Sequence of DPV Chilli leaf curl virus
Chilli leaf curl virus isolate Sal2, complete genome.
ACC No: JN604490
Dated: 2012-01-29 | Length: 2747 | CRC: -416541961
ID JN604490; SV 1; circular; genomic DNA; STD; VRL; 2747 BP.
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AC JN604490;
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DT 29-JAN-2012 (Rel. 111, Created)
DT 29-JAN-2012 (Rel. 111, Last updated, Version 1)
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DE Chilli leaf curl virus isolate Sal2, complete genome.
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KW .
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OS Chilli leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2747
RA Khan A.J., Al-Zaidi A.M.I., Haq Q.M.I., Al-Hinai F.M.;
RT "Molecular characterization and infectivity of Chilli leaf curl virus from
RT Oman";
RL Unpublished.
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RN [2]
RP 1-2747
RA Khan A.J., Al-Zaidi A.M.I., Haq Q.M.I., Al-Hinai F.M.;
RT ;
RL Submitted (21-AUG-2011) to the INSDC.
RL Department of Crop Sciences, College of Agricultural and Marine Sciences,
RL Sultan Qaboos University, P.O. Box-34, Al-Khod 123 Muscat, Sultanate of
RL Oman
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FH Key Location/Qualifiers
FH
FT source 1. .2747
FT /organism="Chilli leaf curl virus"
FT /host="pepper"
FT /isolate="Sal2"
FT /mol_type="genomic DNA"
FT /country="Oman"
FT /collection_date="01-Apr-2011"
FT /db_xref="taxon:172278"
FT gene 150. .515
FT /gene="V2"
FT CDS 150. .515
FT /codon_start=1
FT /gene="V2"
FT /product="pre-coat protein"
FT /protein_id="AEY77422.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAVKYLQLVENSYSPDTLGYDLIRDL
FT ISVIRARNYVEATSRYNHFHARLEGTPSSQLRQPICQPCCCPHCPRHKGKGMGQQAHES
FT EAQDVQDVQKPRCSEGM"
FT gene 310. .1071
FT /gene="V1"
FT CDS 310. .1068
FT /codon_start=1
FT /gene="V1"
FT /product="coat protein"
FT /note="encapsidation"
FT /protein_id="AEY77423.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKAKAWA
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCIKGTGLTHRVGKR
FT FCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGAPQDFGDVFNMFDNEPSTAT
FT VKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHSENA
FT LMLYMACTHASNPVYATLKIRIYFYDSVSN"
FT gene complement(1065. .1469)
FT /gene="C3"
FT CDS complement(1065. .1469)
FT /codon_start=1
FT /gene="C3"
FT /product="C3 protein"
FT /protein_id="AEY77424.1"
FT /translation="MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHNRPFLRSQDI
FT ITVQIRFNHNLRKALGMHKCFLTYRIWTTLQPQTGHFLRVFKTQVLKVLNNFAVISINN
FT VNRAVDHVLWNVLDHVVYVNQSYSIKYNLY"
FT gene complement(1210. .1614)
FT /gene="C2"
FT CDS complement(1210. .1614)
FT /codon_start=1
FT /gene="C2"
FT /product="C2 protein"
FT /protein_id="AEY77425.1"
FT /translation="MRPSSPSQAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR
FT CHGYGFTHRGTHHCSSSREWRVYLGDNKSPVFQDNRAPQQAIPEKPRHHHSADTVQSQP
FT EESVGDAQMFSNLPNLDDLTASDWSFLKGI"
FT gene complement(1517. .2602)
FT /gene="C1"
FT CDS complement(1517. .2602)
FT /codon_start=1
FT /gene="C1"
FT /product="Rep"
FT /note="replication-associated protein"
FT /protein_id="AEY77426.1"
FT /translation="MPRAGRFNINAKNYFLTYPNCSLTKEEALSQLQNLETPVNKLFIR
FT VCRELHENGEPHLHVLVQFEGKYQCTNNRFFDLISPTRSAHFHPNIQRAKSSSDVKAYV
FT EKDGDFIDSGVFQIDGRSARGGCQSANDAYAEAINSGSKAAALNILREKAPKDYVLQFH
FT NLNANLDRIFTPPPDVYVSPFLSSSFDQVPGELEEWASVNVVGAAARPLRPMSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDASYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKHWALKNATFITLTGPL
FT YSGSNQSAAQAGQEGDQASSR"
FT gene complement(2152. .2445)
FT /gene="C4"
FT CDS complement(2152. .2445)
FT /codon_start=1
FT /gene="C4"
FT /product="C4 protein"
FT /protein_id="AEY77427.1"
FT /translation="MGNLIYTCSSNSKANINAQTTDSSTSFPQPGQHISIRTFRELRAL
FT QMSKPMWRKTETSLTLEFSRSMADQLEEVANLPTTHMPRQSIQGPRLRPSIF"
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SQ Sequence 2747 BP; 758 A; 555 C; 632 G; 802 T; 0 other;
jn604490 Length: 2747 29-JAN-2012 Type: N Check: 7827 ..
