Sequence of DPV Sugarcane yellow leaf virus
Sugarcane yellow leaf virus isolate IND2, complete genome.
ACC No: JF925153
Dated: 2013-03-26 | Length: 5875 | CRC: 1255429799
ID JF925153; SV 1; linear; genomic RNA; STD; VRL; 5875 BP.
XX
AC JF925153;
XX
DT 26-MAR-2013 (Rel. 116, Created)
DT 26-MAR-2013 (Rel. 116, Last updated, Version 1)
XX
DE Sugarcane yellow leaf virus isolate IND2, complete genome.
XX
KW .
XX
OS Sugarcane yellow leaf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Polerovirus.
XX
RN [1]
RP 1-5875
RA Chinnaraja C., Viswanathan R., Karuppaiah R., Bagyalakshmi K., Malathi P.,
RA Parameswari B.;
RT "Complete genome characterization of Sugarcane yellow leaf virus from
RT India: Evidence for RNA recombination";
RL Eur. J. Plant Pathol. 135(2):335-349(2013).
XX
RN [2]
RP 1-5875
RA Viswanathan R., Chinnaraja C., Karuppaiah R., Bagyalakshmi K.;
RT ;
RL Submitted (03-APR-2011) to the INSDC.
RL Pathology, Sugarcane Breeding Institute, Veerakeralam, Coimbatore,
RL Tamilnadu 641007, India
XX
FH Key Location/Qualifiers
FH
FT source 1. .5875
FT /organism="Sugarcane yellow leaf virus"
FT /host="Saccharum hybrid cultivar Co 86032"
FT /isolate="IND2"
FT /mol_type="genomic RNA"
FT /country="India:Coimbatore"
FT /collected_by="C. Chinnaraja"
FT /collection_date="26-May-2010"
FT /identified_by="R. Viswanathan"
FT /db_xref="taxon:94290"
FT 5'UTR 1. .66
FT CDS 67. .837
FT /codon_start=1
FT /product="RNA silencing suppresser protein"
FT /note="ORF0"
FT /protein_id="AEG20958.1"
FT /translation="MLFNEFSVQGIKFRAHASTSPVLREDVSRCLTYYRVFACRWIELT
FT YSDEHTRHLVHNFYGPNTPVYYGLDHIRAVVATMVPILLLPDTTLGQHLHIKRQFLKSV
FT LLWLAQNKLYYRVTRCFSRRFTLEQEPISAELFRTQLLKYVGMDIFQDVARLQNILERG
FT YDPFRSVLGVLLRERERFVDRVLEQPPLDPSQTLRLCFHYHDTLDHDDSDSDMETARHN
FT RLFGLPIIRNLPDDEKALFIHSNLVGASTFASDV"
FT CDS join(266. .1738,1738. .3453)
FT /codon_start=1
FT /ribosomal_slippage
FT /product="RNA-dependent RNA polymerase"
FT /note="ORF2"
FT /protein_id="AEG20960.1"
FT /translation="MGWIIFALLLLQWCRYSSCQTQPWDSTSISKGSFSSLSFYGWPKI
FT NSTIELHGASPGGSLSSKSPSQPNFSELNYSSMLGWIFFKMWLDCKTFSREAMILSDRF
FT LGYSFENAKGLSIEFLNNLLWILVRLYVCAFTIMIRWIMTIAILTWRPLVTIAFLVFLS
FT SATYQMMKKLYSFTQIWWVLAPLLVMFRLAMYLRRRLFSNRGDEKMVAGFKSFAVPMTP
FT PGHAVLEIVHPDNSHMGYASCVRLKNGEKALLTSVHCINETFKVRSLRNGVKIPLTEFQ
FT VLLPAKNIDLVLLRGPPEWKSILGAKAAHFTPANQLNKGAVSIFVHDGEWKMHNAKVTG
FT TDGFYATVLSNTEKGFSGAPYWNGKSIVGVHKGYVYGDDSKNYNLMAPIPPVVGLTAPA
FT FVYESPSLQGDVFSDADVSDMADYAEEVYEKALAEPKVWKPASGKYWWEMAEEEDDFVV
FT EAKPPPPESPVEKAPGEKQTPACTVEKASTPVEADSGPGKRAEWRRPLKNTGIHPAQAR
