Sequence of DPV East African cassava mosaic virus
East African cassava mosaic virus-Uganda2 Severe isolate B2C5 segment DNA-A, complete sequence.
ACC No: JN053457
Dated: 2011-09-14 | Length: 2799 | CRC: 1496393343
ID JN053457; SV 1; circular; genomic DNA; STD; VRL; 2799 BP.
XX
AC JN053457;
XX
DT 14-SEP-2011 (Rel. 110, Created)
DT 14-SEP-2011 (Rel. 110, Last updated, Version 1)
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DE East African cassava mosaic virus-Uganda2 Severe isolate B2C5 segment
DE DNA-A, complete sequence.
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KW .
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OS East African cassava mosaic virus-Uganda2 Severe
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RC Publication Status: Online-Only
RP 1-2799
RX PUBMED; 21812981.
RA Ramkat R.C., Calari A., Maghuly F., Laimer M.;
RT "Biotechnological approaches to determine the impact of viruses in the
RT energy crop plant Jatropha curcas";
RL Virol J 8:386-386(2011).
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RN [2]
RP 1-2799
RA Ramkat R.C.;
RT ;
RL Submitted (03-JUN-2011) to the INSDC.
RL Plant Biotechnology, Institute of Applied Microbiology, Muthgasse, Wien
RL A1190, Austria
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FH Key Location/Qualifiers
FH
FT source 1. .2799
FT /organism="East African cassava mosaic virus-Uganda2
FT Severe"
FT /segment="DNA-A"
FT /host="Manihot esculenta"
FT /isolate="B2C5"
FT /mol_type="genomic DNA"
FT /country="Kenya"
FT /collected_by="Rose C. Ramkat"
FT /collection_date="29-Aug-2009"
FT /db_xref="taxon:223272"
FT gene 172. .528
FT /gene="AV2"
FT CDS 172. .528
FT /codon_start=1
FT /gene="AV2"
FT /product="AV2"
FT /protein_id="AEO18150.1"
FT /translation="MWDPLVNDFPETVHGFRSMLAVKYLLHLEQEYGRGTVGAEYIRDL
FT IGVVRCKNYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS
FT ETQDVQTVSKPRCP"
FT gene 332. .1105
FT /gene="AV1"
FT CDS 332. .1105
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="AEO18151.1"
FT /translation="MSKRPGDIIISTPVSKVRKRLNFDSPYTNRVVAPTVRVTRSKIWA
FT NRPMYRKPKMYRLYRSPDVPKGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGLTHR
FT VGKRFCIKSIYILGKIWMDENIKKQNHTNNVMFYLLRDRRPYGNAPQNFGQIFNMFDNE
FT PSTATIKNDLRDRFQVLRKFHATVVGGPSGMKEQALVKRFYKLNHHVTYNHQEAGKYEN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN"
FT gene complement(362. .973)
FT /gene="AC5"
FT CDS complement(362. .973)
FT /codon_start=1
FT /gene="AC5"
FT /product="AC5"
FT /protein_id="AEO18152.1"
FT /translation="MIICHVMIQLVKPFHQRLLLHARWTTNNSGMKFPQHLKPIPQIVL
FT NCCSTGLIIKHVKYLPKVLGRIAIRPSIPKQVKHHIISVILLLNIFIHPDLTKNVNGLD
FT TKPLSDPVCQPRPTRHITNHLTDTKVLHIIPLLKRLDLTWAFTALRDIWASIQSVHLGF
FT PIHGPVGPYFASGDADSGGNNTVRVWAVEVQPLPHLGYGC"
FT gene complement(1102. .1506)
FT /gene="AC3"
FT CDS complement(1102. .1506)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /protein_id="AEO18153.1"
FT /translation="MDSRTGELITAPQARNGVFTWDITNPLYFEITKHHQRPGNMNHDI
FT ITLQIRFNHNLRKALGIHKCFLNFKVWTTLRPQTGRFLRVFRYQVLKYLDMIGVISINT
FT VLQAVDHVVYDVLLNTLQVTEQHAIKFNLY"
FT gene complement(1247. .1654)
FT /gene="AC2"
FT CDS complement(1247. .1654)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcription activator protein"
FT /protein_id="AEO18154.1"
FT /translation="MPPSSPSTNHCSQVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI
FT DCINHGFSHRGTHHCSSSKEWRFYLGHNKSPLFRNHQAPPKARQHEPRHHHTPDTVQPQ
FT PAEGIGDSQVFSQLQGLDDLTASDWSFLKSI"
FT gene complement(1563. .2642)
FT /gene="AC1"
FT CDS complement(1563. .2642)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication-associated protein"
FT /protein_id="AEO18155.1"
FT /translation="MPRAGRFQINAKNYFITYPRCSLTKEEALSQLQALSYPTIIKFIR
FT VCRELHQDGVPHLHVLIQFEGKFQCTNPRFFDLISPCRCTHFHPNIQGAKSWSDVKSYM
FT EKGGEFVEWGLFQIDARSARGEGQHLAQVYAEALNASTNSEALQIIKEKDPKSFFLQFH
FT NISANADRIFQDPPQTYVSPFLSSSFTQVPEDIEVWVSENICSPAARPWRPISIVLEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGPQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKVWALKNATFITLHEPL
FT FSSAHQSPTPHSQDQGRQT"
FT gene complement(2252. .2485)
FT /gene="AC4"
FT CDS complement(2252. .2485)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4"
FT /protein_id="AEO18156.1"
FT /translation="MECLISMFSSNSKASSNVPTRDSSISFPHADAPISIPTFKEPNHG
FT PMSNLTWKREGNLLNGDFSKSMPEVQGGRANI"
XX
SQ Sequence 2799 BP; 733 A; 547 C; 727 G; 792 T; 0 other;
jn053457 Length: 2799 14-SEP-2011 Type: N Check: 6157 ..
