Sequence of DPV Sida golden yellow vein virus
Sida golden yellow vein virus-Malvastrum strain CU:Camaguey 177-1:09 segment DNA-B, complete sequence.
ACC No: JN411690
Dated: 2012-02-24 | Length: 2573 | CRC: -624681788
ID JN411690; SV 1; circular; genomic DNA; STD; VRL; 2573 BP.
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AC JN411690;
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DT 18-OCT-2011 (Rel. 110, Created)
DT 24-FEB-2012 (Rel. 111, Last updated, Version 2)
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DE Sida golden yellow vein virus-Malvastrum strain CU:Camaguey 177-1:09
DE segment DNA-B, complete sequence.
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KW .
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OS Sida golden yellow vein virus-Malvastrum
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2573
RX PUBMED; 21964921.
RA Fiallo-Olive E., Navas-Castillo J., Moriones E., Martinez-Zubiaur Y.;
RT "Begomoviruses infecting weeds in Cuba: increased host range and a novel
RT virus infecting Sida rhombifolia";
RL Arch. Virol. 157(1):141-146(2012).
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RN [2]
RP 1-2573
RA Fiallo-Olive E., Navas-Castillo J., Moriones E., Martinez-Zubiaur Y.;
RT ;
RL Submitted (31-JUL-2011) to the INSDC.
RL Fruticultura Subtropical y Fitopatologia, Instituto de Hortofruticultura
RL Subtropical y Mediterranea 'La Mayora', Estacion Experimental La Mayora,
RL Algarrobo-Costa, Malaga 29750, Spain
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FH Key Location/Qualifiers
FH
FT source 1. .2573
FT /organism="Sida golden yellow vein virus-Malvastrum"
FT /segment="DNA-B"
FT /host="Malvastrum coromandelianum"
FT /strain="CU:Camaguey 177-1:09"
FT /isolate="177-1"
FT /mol_type="genomic DNA"
FT /country="Cuba"
FT /collected_by="E. Fiallo-Olive"
FT /collection_date="May-2009"
FT /db_xref="taxon:1093962"
FT gene 383. .1153
FT /gene="BV1"
FT CDS 383. .1153
FT /codon_start=1
FT /gene="BV1"
FT /product="nuclear shutting protein"
FT /db_xref="UniProtKB/TrEMBL:G5CV33"
FT /protein_id="AEQ38987.1"
FT /translation="MYLVRNKRGSTFNQRRYYPRNTVFNRSAAFKRHDVKRRLGHANKP
FT NDDPNMVAQRIHENQYSPEFVMTQNSAISTFISYPSLGKIEPSRSRSYIKLKRLRFRGT
FT VKIERVLSDVNMDGSVPKLEGVFSIVIVVDRKPHLGSSGSLHTFDELFGAMIHSHGNLG
FT ITPSLKDRFYIRHVFKQVISVDKDTTMFDVKGSTSLSNRRFNCWASFKDLECDSCKGVY
FT DNISKNALLVYYCWMSDTMSKASNFVSFDLDYIG"
FT gene complement(1189. .2070)
FT /gene="BC1"
FT CDS complement(1189. .2070)
FT /codon_start=1
FT /gene="BC1"
FT /product="movement protein"
FT /db_xref="UniProtKB/TrEMBL:G5CV34"
FT /protein_id="AEQ38988.1"
FT /translation="MDSQLMNPPSAFNYIESHRDEYQLCHDLTEIVMQFPSTAAQITAR
FT LSRSCMKIDHCVIEYRQQVPINASGTVIVEIHDKRMTDNESLQASWTFPIRCNIDLHYF
FT SASFFSLKDPIPWKLYYRVSDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILS
FT KQFTDKDVDFSHVDYGKWERKPIRCASMSRVGIRGPIEIRPGESWASRSTIGTAQSDAD
FT SEIENELHPYRHLSRLGTTVLDPGESASVVGAQRAESNITMSLGQLNELVRTTVQECIN
FT SNCRASQPKSLQ"
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SQ Sequence 2573 BP; 660 A; 522 C; 564 G; 827 T; 0 other;
jn411690 Length: 2573 24-FEB-2012 Type: N Check: 8007 ..