1 accggatggc cgcgattttt ttttaccgtg gaccccgcga tgcacgtgct
51 gacaaataca tgtggaccaa ttaaaaacgt ccctcaaagc ttaattgttt
101 cgtggtcccc tctataaact tgggctccaa gtagtgggtt tttatcacaa
151 tgtgggatcc tttactaaat gagtttcccg aaagtgttca tgggtttagg
201 tgtatgttag cagtgaaata tctgcaatta gtagaaaatt catattcgcc
251 agacacatta gggtacgatt taatcaggga tttaatttca gttattaggg
301 ctagaaatta tgtcgaagcg accagcagat ataatcattt ccacgcccgc
351 ctcgaaggta cgccgtcgtc tcaacttcga cagcccatat gccagccgtg
401 ctgctgcccc cattgtccgc gtcacaaagg caaaggcatg ggccaacagg
451 cccatgaatc ggaagcccag gatgtacagg atgtacagaa gcccagatgt
501 tccgagggga tgtgaaggcc catgtaaggt ccagtctttt gagtctagac
551 acgatgtagt tcatataggg aaggttatgt gtattaaggg taccgggtta
601 acccatagag taggtaagcg tttctgtgtt aagtctgttt atgtcttagg
651 gaagatatgg atggatgaga atatcaagac taagaatcac acgaatagtg
701 tgatgttctt ccttgtccgt gatcgtcgac ctacaggtgc accacaagat
751 tttggagatg tgtttaatat gttcgacaac gaacctagca ctgccactgt
801 gaagaatatg catagagatc gttatcaggt cttgaggaaa tggcacgcaa
851 cggttactgg tggacagtac gcgtcgaagg aacaggcatt agttaagaag
901 ttcgttaggg ttaacaatta tgttgtgtat aaccagcagg aagctggaaa
951 atatgagaat catagtgaga atgctctgat gttgtatatg gcgtgtactc
1001 acgcctctaa ccctgtgtat gctacattga agatacgtat ctatttctat
1051 gattcagtat cgaattaata aagattatat tttattgaat atgattggtt
1101 tacatataca acgtgatcta atacattcca taatacatga tcaactgctc
1151 tatttacatt gttaatacta attacagcaa aattattaag cactttcaat
1201 acttgggttt taaataccct taagaaatga ccagtctgag gctgtaaggt
1251 cgtccagatt cggtaggtta gaaaacattt gtgcatcccc aacgctttcc
1301 tcaggttgtg attgaaccgt atctgcactg tgatgatgtc ttggcttctc
1351 aggaatggcc tgttgtggtg ctctgttatc ttgaaataca ggggatttgt
1401 tatctcccag ataaacacgc cattctctgc ttgagctgca gtgatgggtt
1451 cccctgtgcg tgaatccata gccgtggcaa cgtaatgcga tgaaatatga
1501 acagccgcaa tcgaggtcaa cgcgacgacg cctggtcccc ttcttggcca
1551 gcctgtgctg cactttgatt ggaacctgag tagagtgggc ctgtgagggt
1601 gatgaaggtc gcattcttta aagcccaatg tttgagtgcg gaattctttt
1651 cttcatccaa gaactcttta tagctggaat tgggtcctgg attgcagagg
1701 aagatagcgg gaattccacc tttaatttga actggctttc cgtattttgt
1751 atttgattgc cagtcccttt gggcccccat gaattcttta aagtgtttta
1801 gataatgcgg gtcgacgtca tcaatgacgt tatacgaggc atcattgctg
1851 tacactttag ggctaaggtc taagtgacca cataggtagt tatgtggacc
1901 caacgaccta gcccacatgg tcttcccggt tcgactatca ccctcaatca
1951 caatactcat gggcctcaaa ggccgcgcag cggcacccac cacgttcaca
2001 gaagcccatt cctcaagttc accaggaact tgatcaaaag aagaagaaag
2051 aaaaggagaa acataaacat ccggtggagg cgtaaaaatc ctatctaaat
2101 tagcatttaa attatgaaat tgtaaaacat aatctttggg agctttctcc
2151 cttaaaatat tgagggccgc agccttggac cctgaattga ttgcctcggc
2201 atatgcgtcg ttggcagatt ggcaacctcc tctagctgat ctgccatcga
2251 tctggaaaac tccagagtca atgaagtctc cgtctttctc cacataggct
2301 ttgacatctg aagagctctt agctctctga atgttcggat ggaaatgtgc
2351 tgaccgggtt ggggaaatga ggtcgaagaa tctgttgttt gtgcattgat
2401 atttgccttc gaattggacg agcacgtgta gatgaggttc cccattctcg
2451 tgcaattctc tgcaaaccct aataaataat ttatttactg gggtttctaa
2501 gttttgtaat tgggaaaggg cctcttcttt agtaagagag cagttaggat
2551 atgttaggaa ataattttta gcatttatat tgaatctccc cgctctaggc
2601 atattggtgg acactcaaac ttactatgca atcggtggaa tgggggacaa
2651 tttatatgtg tccaccaatg gcaaattggt aattgttgtt acattaaaaa
2701 aatttaaaat tcaaattccg acaaaagcgg ccatccgcat taatatt