Sequence of DPV Tomato rugose yellow leaf curl virus
Tomato rugose yellow leaf curl virus isolate U2 clone 2 segment DNA_B, complete sequence.
ACC No: JN381820
Dated: 2012-06-05 | Length: 2650 | CRC: -1325361961
ID JN381820; SV 1; circular; genomic DNA; STD; VRL; 2650 BP.
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AC JN381820;
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DT 21-MAR-2012 (Rel. 112, Created)
DT 05-JUN-2012 (Rel. 113, Last updated, Version 2)
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DE Tomato rugose yellow leaf curl virus isolate U2 clone 2 segment DNA_B,
DE complete sequence.
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KW .
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OS Tomato rugose yellow leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2650
RX PUBMED; 22383056.
RA Marquez-Martin B., Maeso D., Martinez-Ayala A., Bernal R.,
RA Teresa Federici M., Vincelli P., Navas-Castillo J., Moriones E.;
RT "Diverse population of a new bipartite begomovirus infecting tomato crops
RT in Uruguay";
RL Arch. Virol. 157(6):1137-1142(2012).
XX
RN [2]
RP 1-2650
RA Marquez-Martin B., Maeso D., Martinez-Ayala A., Bernal R., Federici M.T.,
RA Vincelli P., Navas-Castillo J., Moriones E.;
RT ;
RL Submitted (20-JUL-2011) to the INSDC.
RL Virology, Inst. Hortofruticultura Subtropical y Mediterranea 'La Mayora'
RL (IHSM-CSIC), Algarrobo Costa s/n., Algarrobo Costa, Malaga 29760, Spain
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FH Key Location/Qualifiers
FH
FT source 1. .2650
FT /organism="Tomato rugose yellow leaf curl virus"
FT /segment="DNA_B"
FT /host="tomato"
FT /isolate="U2"
FT /mol_type="genomic DNA"
FT /country="Uruguay:Salto Grande"
FT /collection_date="2009"
FT /identified_by="B. Marquez-Martin"
FT /clone="2"
FT /db_xref="taxon:1162280"
FT gene 487. .1257
FT /gene="BV1"
FT CDS 487. .1257
FT /codon_start=1
FT /gene="BV1"
FT /product="NSP"
FT /db_xref="GOA:H8ZPN6"
FT /db_xref="UniProtKB/TrEMBL:H8ZPN6"
FT /protein_id="AFD62681.1"
FT /translation="MYTIRYRRGKSSAQGRCYSRYPLSKRSYSVKRTEWKRRPSKVTHA
FT DEDKKMSAQRLHENQFGPDFVMADNTALSTFISFPILGKTEPNRTRSYIKLKRLRYKGT
FT VKIERVHADVNMEGSTPKTEGVFSLVVVVDRKPHLNESGGLHTFDEIFGARINSHGKLA
FT ITPAFKDRYYIRHVLKRVLSVEKDSLMVDLDGSMSLSNRRFNCWSTFRDLERDTCNGVY
FT ANISKNALLVYYCWMSDSRSTASTFVSYDLDYVG"
FT gene complement(1363. .2244)
FT /gene="BC1"
FT CDS complement(1363. .2244)
FT /codon_start=1
FT /gene="BC1"
FT /product="MP"
FT /db_xref="GOA:H8ZPN7"
FT /db_xref="UniProtKB/TrEMBL:H8ZPN7"
FT /protein_id="AFD62682.1"
FT /translation="MESQLVHPPNAFNYIESQRDEYQLSHDQIEIKLQFPSTTSQLSAR
FT LSRSCMKIDHSVIEYRQQVPINATGTVIVELHDTRITHNESLQASWTFPIRCNIDLHYF
FT SSSFFSLKDPIPWKLYYKVCDTNVHQGTHFAKIKGKLKLSTAKHSVDIPFRAPTVKILS
FT KQFTEKDIDFSHVGYGRWERKLIRSASTARVGLPGPIEIRPGESWATRSTIGISQSDAD
FT SDIGDAAHPYRHLNRLGTTILDPGESASIVGANSTHSNITMSMAQLNDLVRSTVQECIN
FT TNCTPSQPKSLK"
XX
SQ Sequence 2650 BP; 706 A; 477 C; 642 G; 825 T; 0 other;
jn381820 Length: 2650 05-JUN-2012 Type: N Check: 8556 ..