1 accggatggc cgcgctttgg tgcccccctg gtgcccgctc tcacgcgctc
51 ccctccctgg tgccttctca cgcgctcttc cattggtgct ggtgttccac
101 gctccttttt gtgtttggcc tttagttcaa attaaagggt tatgctttat
151 cgcgcgattt gaatattatt ggtcgcgatg actgaccatg gcccattgta
201 cttgattatt gacgtggctt aatgttgtcc atgttgctga gcctatttgt
251 ttaatcatga tcgacatgcc ttttctatat attttagaga agtatgtatc
301 atacgtcaag tggctcattt gtgtcccacg tttatattgt tattcctaat
351 aattgtttat ctattattat taacatctga atatgtatct cgttaggaat
401 aaacgtgggt ccacattcaa ccaacgtcgt tattatccac gtaatactgt
451 gtttaaccga tcagctgctt ttaagagaca tgatgtcaaa cgacgattgg
501 gtcatgcgaa taagcccaat gacgatccca atatggtagc ccaacgcatt
551 catgagaatc aatatagtcc agagtttgtt atgacacaga actccgccat
601 atcaaccttc atcagctatc cgagtcttgg taagatagaa cccagtcgaa
651 gcaggtctta tataaagttg aaacgactcc gtttcagagg gactgtaaaa
701 attgaacgtg tactatcgga tgtgaatatg gatggttctg ttcccaaatt
751 ggaaggagtt ttctctattg ttatagttgt ggatcgtaaa ccccatttgg
801 gttcgagtgg tagtcttcat acattcgacg aactattcgg tgcaatgatc
851 catagtcatg gtaatcttgg aataactccg tctctgaaag atcgcttcta
901 tattcgacac gtgttcaaac aggtgatatc tgtcgataag gatacgacaa
951 tgtttgacgt gaaagggtct acatcgctgt ctaataggcg attcaattgc
1001 tgggcatcgt tcaaggatct tgaatgcgac tcatgcaaag gtgtctatga
1051 caacattagc aagaacgccc tattagttta ttattgctgg atgtctgata
1101 cgatgtctaa ggcgtccaat tttgtatcgt ttgatctcga ttatatcgga
1151 tgattaataa aataacattt tattatattt ataaaattct attgcaatga
1201 tttgggctgt gaagccctgc aattactatt aatacattct tggactgttg
1251 tcctaaccaa ctcgtttaat tggcccaatg acattgttat attggattct
1301 gctctctggg cccccactac cgaagcagac tctcctgggt ctagtactgt
1351 tgtcccgagc ctgctcaggt gtctgtatgg atgcagttcg ttctctatct
1401 ctgagtccgc atctgactgg gccgttccta ttgtgctcct ggaagcccat
1451 gattctccgg gccgtatttc aattgggcct cgtattccaa ctctggacat
1501 ggacgcgcat ctgatgggct tcctttccca tttcccatag tccacatgtg
1551 agaagtccac gtctttgtct gtgaactgtt tggacagtat ctttaccgtc
1601 ggtgcccgga agggaatatc cactgagtgt ttggctgtgg acaatttcag
1651 cttccctttg aacttggcga agtgggtcct ctgatgaaca ttcgtatcag
1701 aaactctgta atatagtttc catggaattg ggtctttcag agagaagaag
1751 gaagctgaga aatagtggag atctatgttg catctgatcg ggaaagtcca
1801 cgacgcctgt aatgactcat tgtctgtcat cctcttgtca tgtatctcca
1851 ctattacagt cccagaagcg tttatgggga cctgttgcct gtactctatg
1901 acgcagtggt cgattttcat acaacttctg ctaagtcttg ctgtgatctg
1951 tgccgccgtc gaaggaaatt gcatcactat ctcagttaag tcatggcaga
2001 gctgatattc atctctgtga gactctatat aattgaatgc acttggagga
2051 ttcattaatt gcgaatccat ctgagaaaat agggccgcgc agcggcactg
2101 accaccgagg ttgaactggt aaagaaagaa ttagggtttc tatttattga
2151 cagtcgaaga tgtcattcta agaataaaag gcgtactgga taaggattat
2201 gatctgagta atgataaacc cagaaatctg cagaagaaca ggaggaacaa
2251 tcgttttatg ttcttataaa ttgaagaaca aacgtttaac ttttccagaa
2301 attgctagtg ttcttgagaa aggggagaaa tatgaagagt aaagttatgt
2351 ttatggtatg ttagatctga aaggggttat atagacattc tcttttttgt
2401 tgatttattt gcagtttttt accaatggca tttttgtaat aataaggggg
2451 tcaccgattg aggctctctc aaacttgctc tagcaattgg ggaacggggt
2501 ctcatttata ctagaagcct caatagaact ctcaatctcg ttcatacacg
2551 tggcggccat ccgctataat att