctccac cagtggttgg ttcctggcgc caccacaaaa
3451 taaatacgga gggtcatccc gagccaccat ttaggttgcg agagtggaac
3501 gggcagtcct aacaagccgc gagattctgg atttcaagct actagctggg
3551 gtccttattg gcattttcat tgcgatcccc ctagtgattt tagcggctta
3601 cctgatattc ctcaaaatca gtgcacatat ccgagcgatt gttaatgaat
3651 acgggcgcta accgctcacg aaggaatgtc agaagacgcg ctaaccgtcg
3701 tcgacagact cggccagtgg tcgtggtccg gcctgccgca ggacctagac
3751 gagtacgacg acgtagagca cgtgttggag gaaacgctgt gcgaggaccg
3801 ggaggaagaa gcaacaggga tgttctcact ttcacgattg acgatctcaa
3851 ggccaactca accgggatcc tcaaattcgg accgaactta tctcagtacg
3901 cagcgttcaa caatggctta ctcaaagcct accatgagta taaaatcaca
3951 agtctcacta ttcagtataa ctcatgctcc tccgacgcaa ctccaggtgc
4001 aatcgcactt gaagtggata catcctgctc ccaaacaaca acaggctcca
4051 agattacaag cttccccgtc aagaggaacg ccaagaaaac cttcccggcc
4101 cccttcatca gggggaaaga cttcatgact acatcagctg atcagttttg
4151 gcttttgtac aaagggaatg gagacggaag cctagcagga caattcgtct
4201 gccgatttga atgtttattc cagaatccca aataggtagg cgacgctccc
4251 cccacaccca caccacaacc aaccccacct gctccggccc cggcaccagc
4301 acctaaatat tttggatatc aaggtgtgcc gaacaacatc atcagaactc
4351 gaggaaactc agagtatctc gatgtgggcc aactcgatag cgtgaccatg
4401 tacctctggc aagatgaatc atggagcatc gagcaactgc cagccggatt
4451 tcgagtcaac actcaagatc gtgccatacc ttatctcctc attcctgtgg
4501 agaaaggaaa atactccgtg ttcatacaat gtgagggctt taaggcagtg
4551 aaagccgaag gaggcacgaa taacggcaaa atgagcgggt ttatctgtga
4601 caatacaaat ctccagggtt ggagagcgta tgcatatagt gggtgttcaa
4651 tctctaaata caagacagct gactcgattg tgcctggcca tccagacatg
4701 agagtgaaca actgttcttt taccgatcag ttggtcgaga gagatttttc
4751 ttgttcattt cacctcgagg tgcctcagaa aggctatttt ggtctagagg
4801 ccccacccat tgaaaagagt gatcatttca acttcgtggt gtctagcgct
4851 aatttcactg agaaaacaat ggaatgggga tcagtctcca tagcgataga
4901 cgaggtgagt gacggagcgt atagtggatc aaaatgggat aagaccactg
4951 caatgagtgc tcgtttgcga gacctagtga gcgccccatc ggaagtttac
5001 actccggtgg cactagtatc ttcagcagac gaagggacgg agagtacgcc
5051 tccagccccg aacccggcac tgggaccgga caacccagca accaaagagc
5101 ccgcgcccaa aatcgtggac tcgccggatc caaaggttct caattggctt
5151 aacaaccaaa aagatgaacc ggtggttaat gaggttttgc gagaatctcc
5201 gatttacgcg cctccaccac ctccgtctct aggtcacact catgttgata
5251 cacagagaca ggcggataag gtccggcgct ctctaatggc taacgcttca
5301 cgttcagcct cacctcctcc tgtatccacc gaggtgcccg tgcttggatc
5351 cgccgacacc gcctctcaag gcagtactct tcgtggcggg tctctcagag
5401 gtaatttgaa ctctcgcccc ttcttaccga gggtcgctga cagtcctccc
5451 cgatctgtaa gtccggctcg ttctgagacc agcacattac aggccggttc
5501 tctgagtggt ggttcgttga gaggtggcag cctccaggtt ttacctgagg
5551 ccacgagaga gcagaggagg cagtacgaat ctttgaaaaa ttcacaaggg
5601 aagacagtgg cgaggaacta tgccagagag caaggtttca agccaccgaa
5651 atccgcctcc ttctttggtt gagtgttgga acactataaa ctccccctcc
5701 tcgggacaca gggctccgca catgagctta aaccgcgttc gatccacgaa
5751 cagaaactgg agaactccgc aaagttctaa aactatgcag atgggttagc
5801 gacccagctc ctccattgat gtttagcatc tttggaggcc caagctaaga
5851 gggatggaat acagggaggc actgc