Sequence of DPV Cucumber mosaic virus

Cucumber mosaic virus strain CLW2 movement protein and coat protein genes, complete cds.

ACC No: JN054635

Dated: 2011-11-02 | Length: 2219 | CRC: 823442910

                
ID   JN054635; SV 1; linear; genomic RNA; STD; VRL; 2219 BP.
XX
AC   JN054635;
XX
DT   02-NOV-2011 (Rel. 110, Created)
DT   02-NOV-2011 (Rel. 110, Last updated, Version 1)
XX
DE   Cucumber mosaic virus strain CLW2 movement protein and coat protein genes,
DE   complete cds.
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC   Cucumovirus.
XX
RN   [1]
RP   1-2219
RA   Lee W.W., Roff M., Othman R.Y.;
RT   "Genomic analysis of Cucumber mosaic virus strain CLW2 from Malaysia
RT   suggests a subgroup IB virus with a unique deletion in the
RT   methyltransferase domain of the 1a replicase protein that does not affect
RT   replication";
RL   Unpublished.
XX
RN   [2]
RP   1-2219
RA   Lee W.W., Roff M., Othman R.Y.;
RT   ;
RL   Submitted (03-JUN-2011) to the INSDC.
RL   Centre for Research in Biological for Agriculture (CEBAR), University of
RL   Malaya, Level 5, Block B, Institute of Postgraduate Studies Building, Kuala
RL   Lumpur, Kuala Lumpur 50603, Malaysia
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2219
FT                   /organism="Cucumber mosaic virus"
FT                   /host="cucumber"
FT                   /strain="CLW2"
FT                   /mol_type="genomic RNA"
FT                   /country="Malaysia"
FT                   /note="acronym: CMV"
FT                   /db_xref="taxon:12305"
FT   CDS             121. .960
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /note="3a"
FT                   /protein_id="AER35118.1"
FT                   /translation="MAFQGTSRTLTQQSSAATSDDLQKILFSPEAIKKMATECDLGRHH
FT                   WMRADNAISVRPLVPEVTHGRIASFFKSGYDVGELCSKGYMSVPQVLCAVTRTVSTDAE
FT                   GSLRIYLADLGDKELSPIDGQCVSLHNHDLPALVSFQPTYDCPMESVGNRKRCFAVVIE
FT                   RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAIARLLK
FT                   SQLNNIESSQYVLTDSKINQNARSESEDLNVESPPVAIGSSSASRSETFRPQVVNGL"
FT   CDS             1261. .1917
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="3b"
FT                   /protein_id="AER35119.1"
FT                   /translation="MDKSESTSAGRNRRRRPRRGSRSASSSADATFRVLSQQLSRLNKT
FT                   LAAGRPTINHPTFVGSDRCKPGYTFTSITLKPPKIDKGSYYGKRLLLPDSVTEFDKKLV
FT                   SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVSAISAMFADGASPVLVYQYAASGVQAN
FT                   NKLLYDLSVVRADIGDMRKYAVLVYSKDDALETDELVLHVDIEHQRIPTSGVLPV"
XX
SQ   Sequence 2219 BP; 506 A; 518 C; 536 G; 659 T; 0 other;

jn054635 Length: 2219  02-NOV-2011  Type: N  Check: 8917  ..

       1  gtaatcttac cactgtgtgt gtgcgtgtgt gtgtgtcgcg tcgtgtcgag
      51  tcgtgttgtc cgcacatttg agtcgtgctg tccgcacatt ctttatttca
     101  gtgtgttaga ttcccgaggc atggctttcc aaggtaccag taggacttta
     151  actcaacagt cctcagcggc tacgtctgac gatcttcaga agatattatt
     201  tagccctgaa gccattaaga aaatggctac tgagtgtgac ctaggccggc
     251  atcattggat gcgtgctgat aatgcgatat cagtccggcc cctcgttccc
     301  gaagtaaccc atggtcgtat tgcttctttc tttaagtctg gatatgatgt
     351  cggtgaattg tgctctaaag gatatatgag cgttcctcaa gtgttgtgtg
     401  ctgttactcg aacagtttcc accgatgctg agggatcttt gagaatttac
     451  ctggctgatc taggcgacaa ggagttgtct cctatagatg ggcaatgcgt
     501  ttcattacat aaccatgatc tccccgcttt agtgtctttc caaccgacgt
     551  atgactgtcc catggaaagt gttgggaacc gtaagcggtg ttttgctgtc
     601  gttatcgaga gacatggtta tattgggtat accggcacca cagcaagcgt
     651  gtgtagtaat tggcaagcac gattttcttc taagaataac aactacactc
     701  atatcgctgc tgggaagact ctagtactgc cattcaacag attagctgag
     751  caaacgaaac cgtcagccat tgctcgtctg ttgaagtcgc aattgaataa
     801  catagaatct tcgcaatacg ttttaacgga ttcgaagatt aatcaaaatg
     851  cgcgcagtga gtccgaggat ttgaatgttg aaagccctcc cgtcgcaatc
     901  gggagttctt ccgcgtcccg ctccgaaacc tttagaccgc aggtggttaa
     951  cggtctttag tgttttcgtt gcgtattaga ttatatgtat gtgtgagtct
    1001  atacataata ctatacctat agtgtcctgt gtgagttgat acagtagaca
    1051  actgtgacgc gatgctgtgt tgagaagaaa gcacatctgg tctagtaaaa
    1101  cccacatcat tagctttgag gttcaattcc tcttgctccc tgatgggctc
    1151  cctttacttt tcatggatgc ttctccacga gattgcgttt cgtctactta
    1201  tcataagagt attgtgctgt gattttctct tttgtgttgt agattgagtc
    1251  gagtcgagtc atggacaaat ctgaatcaac cagtgccggt cgtaatcgtc
    1301  gacgtcgtcc gcgtcgcggt tcccgctccg cttcctcctc cgcggatgct
    1351  acatttagag tcctgtcgca acagctttcg cgacttaata agacgttagc
    1401  agctggtcgt cctactatta accacccaac ctttgtgggt agtgatcgtt
    1451  gtaaacctgg gtacacgttc acctcgatta ccctgaagcc accgaaaata
    1501  gacaaaggtt cttattatgg caaaaggttg ttacttcctg attcagtcac
    1551  tgagttcgat aagaagcttg tttcgcgcat tcaaattcga gttaatcctt
    1601  tgccgaaatt tgattctacc gtgtgggtga cggtccgtaa agttcctgcc
    1651  tcctcggacc tgtccgtttc cgccatctct gctatgttcg cggacggagc
    1701  ctcaccggta ctggtttatc agtacgctgc atctggcgtt caagccaaca
    1751  acaaattgtt gtatgatctt tcagtggtgc gcgctgatat tggtgacatg
    1801  agaaagtacg ccgtgctcgt gtattcaaaa gacgatgcgc tcgagacgga
    1851  tgagctagta cttcatgttg acatcgagca ccaacgcatt cccacgtctg
    1901  gggtgctccc agtttgaact cgtgttttcc aggatcctcc ctccgttttc
    1951  tgtggcggga gctgagttgg tagtgttgct ataaactacc tgaagtcact
    2001  aaacgcttcg cggtgaacgg gttgtccatc cagctaacgg ctaaaatggt
    2051  cagtcgtgga gaaatccacg ccagtagact tacaagtctc tgaggtgcct
    2101  ttgaaaccat ctcctaggtt tcttcggaag gacttcggtc cgtgtacttc
    2151  cagcacaaga tgctggtatt agggtacggg catcccccca ctttagtggg
    2201  ggtctctcaa aggagacca