FT RIYKKVAQQHRLAIDPKDRPEFHCNEGGGETAAKSTEQTAAERGEEVAAKTQDLEHFFQ
FT AAYKWEESTSDIPGSGSAANSQRYTIPQNRKAHNGESTSSQNTQRWTSKVAGFGWPLFG
FT AQAEETSLRLQAARWLKRAELAEKPTATQRRLVLIVWLRHMNRVKPMPHTPAPLVASCG
FT TVSSRILKRLSTTLELDAGIGLPYKLLNKDVHRQMVEDPKFLPLLTRLTWNRLQKMSQV
FT DFREMTPEQLVREGLCDPIRLFVKGEPHKQAKLDEGRYRLIMSVSLVDQLVARVLFQAQ
FT NKKEIALWRAIPSKPGFGLSTDREAREFIESLSKTVGCSPAEVIRGWRDKIVPTDCSGF
FT DWSVADWMLEDDMEVRNLLTINNNELTRRLRACWLKCITNSVICTSGGVLYAQTHPGVQ
FT KSGSYNTSSSNSRVRVMAAFHCGADWAIAMGDDALESPNSNINAYQKLGFKVEVASQLE
FT FCSHVFEQEDLARPLNINKMLYRLIFGYNPACGNAEVLCNYLQAVASVLNELRHDPQLV
FT ATLHQWLVPGATTK"
FT CDS 266. .2194
FT /codon_start=1
FT /product="multifunctional protein"
FT /note="ORF1"
FT /protein_id="AEG20959.1"
FT /translation="MGWIIFALLLLQWCRYSSCQTQPWDSTSISKGSFSSLSFYGWPKI
FT NSTIELHGASPGGSLSSKSPSQPNFSELNYSSMLGWIFFKMWLDCKTFSREAMILSDRF
FT LGYSFENAKGLSIEFLNNLLWILVRLYVCAFTIMIRWIMTIAILTWRPLVTIAFLVFLS
FT SATYQMMKKLYSFTQIWWVLAPLLVMFRLAMYLRRRLFSNRGDEKMVAGFKSFAVPMTP
FT PGHAVLEIVHPDNSHMGYASCVRLKNGEKALLTSVHCINETFKVRSLRNGVKIPLTEFQ
FT VLLPAKNIDLVLLRGPPEWKSILGAKAAHFTPANQLNKGAVSIFVHDGEWKMHNAKVTG
FT TDGFYATVLSNTEKGFSGAPYWNGKSIVGVHKGYVYGDDSKNYNLMAPIPPVVGLTAPA
FT FVYESPSLQGDVFSDADVSDMADYAEEVYEKALAEPKVWKPASGKYWWEMAEEEDDFVV
FT EAKPPPPESPVEKAPGEKQTPACTVEKASTPVEQTPVQGNEPSGADHLKTPESTPLKPD
FT ESTKKLLNNIVSQLIQKIDLNSIATRVEEKLLQKAQNKQQQNGGKKSPRKRKTSNTFSK
FT PPTNGKSPPATSPVQEVRQTPSAIPSPKTEKHTMGRAHHLRTPRDGRPKSPDSGGLSSA
FT PKPKRQV"
FT CDS 3645. .5672
FT /codon_start=1
FT /transl_except=(pos:4233. .4235,aa:OTHER)
FT /product="putative aphid transmission factor"
FT /note="ORF5; translational readthrough"
FT /protein_id="AEG20963.1"
FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRPAAGPRRVRRRRARVG
FT GNAVRGPGGRSNRDVLIFTIDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL
FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKTFPAPFIRGKDFMTT
FT SADQFWLLYKGNGDGSLAGQFVCRFECLFQNPKXVGDAPPTPTPQPTPPAPAPAPAPKY
FT FGYQGVPNNIVKTRGNSEYLDVGQLDSVTMYLWKDESWSIEQLPAGYRVNTQDRAIPYL
FT LIPVEKGKYSVFIQCEGFKAVKAKGGTNNGKMSGFICDNINLQGWRAYAYSGCSISNYK
FT TADSNVPGHPDMRVNNCSFTDQLVERDFSCSFHLEVPQKGYFGLEAPPIERSDHFNFVV
FT SYANFTEKTMEWGSVSIAIDEVSDGAYSGSKWDKTTAMSARLRDLVSAPSEIYTPVALV
FT SSADEGTESMPPAPNPALGPDNPATKEPAPKIVDSPDPKVLNWLNNQKDEPVVNEVLRE
FT SPIYAPPPPPSLGHTHVDTQRQADKVRRSLMANASRSASPPPVATEVPVSGSADTVSQG
FT STLCGGSLRGNLNSRPSLPRVADSPPRSVSPARSETSTLQVGSLSGGSLRGGSLQVLPE
FT ATREQRRQYESLKNSQGKTVAKNYAKEQGFKPPKSASFFG"
FT CDS 3645. .4235
FT /codon_start=1
FT /product="coat protein"
FT /note="ORF3"
FT /protein_id="AEG20961.1"
FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRPAAGPRRVRRRRARVG
