Sequence of DPV East African cassava mosaic virus
East African cassava mosaic virus-Uganda2 Severe isolate S3C1 segment DNA-A, complete sequence.
ACC No: JN053456
Dated: 2011-09-14 | Length: 2799 | CRC: 1587966251
ID JN053456; SV 1; circular; genomic DNA; STD; VRL; 2799 BP.
XX
AC JN053456;
XX
DT 14-SEP-2011 (Rel. 110, Created)
DT 14-SEP-2011 (Rel. 110, Last updated, Version 1)
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DE East African cassava mosaic virus-Uganda2 Severe isolate S3C1 segment
DE DNA-A, complete sequence.
XX
KW .
XX
OS East African cassava mosaic virus-Uganda2 Severe
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RC Publication Status: Online-Only
RP 1-2799
RX PUBMED; 21812981.
RA Ramkat R.C., Calari A., Maghuly F., Laimer M.;
RT "Biotechnological approaches to determine the impact of viruses in the
RT energy crop plant Jatropha curcas";
RL Virol J 8:386-386(2011).
XX
RN [2]
RP 1-2799
RA Ramkat R.C.;
RT ;
RL Submitted (03-JUN-2011) to the INSDC.
RL Plant Biotechnology, Institute of Applied Microbiology, Muthgasse, Wien
RL A1190, Austria
XX
FH Key Location/Qualifiers
FH
FT source 1. .2799
FT /organism="East African cassava mosaic virus-Uganda2
FT Severe"
FT /segment="DNA-A"
FT /host="Manihot esculenta"
FT /isolate="S3C1"
FT /mol_type="genomic DNA"
FT /country="Kenya"
FT /collected_by="Rose C. Ramkat"
FT /collection_date="29-Aug-2009"
FT /db_xref="taxon:223272"
FT gene 172. .528
FT /gene="AV2"
FT CDS 172. .528
FT /codon_start=1
FT /gene="AV2"
FT /product="AV2"
FT /protein_id="AEO18143.1"
FT /translation="MWDPLVNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL
FT IGVLRCKNYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS
FT ETQDVQNVSKPRCP"
FT gene 332. .1105
FT /gene="AV1"
FT CDS 332. .1105
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="AEO18144.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA
FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGLTHR
FT VGKRFCIKSIYILGKIWMDENIKKQNHTNNVMFYLLRDRRPYGNAPQDFGQIFNMFDNE
FT PSTATIKNDLRDRFQVLRKFHATVVGGPSGMKEQALVKRFYKLNHHVTYNHQEAGKYEN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN"
FT gene complement(362. .973)
FT /gene="AC5"
FT CDS complement(362. .973)
FT /codon_start=1
FT /gene="AC5"
FT /product="AC5"
FT /protein_id="AEO18145.1"
FT /translation="MIICHVMIQLVKPFHQRLLLHARWTTNNSGMKFPQHLKPIPQIVL
FT NCCSTGLIIKHVKYLPKVLGRIAIRPSIPKQVKHHIISVILLLNIFIHPDLTKNVNGLD
FT TKPLSDPVCQPRPTRHITNHLTDTKVLHIIPLLKRLDLTWAFTALRDIWASIHSVHLGF
FT PIHGPVGPYFASGDADSGGNNTVRVWAVEVQPPPHLGYGC"
FT gene complement(1102. .1506)
FT /gene="AC3"
FT CDS complement(1102. .1506)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /protein_id="AEO18146.1"
FT /translation="MDSRTGELITAPQARNGVFTWDITNPLYFEITDHDKRPGNMNHDI
FT ITLQIRFNHNLRKALGIHKCFLNFKVWTTLRPQTGRFLRVFRYQVLKYLDMIGVISINT
FT VLQAVDHVVYDVLLNTLQVTEQHAIKFNLY"
FT gene complement(1247. .1654)
FT /gene="AC2"
FT CDS complement(1247. .1654)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcription activator protein"
FT /protein_id="AEO18147.1"
FT /translation="MPPSSPSTSHCSQVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI
FT DCINHGFSHRGTHHCASSKEWRFYLGHNKSPLFRNHRPRQETREHEPRHHHTPDTVQPQ
FT PSEGIGDSQVFSQLQGLDDLTASDWSFLKSI"
FT gene complement(1563. .2642)
FT /gene="AC1"
FT CDS complement(1563. .2642)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication-associated protein"
FT /protein_id="AEO18148.1"
FT /translation="MPRAGRFQINAKNYFITYPRCSLTKEEALSQLQALSFPTIIKFIR
FT VCRELHQDGVPHLHVLIQFEGKFQCTNPRFFDLISPSRSTHFHPNIQGAKSSSDVKAYI
FT EKGGEFLDAGLFQVDARSARGEGQHLAQVYADALNASSKSEALQIIKEKDPKSFFLQFH
FT NISANADRIFQAPPQTYVSPFLSSSFTQVPEDIEVWVSENICSPAARPWRPISIVLEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVNSIDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKAWALKNATFITLHEPL
FT FSSAHQSPTPHSEDQGRQT"
FT gene complement(2252. .2485)
FT /gene="AC4"
FT CDS complement(2252. .2485)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4"
FT /protein_id="AEO18149.1"
FT /translation="MGCLISMFSSNSKASSNVPTRDSSISFPHPDQHISIRTFRELNHR
FT PMSKLTLKREGNFLTLDFSKSMPEVQGGRANI"
XX
SQ Sequence 2799 BP; 733 A; 552 C; 730 G; 784 T; 0 other;
jn053456 Length: 2799 14-SEP-2011 Type: N Check: 4962 ..
