Sequence of DPV Fig badnavirus 1

Fig badnavirus 1 isolate CA 32 P2 gene, complete cds; and polyprotein gene, partial cds.

ACC No: JN050877

Dated: 2012-07-25 | Length: 1023 | CRC: -811924848

                
ID   JN050877; SV 1; linear; genomic DNA; STD; VRL; 1023 BP.
XX
AC   JN050877;
XX
DT   06-NOV-2011 (Rel. 110, Created)
DT   25-JUL-2012 (Rel. 113, Last updated, Version 3)
XX
DE   Fig badnavirus 1 isolate CA 32 P2 gene, complete cds; and polyprotein gene,
DE   partial cds.
XX
KW   .
XX
OS   Fig badnavirus 1
OC   Viruses; Retro-transcribing viruses; Caulimoviridae; Badnavirus.
XX
RN   [1]
RP   1-1023
RA   Laney A.G., Hassan M., Tzanetakis I.E.;
RT   "An integrated badnavirus is prevalent in fig germplasm";
RL   Phytopathology 0:0-0(2012).
XX
RN   [2]
RP   1-1023
RA   Laney A.G., Hassan M., Tzanetakis I.E.;
RT   ;
RL   Submitted (02-JUN-2011) to the INSDC.
RL   Plant Pathology, University of Arkansas, 495 N Campus Dr PTSC 217,
RL   Fayetteville, AR 72703, US
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1023
FT                   /organism="Fig badnavirus 1"
FT                   /host="fig cv. Black Fig 1"
FT                   /isolate="CA 32"
FT                   /mol_type="genomic DNA"
FT                   /country="USA:California"
FT                   /db_xref="taxon:1034096"
FT   CDS             25. .432
FT                   /codon_start=1
FT                   /product="P2"
FT                   /note="putative DNA-binding protein"
FT                   /db_xref="UniProtKB/TrEMBL:G8FUU2"
FT                   /protein_id="AER45360.1"
FT                   /translation="MSSYIVSQGTNSYKEAIKAPEGIESPATGFVRPADFQGGTSAARV
FT                   QIKQNNTLIQLLIQIAESLKDIREEQRVLKEEVRQLQKDKAASITEELVERLQSLSLGV
FT                   PEKKVAEKKGTFRVFKDPLRILEEEKEKLPK"
FT   CDS             429. .>1023
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="P3"
FT                   /db_xref="UniProtKB/TrEMBL:G8FUU3"
FT                   /protein_id="AER45361.1"
FT                   /translation="MNRSRTVTQQLPAVSTRRREEINRDQPLFEDQIRDYRRNQRRRFV
FT                   AEQAVRRTTGRMRGRRYNQTLEQIVDPEVELNQSMQERANLVPAEVLYRSRRDNINHQV
FT                   YNHRSEEAMLCVGEQQDRMFIQPNSFQELQRSGMQFIHLGVLQVRLQILHRADEGTMAL
FT                   VVFRDNRWQGDQSIFAISEVDLTRGSQIVYVIPDT"
XX
SQ   Sequence 1023 BP; 351 A; 207 C; 267 G; 198 T; 0 other;

jn050877 Length: 1023  25-JUL-2012  Type: N  Check: 8627  ..

       1  gaaagttgaa agttggacct cttcatgagt agttatattg tctcccaagg
      51  gacaaatagc tacaaggagg ccataaaagc tcctgaagga atagaatccc
     101  cagcaacagg gttcgtgaga ccagccgact tccagggagg aacatcggca
     151  gcgagggttc agattaagca gaataatacc cttattcagc ttctaatcca
     201  gatcgctgag tccctgaagg acatccgaga agagcagcga gtcctaaagg
     251  aggaggttag gcaactgcag aaggacaaag cagcttcaat cacagaagag
     301  cttgtggaaa gacttcaaag tctctcgtta ggagtcccag aaaagaaggt
     351  agctgagaag aaaggaactt ttagggtatt caaagaccct ttaagaatcc
     401  ttgaagagga aaaagaaaag ctgccaaaat gaacaggtcg agaacggtga
     451  ctcagcagct gccagctgtg agtaccagac ggagggaaga aattaacagg
     501  gatcaacctc tgttcgagga tcagatccgt gactaccgga ggaatcaaag
     551  gcgaaggttt gtagctgaac aagccgtaag acgaaccacg ggaagaatgc
     601  gaggacgacg atacaaccaa actctggagc agatcgtaga tccagaggta
     651  gagctgaacc aatctatgca ggaaagagcg aacctagtac ctgcagaagt
     701  tctgtaccgc tcaagaagag acaacataaa ccatcaggtc tataatcata
     751  gatccgagga agcgatgctt tgtgtaggag aacagcaaga caggatgttt
     801  atccaaccta acagcttcca agaactacaa aggagtggta tgcagttcat
     851  acatctggga gttttgcaag taagactcca gatactgcat agggcagatg
     901  aaggaacaat ggccttggta gtcttcagag ataaccgatg gcaaggagat
     951  cagtcaatct tcgcaatctc agaagttgac ttgactagag gatcgcaaat
    1001  agtatacgtg atacctgaca cga