FT GNAVRGPGGRSNRDVLIFTIDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL
FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKTFPAPFIRGKDFMTT
FT SADQFWLLYKGNGDGSLAGQFVCRFECLFQNPK"
FT CDS 3676. .4128
FT /codon_start=1
FT /product="movement protein"
FT /note="ORF4"
FT /protein_id="AEG20962.1"
FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE
FT ATGMFSFSRLTISRPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSQFSITHAPPT
FT QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKPSRPPSSGGKTS"
XX
SQ Sequence 5875 BP; 1572 A; 1532 C; 1439 G; 1329 T; 3 other;
jf925153 Length: 5875 26-MAR-2013 Type: N Check: 8858 ..
1 acaaaatata tggggaggga aacccctgat atatttagaa ctcagcttct
51 ggttgtaaac tgctytatgc ttttcaacga attcagcgtt caaggcatca
101 agtttagagc acacgcaagc acttcgccag ttttgcgtga ggacgtgagc
151 aggtgtttga cctactacag ggtyttcgct tgcaggtgga ttgaactcac
201 ttattcagac gagcacaccc gccacctggt ccataatttc tatggcccta
251 acacgcctgt ttactatggg ttggatcata ttcgcgctgt tgttgctaca
301 atggtgccga tactcctcct gccagacaca accctgggac agcacctcca
351 tatcaaaagg cagtttctca agtctgtcct tctatggttg gcccaaaata
401 aactctacta tagagttaca cggtgcttct cccggcggtt cactctcgag
451 caagagccca tctcagccga acttttccga actcaactac tcaagtatgt
501 tgggatggat atttttcaag atgtggctag attgcaaaac attctcgaga
551 gaggctatga tcctttccga tcggttcttg gggtactcct tcgagaacgc
601 gaaaggtttg tcgatcgagt tcttgaacaa cctcctctgg atcctagtca
651 gactctacgt ttgtgctttc actatcatga tacgttggat catgacgata
701 gcgattctga catggagacc gctcgtcaca atcgcctttt tggtcttcct
751 atcatccgca acctaccaga tgatgaaaaa gctttattca ttcactcaaa
801 tctggtgggt gctagcacct ttgctagtga tgtttaggtt ggccatgtat
851 ttaaggcgga ggttgttctc gaatcgtggg gacgaraaaa tggttgcagg
901 tttcaaaagc tttgcagtcc ccatgacccc accgggacac gctgtacttg
951 aaatagtaca cccagacaac tcccacatgg gatatgcatc ctgtgtacga
1001 ttgaaaaacg gggaaaaggc tctcttgaca tctgttcact gcattaacga
1051 aacctttaag gttcgttccc tcaggaatgg agtcaaaata cctctaacgg
1101 aatttcaggt acttttaccc gccaagaata ttgacttagt tcttcttcga
1151 ggcccacctg agtggaagtc tattcttgga gccaaagcag cccatttcac
1201 tccagcaaac cagctcaaca aaggagctgt gtccatcttc gttcacgatg
1251 gtgagtggaa aatgcacaat gcaaaggtta cgggcactga tggtttttac
1301 gccacagtgt tgagtaacac agagaagggc ttcagtggcg ccccctactg
1351 gaacggcaaa agcatagtag gggttcacaa agggtacgtg tatggggatg
1401 attcaaagaa ctacaatctc atggcgccaa tcccccctgt tgtggggttg
1451 acggcgccag catttgttta tgaatccccc tctctgcaag gagatgtctt
1501 tagcgatgcc gacgtttcag acatggctga ttacgctgaa gaagtgtatg
1551 aaaaagccct tgcagagccc aaagtgtgga aacccgccag cggcaaatac
1601 tggtgggaaa tggccgaaga agaggatgat ttcgtggttg aagcgaaacc