1 actggatggc cgcccgattt tggtgtccta gcctttggtg gccccacacg
51 ctttggtgag tgagtttacg taaatgcccc tggtgtctcg ggaaagttcc
101 caaaatgtcc ctggtgtccc caaattagtt gagcgcaatt ttgacgtccg
151 cgaaatgagt ttaattgtct tttgagttcc gctgactggg tcaacttgaa
201 attcaaatta aaggcgaagt attttgtcta gccaatcatt tcgcgagtgg
251 gaagtctctt tatttatgac actgtttgtt gatgtcagtg tgtggaggaa
301 atattgtcgt cgtttgaata tataattatt gtgtttatgt ggcactattg
351 gtcatattac gtggaccaat tgaatatgtg gcacggtgtt taattattgg
401 atattagcta gtatgaattg tgtatatata gtctatattt gttgaggtgt
451 atactatgtt caattatatt tcctgtattt tggaccatgt atactattag
501 atacagacgt ggcaagtcgt cagctcaagg acgatgctat tctcgctatc
551 ccttgtccaa gcgttcttac tctgtgaaac ggactgagtg gaagcgtcgc
601 ccgagcaagg tgactcatgc tgatgaagat aaaaagatgt cagcccagcg
651 gttacatgag aaccagttcg gtcccgactt tgttatggcc gataatacag
701 cgttatcgac cttcatcagc tttcctatcc tgggtaagac cgaacccaac
751 cgaacgaggt catatattaa gttgaagcgc ctacgttaca aaggcactgt
801 gaagattgag cgtgttcatg ctgacgtgaa catggaaggt tcaactccta
851 aaactgaagg agtattttcg ctggttgtgg ttgtggatcg taaaccacat
901 ctgaatgagt ccggaggtct ccatacattt gacgagatat ttggtgcgag
951 gattaatagt catgggaagt tagccataac tcctgcgttt aaagatcgtt
1001 attacatacg tcatgtgctg aaacgtgtgt tgtcagtgga gaaggatagc
1051 ctgatggttg atctggatgg cagcatgtca ttatcgaaca ggcgtttcaa
1101 ctgttggtct acgtttaggg atctggaacg tgatacatgt aatggtgtat
1151 atgctaacat aagcaaaaac gccctcttag tgtattattg ttggatgtct
1201 gatagcagat caactgcgtc gacgtttgta tcatatgatc tggattatgt
1251 tggttgaata aatttgtttt ttgagttgtc caattataag aagatgattg
1301 gtaattaaaa caaatgtgat aaacgagcac ttggtgaaac tgatatatta
1351 ataaatgagt atttatttta acgacttggg ctgcgaagga gtacaattgg
1401 tgttgataca ttcttgtact gtcgaccgga caaggtcgtt taattgggcc
1451 attgacatgg tgatgttgga atgtgtgcta ttagccccta ctatggacgc
1501 agactctcct ggatctaata tggtagttcc taacctattg agatgtctat
1551 atgggtgtgc tgcgtcccct atgtccgagt ctgcatcaga ctgactaatc
1601 cctatggtgc tccttgtagc ccaagactct ccgggcctta tttctattgg
1651 gcctggaagc ccaactcttg ctgtggatgc ggatcggatc aatttcctct
1701 cccatctccc ataacccaca tgggagaaat ctatgtcctt ctctgtgaac
1751 tgcttggaca agatcttgac cgtcggtgcc cggaaaggga tatcaacgga
1801 atgtttagcc gtcgataatt tgagcttccc cttgatcttg gcgaagtgag
1851 tcccttgatg aacattggtg tcgcaaacct tgtaatataa tttccatgga
1901 attgggtctt tgagcgagaa gaatgaggat gagaaataat ggagatctat
1951 gttgcaccgg atcggaaatg tccacgacgc ttgtaaggac tcgttgtgtg
2001 taatcctcgt gtcatggagc tcgactatca ctgtccctgt ggcgttgatt
2051 ggtacttgct gcctatattc tatgacgctg tggtcgatct tcatacagct
2101 acgacttagt ctggcactga gttgagacgt cgtggatgga aactgcaact
2151 taatctcaat ttggtcatga gataactgat attcatcacg ctgagattct
2201 atataattaa aggcatttgg gggatgcact aactgagatt ccattggtaa
2251 acctggccgc gcagcgtaaa cgtctgggtt aatgaattga ggaagagaaa
2301 atgttatgtc taatgaattg aggaagagat aatgttatgt ctaacgaatt
2351 aacgaaagga aaacgatgag aaattgattt gaagaagaga aattgctatg
2401 aaacagaact gaagatgaaa aaatttaaat gtattgtgtt tatgtagtgg
2451 tatgagtatg aatatgaaag tgtttgtctt tcttaaatag aaaaaaactt
2501 gaataatgag gatgtgagga ggaacgtatg gaggacacca gctctcgctc
2551 tcaacttctc tcctatttgc tggtgtcctg gtgtcccttt taaaccctct
2601 tgaatcctct tgaattctta aggggcaaaa gcggccatcc atataatatt