Sequence of DPV Tomato leaf curl Joydebpur virus
Tomato leaf curl Joydebpur virus clone NKJ1 segment DNA-A, complete sequence.
ACC No: JN176565
Dated: 2013-01-29 | Length: 2767 | CRC: -652588030
ID JN176565; SV 1; circular; genomic DNA; STD; VRL; 2767 BP.
XX
AC JN176565;
XX
DT 27-NOV-2011 (Rel. 110, Created)
DT 29-JAN-2013 (Rel. 115, Last updated, Version 3)
XX
DE Tomato leaf curl Joydebpur virus clone NKJ1 segment DNA-A, complete
DE sequence.
XX
KW .
XX
OS Tomato leaf curl Joydebpur virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2767
RX PUBMED; 22918555.
RA Tiwari N., Singh V.B., Sharma P.K., Malathi V.G.;
RT "Tomato leaf curl Joydebpur virus: a monopartite begomovirus causing severe
RT leaf curl in tomato in West Bengal";
RL Arch. Virol. 158(1):1-10(2013).
XX
RN [2]
RP 1-2767
RA Tiwari N., Sharma P.K., Malathi V.G.;
RT ;
RL Submitted (23-JUN-2011) to the INSDC.
RL Advanced Centre for Plant Virology, Division of Plant Pathology, Indian
RL Agricultural Research Institute, Krishan Marg, New Delhi, New Delhi 110012,
RL India
XX
FH Key Location/Qualifiers
FH
FT source 1. .2767
FT /organism="Tomato leaf curl Joydebpur virus"
FT /segment="DNA-A"
FT /host="tomato"
FT /mol_type="genomic DNA"
FT /country="India:Kalyani, West Bengal"
FT /isolation_source="leaf"
FT /collection_date="2008"
FT /identified_by="Neha Tiwari"
FT /clone="NKJ1"
FT /db_xref="taxon:309390"
FT gene 148. .510
FT /gene="AV2"
FT /note="viral movement"
FT CDS 148. .510
FT /codon_start=1
FT /gene="AV2"
FT /product="pre-coat protein"
FT /note="viral movement"
FT /db_xref="GOA:G9FLS9"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:G9FLS9"
FT /protein_id="AET87473.1"
FT /translation="MWDPVNDFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDLI
FT SVIRARNYVEATSRYNHFHARLEGTPPSQLRQPIFQPCCCPHCPRHQSKSMGEQAHEQE
FT AQDVQDVQKPRCAEGM"
FT gene complement(283. .573)
FT /gene="AC5"
FT CDS complement(283. .573)
FT /codon_start=1
FT /gene="AC5"
FT /product="AC5"
FT /db_xref="UniProtKB/TrEMBL:G9FLT0"
FT /protein_id="AET87474.1"
FT /translation="MTLPMCWTSCRDSKDWTLHGPSHPLGTSGLLYILYILGFLFMGLF
FT AHAFALVTRTMGAAARLEYGLSKLRRRRTFEAGVEMIISAGRFDIISSPDD"
FT gene 305. .1075
FT /gene="AV1"
FT CDS 305. .1075
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /note="encapsidation and vector transmission"
FT /db_xref="GOA:G9FLT1"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:G9FLT1"
FT /protein_id="AET87477.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYSSRAAAPIVRVTKAKAWA
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVQHIGKVMCVSDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH
FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT gene complement(1078. .1482)
FT /gene="AC3"
FT CDS complement(1078. .1482)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /note="REn"
FT /db_xref="GOA:G9FLT2"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:G9FLT2"
FT /protein_id="AET87478.1"
FT /translation="MDSRTGELITAAQAENGVFIWEITNPLYFKITEHHNRPFLRNRDI
FT ITVQIRFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVLQFLNNFAVISINN
FT VIRAVDHVLWNVIAHTIHVQQWYAIKYNIY"
FT gene complement(1223. .1627)
FT /gene="AC2"
FT /note="transactivator protein"
FT CDS complement(1223. .1627)
FT /codon_start=1
FT /gene="AC2"
FT /product="AC2"
FT /note="TrAP"
FT /db_xref="GOA:G9FLT3"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:G9FLT3"
FT /protein_id="AET87479.1"
FT /translation="MRPSSPSKAHSTQVPIKVQHRIAKKGTRRRRVDLDCGCSYFIALR
FT CHDYGFTHRGTHHCSSGREWRVYLGDNKSPIFQDNRAPQQAIPEEPRHHHRADTVQSQP
FT EESVGDTQMFSNLPNLDDLTASDWSFLKGI"
FT gene complement(1530. .2615)
FT /gene="AC1"
FT CDS complement(1530. .2615)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication initiation protein"
FT /note="Rep"
FT /db_xref="GOA:G9FLT4"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:G9FLT4"
FT /protein_id="AET87475.1"
FT /translation="MPPPKRFQIYAKNYFLTYPQCSLTKEDALSQLQNINTPTNKLFIR
FT VSHELHENGEPHLHVLIQFEGKIQVQNNRFFDLVSPTRSTHFHPNIQGAKSSSDVKAYV
FT EKDGDFVDFGVFQIDGRSARGGQQSANDAYAEAINSGSKAAALNILREKAPKDYVLQFH
FT NLSANLDRIFTPPLEVYVSPFSSSSFDQVPDELEEWAAENVVRAAARPLRPVSVVVEGD
FT SRTGKTVWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFITLEGPL
FT YSGSNQSAAQDSQEGDQASSR"
FT gene complement(2165. .2464)
FT /gene="AC4"
FT CDS complement(2165. .2464)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4"
FT /note="suppressor of PTGS"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:G9FLT5"
FT /protein_id="AET87476.1"
FT /translation="MKMGNLICTSSYSSKVKFKCKTTDSSTSFPLPGQHISIRTFRELK
FT ARRMSRPMWKKTETSLILEFSRSMEDRLEEVSSLPTTHMPRQSIQGPKLRPSIY"
XX
SQ Sequence 2767 BP; 745 A; 591 C; 653 G; 778 T; 0 other;
jn176565 Length: 2767 29-JAN-2013 Type: N Check: 1185 ..