1651 tcctccccct gaatcccccg ttgagaaagc tccaggagag aagcagactc
1701 cagcatgtac tgttgagaaa gcttcgactc ctgtcgagca gactccggtc
1751 cagggaaacg agccgagtgg cgccgaccac ttaaaaacac cggaatccac
1801 cccgctcaag ccagacgaat ctacaaaaaa gttgctcaac aacatcgtct
1851 cgcaattgat ccaaaagatc gacctgaatt ccattgcaac gagggtggag
1901 gagaaactgc tgcaaaaagc acagaacaaa cagcagcaga acggggggaa
1951 gaagtcgccg cgaaaacgca agacctcgaa cactttttcc aagccgccta
2001 caaatgggaa gagtccacca gcgacatccc cggttcagga agtgcggcaa
2051 actcccagcg ctataccatc ccccaaaacc gaaaagcaca caatggggag
2101 agcacatcat ctcagaacac ccagagatgg acgtccaaag tcgccggatt
2151 cgggtggcct ctcttcggcg cccaagccga agagacaagt ctgaggctcc
2201 aagcggcccg ctggctcaaa cgagccgagc tagcggaaaa gccgactgca
2251 acacaacgca ggctcgtctt gatcgtgtgg ttaaggcata tgaaccgtgt
2301 aaaaccaatg ccccacacac cagctcctct ggtagcctcc tgtggaacgg
2351 tttcctcaag gattttaaag aggctatcaa ctacactaga actcgacgct
2401 ggaataggtc tcccatacaa actcctcaac aaggatgttc atcgtcaaat
2451 ggttgaagac cccaaattcc tgccgctcct gacgcgattg acctggaacc
2501 gtttacagaa gatgtcccag gttgatttcc gggagatgac tccagaacaa
2551 ctagtgagag aaggattgtg cgacccgatt cgtttgttcg tcaaagggga
2601 accgcacaag caggccaagc ttgatgaagg gcgctaccgc ctcatcatgt
2651 cagtctcgct ggtagatcaa ctggtagccc gggttttgtt ccaagcgcaa
2701 aacaagaaag agatagcttt gtggagagct atcccgtcaa agcccggttt
2751 tggcttatcc acagacaggg aagcacgcga attcatagaa tccctgtcca
2801 agacagtagg gtgttcccca gctgaagtca ttcgtggctg gcgggacaag
2851 atcgtaccca ccgactgttc cggtttcgac tggtcagtcg ccgactggat
2901 gctcgaggac gacatggaag tgagaaacct tctcactatc aacaacaacg
2951 agctcacccg gcgccttcgg gcatgctggc tgaagtgcat cactaactca
3001 gtgatttgca cgtccggcgg tgtcttgtac gcccaaactc accctggtgt
3051 gcagaaatct ggatcttaca acacgagttc atccaattcc agggtccgag
3101 tgatggccgc ttttcattgc ggtgctgatt gggcgatagc catgggggat
3151 gacgcacttg aatccccaaa ctccaacatc aacgcgtatc aaaagttggg
3201 gttcaaagtc gaggttgctt cacagctaga attttgctca cacgtctttg
3251 agcaggaaga cctcgccagg ccgttgaaca taaacaagat gctttatcgt
3301 ttgatatttg gatacaatcc ggcctgtggc aacgcggagg tattgtgcaa
3351 ttacctccaa gctgtggctt cagttctcaa cgagttacgc cacgatccgc
3401 agctagttgc caccctccac cagtggttgg ttcctggcgc caccacaaaa
3451 taaatacgga gggtcatccc gagccaccat ttaggttgcg agagtggaac
3501 gggcagtcct aacaagccgc gagattctgg attacaagct actagctggg
3551 gtccttattg gcattctcat tgcgatcccc ctagtgattt tagcggctta
3601 cctgatattc ctcaaaatca gtgcacatat ccgagcgatt gttaatgaat
3651 acgggcgcta accgctcacg aaggaatgtc agaagacgcg ctaaccgtcg
3701 tcgacagact cggccagtgg tcgtggtccg gcctgccgca ggacctagac