1 accggatggc cgcgcccgaa aaagcaggtg gaccccacaa tgaccgcgcc
51 cgtgaaagaa agtggtccct gcgcactggt tttggtcggc cagtcatatt
101 cacgcgtgaa agtctagata tttgttgttt gtctttatag acttcgtcgc
151 gaagtagtag agcgcgtcaa catgtgggat ccattggtga acgattttcc
201 cgaaaccgtt cacggtttcc gttctatgct tgcggttaaa tacctgttac
251 atctggaaca ggaatacgat cgcggtactg tcggggctga gtatatacgg
301 gatctaatag gggttctacg gtgtaagaat tatgtcgaag cgaccaggag
351 atataataat ctcaacaccc gtatccaagg tgcggaggag gctgaacttc
401 gacagcccat acacgaaccg tgttgttgcc cccactgtcc gcgtcaccag
451 aagcaaaata tgggccaaca ggcccatgta tcggaaaccc aagatgtaca
501 gaatgtatcg aagcccagat gtccctaagg gctgtgaagg cccatgtaag
551 gtccagtcgt ttgagcagag ggatgatgtg aagcaccttg gtatctgtaa
601 ggtgattagt gatgtgacgc gtgggcctgg gctgacacac agggtcggaa
651 agaggttttg tatcaagtcc atttacattc ttggtaagat ctggatggat
701 gaaaatatta agaagcagaa tcacactaat aatgtgatgt tttacctgct
751 tagggataga aggccgtatg gcaatgcgcc ccaagacttt gggcagatat
801 ttaacatgtt tgataatgag cccagtactg caacaattaa gaacgatttg
851 agggataggt ttcaggtgtt gaggaaattt catgccactg ttgttggtgg
901 tccatctggc atgaaggagc aggcgttggt gaaaaggttt tacaagctga
951 atcatcacgt gacatataat catcaggagg cagggaagta tgagaatcac
1001 acagagaatg ctttgttatt gtatatggca tgtacacatg cctcgaatcc
1051 tgtgtatgct acgctgaaaa tacgcatcta tttttatgat gcagtgacaa
1101 attaataaag gttgaatttt attgcatgtt gctccgtaac ttggagtgtg
1151 tttagtaata catcgtacac aacatgatca acagcttgaa ggacagtgtt
1201 aatggaaata acgcctatca tatctaaata cttgagcact tgatatctaa
1251 atactcttaa gaaacgacca gtctgaggcc gtaaggtcgt ccagaccttg
1301 aagttgagaa aacacttgtg aatccccaat gccttccgaa ggttgtggtt
1351 gaaccgtatc tggagtgtga tgatgtcgtg gttcatgttc cctggtctct
1401 tgtcgtggtc ggtgatttcg aaatagaggg gatttgttat gtcccaggta
1451 aaaacgccat tccttgcttg aggcgcagtg atgagttccc ctgtgcgaga
1501 atccatggtt gatgcagtcg atatggagat agaacgagca gccgcattca
1551 aggtctaccc gcctacgtct gacggccctg gtcttcgctg tgcggtgttg
1601 gactttgatg ggcacttgag aacaatggct cgtggagggt gatgaaggtg
1651 gcattcttta aagcccaggc tttaagggat tggttctttt cctcgtccag
1701 aaattcttta tatgaggatg ttggtcctgg attgcagagg aagatagttg
1751 gaatgccgcc tttaatttga attggcttcc cgtattttgt attgctttgc
1801 cagtcccttt gggcccccat gaattccttg aagtgcttga gatagtgggg
1851 gtcgacgtca tcaatgacgt tgtaccaggc gtcgattgaa tttaccttgg
1901 gagacagatc caggtgtcca caaagataat tatgtggtcc cagtgaacga
1951 gcccacattg ttttgccggt tcggctatca ccttctagaa caatactgat
2001 cggtctccat ggccgcgcag cgggactgca tatattttca gatacccata
2051 cctctatgtc ttctgggact tgtgtaaaag aggatgataa gaacggacta
2101 acgtaagttt gtggcggagc ctggaagatt ctatctgcgt tagcagatat
2151 gttatggaac tgtaaaaaaa aggactttgg atctttttct ttaataattt
2201 gaagagcctc ggatttagac gaagcattca acgcgtctgc atatacctga
2251 gctaaatgtt ggccctcccc ccttgcactt ctggcatcga cttggaaaag
2301 tccagcgtca agaaattccc ctcccttttc aatgtaagct ttgacatcgg
2351 acgatgattt agctccctga atgttcggat ggaaatgtgt tgatcgggat
2401 ggggaaatga gatcgaagaa tctcgggttg gtacattgga acttgccttc
2451 gaattggatg agaacatgga gatgaggcac cccatcctga tgtagttctc
2501 tgcaaaccct aatgaatttg ataatcgtcg ggaacgaaag ggcttgtaat
2551 tgggaaaggg cctcttcttt tgttaatgag catcggggat aggttatgaa
2601 ataatttttg gcatttattt gaaaacgacc ggctcttggc atattggctg
2651 tcgttttgga tcgggggaca ctcaaaactc caggggaacg gtggaatggg
2701 gggcattata tatgatgtcc cccaatggca tatgtgtaaa taggtagact
2751 tccattcaaa atttgaattc cgagtattgg cggccatccg attaatatt