1 accggatggc cgcgattttt ttgtaatgtg ggccccacca cacacgtgct
51 gacaaggaca gttggaccaa ttagaaacgc cgctcaaagc ttaattgttt
101 cgtggtcccc tatataaact tgggctccaa gtagtgcact cataccaatg
151 tgggatccag taaacgactt tcctgaaacc gttcacggtt ttaggtgtat
201 gctagccgtt aaatatcttc agctagtaga aaagacgtat tctccagaca
251 ctctcgggta cgatttaatc cgggatttaa tttcagtcat cagggctaga
301 aattatgtcg aagcgaccag cagatataat catttccacg cccgcctcga
351 aggtacgccg ccgtctcaac ttcgacagcc catattccag ccgtgctgct
401 gcccccattg tccgcgtcac caaagcaaaa gcatgggcga acaggcccat
451 gaacaggaag cccaggatgt acaggatgta cagaagccca gatgtgccga
501 ggggatgtga aggcccatgt aaggtccagt cttttgagtc tcgacatgat
551 gtccaacaca taggtaaagt catgtgtgtc agtgatgtta cacgtggaac
601 tgggctgacc catcgagttg gtaaaaggtt ttgtgttaag tccgtctatg
651 ttctgggcaa gatttggatg gatgagaaca tcaagaccaa gaatcacacg
701 aatagtgtta tgtttttcct tgttagagat cgtaggcccg tagataagcc
751 ccaagacttt ggtgaggtat tcaacatgtt tgataatgag cccagtacgg
801 cgactgtgaa gaacgtgcat cgtgacaggt atcaggtgct caggaagtgg
851 catgcaactg tgactggtgg tcaatatgca tcgaaggagc aagcactcgt
901 gaagaagttt attagggtta acaattatgt tgtgtataac cagcaagagg
951 ctggcaagta tgagaatcat agtgagaatg cgttgatgtt gtatatggcg
1001 tgtacccacg cctctaaccc tgtgtatgcg acgttgaaga tacggatcta
1051 tttctacgac tctgtaacca actgaaatta ataaatatta tattttattg
1101 cataccattg ttgtacatga attgtgtgtg ctattacatt ccataataca
1151 tggtcgactg ctctaattac attgtttata ctaattacag caaaattatt
1201 taaaaactgc aacacttggg tcctaaatac ccttaagaaa tgaccagtct
1251 gaggctgtaa ggtcgtccag attcggaagg ttagaaaaca tttgtgtatc
1301 cccaacgctt tcctcaggtt gtgattgaac cgtatctgca cggtgatgat
1351 gtctcggttc ctcaggaatg gcctgttgtg gtgctcggtt atcttgaaat
1401 ataggggatt tgttatctcc cagataaaca cgccattctc tgcctgagct
1451 gcagtgatga gttcccctgt gcgtgaatcc atagtcgtgg cagcgtaatg
1501 cgatgaaata tgaacagccg cagtctaggt caacgcgacg acgcctggtc
1551 cccttcttgg ctatcctgtg ctgcactttg attggaacct gagtagagtg
1601 ggccttcgag ggtgatgaag gtcgcattct tcaaagccca atttttgagt
1651 gcgctatttt tctcttcatc caagaactct ttatagctgg agttgggtcc
1701 tggattgcag aggaagatag cgggaatgcc acctttaatt tgaactggct
1751 ttccgtattt tgtatttgat tgccagtccc tttgggcccc catgaattct
1801 ttaaagtgct ttaggtagtg gggatcgacg tcatcaatga cgttgtacca
1851 ggcgtcatta ctgtagacct tagggctaag gtctagatga ccacacaaat
1901 agttgtgtgg acccaacgac ctagcccaca ccgtcttccc cgttcgacta
1951 tcaccctcta ccactacact tacgggtctt aatggccgcg cagcggcacg
2001 caccacgttc tccgcagccc attcctcaag ttcatcggga acttgatcaa
2051 aagaagaaga agaaaaagga gaaacataaa cctccaaggg aggtgtaaaa
2101 atcctatcta aatttgcact taaattatga aactgtaata cataatcttt
2151 gggagctttc tcccttaata tattgagggc cgcagctttg gaccctgaat
2201 tgattgcctc ggcatatgcg tcgttggcag actgctgacc tcctctagcc
2251 gatcttccat cgatctggaa aactccaaaa tcaacgaagt ctccgtcttt
2301 ttccacatag gccttgacat ccgacgagct tttagctccc tgaatgttcg
2351 gatggaaatg tgttgacctg gtaggggaaa cgaggtcgaa gaatctgttg
2401 ttttgcactt gaattttacc ttcgaactgt atgaggacgt gcagatgagg
2451 ttccccattt tcatgtaatt cgtgagaaac ccggatgaat aatttattag
2501 taggggtgtt tatgttttga agttgggaaa gtgcatcctc tttagtgagg
2551 gaacactgtg gataggttaa gaaataattt ttagcatata tttgaaaacg
2601 ttttggagga ggcatgttga cttggtcaat cggtactcaa caaacttggc
2651 tatgcaatcg gtgaatggta ctcaatatat agtgtgagta ccgaatggca
2701 tgttcgtaat tttgaaagaa aattcaaaat tcaaaatccg acaaaagcgg
2751 ccatccgcac taatatt