3751 gagtacgacg acgtagagca cgtgttggag gaaacgctgt gcgaggaccg
3801 ggaggaagaa gcaacaggga tgttctcatt ttcacgattg acgatctcaa
3851 ggccaactca accgggatcc tcaaattcgg accgaaccta tctcagtacg
3901 cagcgttcaa caatggctta ctcaaagcct accatgagta taaaatcaca
3951 agtctcacaa ttcagtataa ctcatgctcc tccgacgcaa ctccaggtgc
4001 aatcgcactt gaagtggata catcctgctc ccaaacaaca acaggctcca
4051 agattactag cttccccgtc aagaggaacg ccaagaaaac cttcccggcc
4101 cccttcatca gggggaaaga cttcatgact acatcagctg atcagttttg
4151 gcttttgtac aaagggaatg gagacggaag cctagcagga caattcgtct
4201 gccgatttga atgtttattc cagaatccca aataggtagg cgacgctccc
4251 cccacaccca caccacaacc aaccccaccc gctccggccc cggcaccagc
4301 acctaaatat tttggatatc aaggtgtgcc gaacaacatc gtcaaaactc
4351 gaggcaactc agagtatctc gatgtgggcc aactcgatag cgtgaccatg
4401 tacctctgga aagatgaatc atggagcatc gagcaactgc cagccggata
4451 tcgagtcaac actcaagatc gtgccatacc ttatctcctc attcctgtgg
4501 agaaaggaaa atactccgtg ttcatacaat gtgagggctt taaggcagtg
4551 aaagccaaag gaggcacgaa taacggcaaa atgagcgggt ttatttgtga
4601 taacataaat ctccagggtt ggagagcgta tgcatatagt gggtgttcaa
4651 tctctaatta caagacagct gactcgaacg tgcctggtca tccagacatg
4701 agagtgaaca actgttcttt taccgaccag ctggtcgaga gagatttttc
4751 ttgttcattt cacctcgagg tgcctcagaa aggctatttt ggtctagagg
4801 ccccacccat tgaaaggagt gatcatttca acttcgtggt gtcttacgct
4851 aatttcactg agaaaacaat ggaatgggga tcagtctcca tagcgataga
4901 cgaggtgagt gacggagcgt atagtggatc aaaatgggat aagaccactg
4951 caatgagtgc tcgtttgcga gacctagtga gcgccccatc ggaaatttac
5001 actccggtgg cactagtatc ttcagcagac gaagggacgg agagtatgcc
5051 tccagccccg aacccggcac tgggaccgga caacccagca accaaagagc
5101 ccgcgcccaa aatcgtggac tcgccggatc caaaggttct caattggctt
5151 aacaaccaaa aagatgaacc ggtggttaat gaggttttgc gagaatctcc
5201 gatttacgcg cctccaccac ctccgtctct aggtcacact catgttgata
5251 cacagagaca ggcggataag gtccggcgct ctctaatggc taacgcttca
5301 cgttcagcct cacctcctcc tgtagccacc gaggtgcccg tgtctggatc
5351 cgccgatacc gtctctcaag gcagtactct ttgcggcggg tctctcagag
5401 gtaatttgaa ctctcgcccc tccttgccga gggtcgctga cagtcctccc
5451 cgatctgtaa gtccggctcg ttctgagacc agtacattac aggttggttc
5501 tctgagtggt ggttcgttga gaggtggcag cctccaggtt ttacctgagg
5551 ccacgagaga gcagaggagg caatacgaat ctttgaaaaa ttcacaaggg
5601 aagacagtgg cgaagaacta tgccaaagag caaggtttca agccaccgaa
5651 atccgcctcc ttctttggtt gagtgttgga acactataaa ctccccctcc
5701 tcgggacaca gggctccgca catgagcata aaccgcgttc gatccacgaa
5751 cagaaactgg agaactccgc aaagttctaa aactatgcag atgggttagc
5801 gacccagctc ctccattgat gttaagcatc ttaggaggcc caagctaaga
5851 gggatggaat acagggaggc actgc