Sequence of DPV Cotyledon virus Y

Cotyledon virus Y polyprotein gene, partial cds.

ACC No: JN572103

Dated: 2011-10-24 | Length: 1752 | CRC: -1360150803

                
ID   JN572103; SV 1; linear; genomic RNA; STD; VRL; 1752 BP.
XX
AC   JN572103;
XX
DT   24-OCT-2011 (Rel. 110, Created)
DT   24-OCT-2011 (Rel. 110, Last updated, Version 1)
XX
DE   Cotyledon virus Y polyprotein gene, partial cds.
XX
KW   .
XX
OS   Cotyledon virus Y
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus; unclassified Potyvirus.
XX
RN   [1]
RP   1-1752
RA   Duarte L.M.L., Alexandre M.A.V., Harakava R., Rivas E.B.;
RT   ;
RL   Submitted (10-AUG-2011) to the INSDC.
RL   Plant Virology, Biological Institute, Av. Conselheiro Rodrigues Alves,
RL   1252, Sao Paulo, SP 04014-002, Brazil
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1752
FT                   /organism="Cotyledon virus Y"
FT                   /host="Cotyledon orbiculata"
FT                   /isolate="USP"
FT                   /mol_type="genomic RNA"
FT                   /country="Brazil"
FT                   /collected_by="Ligia Duarte"
FT                   /collection_date="19-Apr-2005"
FT                   /db_xref="taxon:1096808"
FT   CDS             <1. .1560
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="AEQ75506.1"
FT                   /translation="GNNSGQPSTVVDNSLMVVLAMHYAFVKENLEFEEVEEYCKFFVNG
FT                   DDLLIAINPEKQDMLDRLSGHFSSLGLNYDFSSRTRDKTDLWFMSHRGIEVDGMYIPKL
FT                   EQERVVSILQWDRAELPEHRLEAICAAMIEAWGYPELIYRIRRFYAWLLEQHPYADLAK
FT                   EGKAPYIAEMALRRLYTNRIADEEELRQFQNLFVSLDDEFECDSFEVIHQGDNVVDAGK
FT                   EKDKQDKEKDKVVLKPGGGNTMKSKDVNAGTSGTHTIPRIKAITSKMRIPKSKGISALN
FT                   LDHLLDYVPQQVDISNTRATQAQFDTWYDAVRSTYDVSEQEMPTIMNGLMVWCIENGTS
FT                   PNINGVWVMMDGTEQVEYPLKPIIENAKPTFRQIMAHFSDVAEAYIEMRNKKEPYMPRY
FT                   GLVRNLRDMSLARYAFDFYEVTSHTSTRAREAHIQMKAPALKSAQSRMFGLDGGISPQE
FT                   ENTERPLPRMFPPTCILCLAFATCSSLPTGMKNEYLSYAIYILAFPVLLLLCCNSISIK
FT                   VV"
FT   mat_peptide     <1. .639
FT                   /product="nuclear inclusion body"
FT                   /note="NIb"
FT   mat_peptide     640. .1557
FT                   /product="coat protein"
FT                   /note="CP"
FT   3'UTR           1561. .>1752
XX
SQ   Sequence 1752 BP; 544 A; 320 C; 408 G; 479 T; 1 other;

jn572103 Length: 1752  24-OCT-2011  Type: N  Check: 2181  ..

       1  ggtaataata gcgggcaacc gtcaacagtt gtagacaatt cactaatggt
      51  tgttttagct atgcactacg cattcgtcaa ggagaacttg gaatttgaag
     101  aagttgaaga atattgtaag ttctttgtga atggagacga tcttttaatt
     151  gcgattaacc cagaaaagca agatatgttg gataggttgt ctgggcactt
     201  ttcaagttta ggactcaatt acgatttctc ctcacgaacg agagacaaaa
     251  ctgatctgtg gttcatgtct cacagaggaa tcgaggttga cggaatgtat
     301  atcccgaagt tggagcagga aagagtcgtg tcaattttac agtgggatag
     351  ggctgagcta ccagagcacc gattggaagc tatttgcgca gcaatgatag
     401  aagcatgggg ttaccctgaa ctcatatacc gaattcggcg tttttacgct
     451  tggctcttgg agcaacaccc gtatgcagac ttagctaagg aaggaaaagc
     501  tccctacata gcggaaatgg cgctaaggag actttataca aacaggattg
     551  cagatgaaga agagttacgg caatttcaga atctgtttgt tagtctcgat
     601  gatgaatttg agtgtgatag ctttgaagtc attcaccaag gagataacgt
     651  cgttgatgct ggtaaagaaa aggacaagca ggacaaagaa aaggataaag
     701  tggtgttaaa accaggaggt ggaaacacta tgaaatcaaa ggatgtgaat
     751  gctggtacat ctggaaccca taccatacca cgaataaaag caatcacatc
     801  aaagatgcgg atcccaaaat ccaaaggaat aagcgctctc aaccttgatc
     851  accttctgga ttacgtacca caacaagtgg acatatccaa cacgagagca
     901  acacaagcgc aattcgatac ctggtatgat gcggttagat ctacatacga
     951  tgttagtgag caagaaatgc caacaataat gaatggattg atggtttggt
    1001  gcattgagaa tgggacctcg cccaatatca atggagtatg ggttatgatg
    1051  gatggtactg aacaagttga atatccgttg aaacccatta ttgagaatgc
    1101  caagccaact tttcgtcaaa taatggctca cttctctgat gtagctgaag
    1151  catatatcga aatgcgcaat aagaaagaac catacatgcc acggtatggt
    1201  ttagttcgaa atttaagaga catgagttta gcacgctatg catttgactt
    1251  ttatgaagtc acgtctcata cgtcaacccg agcaagagag gcacacattc
    1301  aaatgaaagc cccagccttg aaatctgcgc agtcacgaat gtttggactt
    1351  gacggtggca tcagtccaca ggaggaaaac acagaaaggc cactaccgag
    1401  gatgtttccg ccaacatgca tactttgctt ggcgttcgca acatgtagtt
    1451  ccttgcctac tgggatgaaa aatgaatatt tatcgtatgc aatctatatt
    1501  ctggcttttc ctgtactact tttattatgt tgtaacagta tttcaattaa
    1551  agttgtttag cgtggccgca taattttgtt atgtgggtaa agctattcaa
    1601  ccctataaca aggagtgact cttgatttng tcatcgaggt gatccttttt
    1651  ctagtttgtt tctgtttacg aaaactatat aaaagttctg gattgttgtc
    1701  gtgagtggtg ttgcgattcc gtcgtagcag tgatttaaga tttcaatcag
    1751  gc