1 accggatggc cgcgcccgaa aaagcaggtg gaccccacaa tgaccgcgcc
51 cgcgaaagaa agtggtccct gcgcacttgt tttggtcggc cagtcatatt
101 cacgcgtgaa agtctatata tttgttgttt gtctttatag acttcgtcgc
151 gaagtagtag agcgcgtcaa catgtgggat ccattggtga acgattttcc
201 cgaaaccgtt cacggtttcc gttctatgct tgctgttaaa tacctgttac
251 atctggaaca ggaatacggt cgcggtactg tcggggctga gtatatacgg
301 gatctaatag gggttgtacg gtgtaagaat tatgtcgaag cgaccaggag
351 atataataat ctcaacaccc gtatccaagg tgcggaagag gctgaacttc
401 gacagcccat acacgaaccg tgttgttgcc cccactgtcc gcgtcaccag
451 aagcaaaata tgggccaaca ggcccatgta tcggaaaccc aagatgtaca
501 gactgtatcg aagcccagat gtccctaagg gctgtgaagg cccatgtaag
551 gtccagtcgt ttgagcaaag ggatgatgtg aagcaccttg gtatctgtaa
601 ggtgattagt gatgtgacgc gtgggccggg gctgacacac agggtcggaa
651 agaggttttg tatcaagtcc atttacattc ttggtaagat ctggatggat
701 gaaaatatta agaagcagaa tcacactaat aatgtgatgt tttacctgct
751 tagggataga aggccgtatg gcaatgcgcc ccaaaacttt gggcagatat
801 ttaacatgtt tgataatgag cccagtactg caacaattaa gaacgatttg
851 agggataggt ttcaggtgtt gaggaaattt catgccactg ttgttggtgg
901 tccatctggc atgaaggagc aggcgttggt gaaaaggttt tacaagctga
951 atcatcacgt gacatataat catcaggagg cagggaaata tgagaatcac
1001 acagagaatg ctttgttatt gtatatggca tgtacacatg cctcgaatcc
1051 tgtgtatgct acgctgaaaa tacgcatcta tttttatgat gcagtgacaa
1101 attaataaag gttgaatttt attgcatgtt gctccgtaac ttggagtgtg
1151 tttagtaata catcgtacac aacatgatca acagcttgaa ggacagtgtt
1201 aatggaaata acgcctatca tatctaaata cttgagcact tgatatctaa
1251 atactcttaa gaaacgacca gtctgaggcc gtaaggtcgt ccagaccttg
1301 aagttgagaa aacacttgtg aatccccaat gccttccgca ggttgtggtt
1351 gaaccgtatc tggagtgtga tgatgtcgtg gttcatgttg cctggccttt
1401 ggtggtgctt ggtgatttcg aaatagaggg gatttgttat gtcccaggta
1451 aaaacgccat tccttgcttg aggagcagtg atgagttccc ctgtgcgaga
1501 atccatggtt gatgcagtcg atatggagat agaacgagca gccgcattca
1551 aggtctactc gcctacgtct gacggccctg gtcttggctg tgcggtgttg
1601 gactttgatg ggcacttgag aacaatggtt cgtggagggt gatgaaggtg
1651 gcattcttta aagcccagac tttaagagat tggttctttt cctcatccag
1701 aaattcttta tatgaggatg ttggtcctgg attgcagagg aagatagtgg
1751 gaatgccgcc ttttatttga attggcttcc cgtattttgt gttgctttgc
1801 cagtcccttt ggggccccat gaattccttg aagtgcttga gatagtgggg
1851 gtcgacgtca tcaatgacgt tgtaccaggc gtcgtttgaa tataccttgg
1901 gagacagatc caggtgtcca caaagataat tatggggtcc cagtgaacga
1951 gcccacattg ttttgccggt tcggctatca ccttctagaa caatactgat
2001 cggtctccat ggccgcgcag cgggactgca tatattttcg gatacccata
2051 cctctatgtc ttctgggact tgtgtaaaag aggatgataa gaacggacta
2101 acgtaagttt gtggcggatc ctggaagatt ctatctgcgt tagcagatat
2151 gttatggaac tgtaaaaaaa aggactttgg atctttttct ttaataattt
2201 gaagagcttc ggaattagtc gaagcgttca acgcttctgc atatacctga
2251 gctaaatgtt ggccctcccc ccttgcactt ctggcatcga tttggaaaag
2301 tccccattca acaaattccc ctcccttttc catgtaagat ttgacatcgg
2351 accatgattt ggctccttga atgttgggat ggaaatgggt gcatcggcat
2401 ggggaaatga gatcgaagaa tctcgggttg gtacattgga acttgccttc
2451 gaattggatg agaacatgga gatgaggcac tccatcctga tgtagttctc
2501 tgcaaaccct aatgaatttg ataatcgtcg ggtacgaaag ggcttgtaat
2551 tgggaaaggg cctcttcttt tgttaatgag catcggggat aggttatgaa
2601 ataatttttg gcatttattt gaaaacgacc ggctcttggc atattggctg
2651 tcgttttgga tcgggggaca ctcaaaactc tggagcaacg gtggaatggg
2701 gggcattata tatgatgtcc cccaatggca tatgtgtaaa taggtagact
2751 tccattcaaa atttgaatgc cgaatattgg cggccatccg attaatatt