Sequence of DPV Chilli leaf curl virus
Chilli leaf curl virus isolate Taq2, complete genome.
ACC No: JN604493
Dated: 2012-01-29 | Length: 2758 | CRC: 2126416474
ID JN604493; SV 1; circular; genomic DNA; STD; VRL; 2758 BP.
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AC JN604493;
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DT 29-JAN-2012 (Rel. 111, Created)
DT 29-JAN-2012 (Rel. 111, Last updated, Version 1)
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DE Chilli leaf curl virus isolate Taq2, complete genome.
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KW .
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OS Chilli leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2758
RA Khan A.J., Al-Matrushi A.M.O., Haq Q.M.I.;
RT "Molecular characterization and infectivity of Chilli leaf curl virus from
RT Oman";
RL Unpublished.
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RN [2]
RP 1-2758
RA Khan A.J., Al-Matrushi A.M.O., Haq Q.M.I.;
RT ;
RL Submitted (22-AUG-2011) to the INSDC.
RL Department of Crop Sciences, College of Agricultural and Marine Sciences,
RL Sultan Qaboos University, P.O. Box-34, Al-Khod 123 Muscat, Sultanate of
RL Oman
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FH Key Location/Qualifiers
FH
FT source 1. .2758
FT /organism="Chilli leaf curl virus"
FT /host="tomato"
FT /isolate="Taq2"
FT /mol_type="genomic DNA"
FT /country="Oman"
FT /collection_date="01-Apr-2011"
FT /db_xref="taxon:172278"
FT gene 149. .505
FT /gene="V2"
FT misc_feature 149. .505
FT /gene="V2"
FT /note="similar to pre-coat protein due to mutation;
FT required for virus movement; V2 protein"
FT gene 309. .1082
FT /gene="V1"
FT CDS 309. .1079
FT /codon_start=1
FT /gene="V1"
FT /product="coat protein"
FT /note="encapsidation"
FT /protein_id="AEY77440.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKAKAWA
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGAPQDFGDVFNMFDNEP
FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH
FT SENALMLYMACTHASNPVYATLKIRIYFYDSVSN"
FT gene complement(1076. .1480)
FT /gene="C3"
FT CDS complement(1076. .1480)
FT /codon_start=1
FT /gene="C3"
FT /product="C3 protein"
FT /protein_id="AEY77441.1"
FT /translation="MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHNRPFLRSQDI
FT ITVQIRFNHNLRKALGMHKCFLTYRIWTTLQPQTGHFLRVFKTQVLKVLNNFAVISINN
FT VNRAVDHVLWNVLDHVVYVNQSYSIKYNLY"
FT gene complement(1221. .1625)
FT /gene="C2"
FT CDS complement(1221. .1625)
FT /codon_start=1
FT /gene="C2"
FT /product="C2 protein"
FT /protein_id="AEY77442.1"
FT /translation="MRPSSPSQAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR
FT CHGYGFTHRGTHHCSSSREWRVYLGDNKSPVFQDNRAPQQAIPEKPRHHHSADTVQSQP
FT EESVGDAQMFSNLPNLDDLTASDWSFLKGI"
FT gene complement(1528. .2613)
FT /gene="C1"
FT CDS complement(1528. .2613)
FT /codon_start=1
FT /gene="C1"
FT /product="Rep"
FT /note="replication-associated protein"
FT /protein_id="AEY77443.1"
FT /translation="MPRAGRFNINAKNYFLTYPNCSLTKEEALSQLQNLETPVNKLFIR
FT VCRELHENGEPHLHVLVQFEGKYQCTNNRFFDLISPTRSAHFHPNIQRAKSSSDVKAYV
FT EKDGDFIDSGVFQIDGRSARGGCQSANDAYAEAINSGSKAAALNILREKAPKDYVLQFH
FT NLNANLDRIFTPPPDVYVSPFLSSSFDQVPDELEEWASVNVVGAAARPFRPMSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDASYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKHWALKNATFITLTGPL
FT YSGSNQSAAQAGQEGDKASSR"
FT gene complement(2163. .2456)
FT /gene="C4"
FT CDS complement(2163. .2456)
FT /codon_start=1
FT /gene="C4"
FT /product="C4 protein"
FT /protein_id="AEY77444.1"
FT /translation="MGNLIYTCSSNSKANINAQTTDSSTSSPQPGQHISIRTFRELRAL
FT QMSKPMWRKTETSLTLEFSRSMADQLEEVANLPTTHMPRQSIQGPRLRPSIF"
XX
SQ Sequence 2758 BP; 757 A; 554 C; 636 G; 811 T; 0 other;
jn604493 Length: 2758 29-JAN-2012 Type: N Check: 4433 ..
1 accggatggc cgcgattttt tttaccgtgg accccgcgat gcacgtgctg
51 acaaatacat gtggaccaat taaaaacgtc cctcaaagct taattgtttc
101 gtggtcccct ctataaactt gggctccaag tagtgggttt ttatcacaat
151 gtgggatcct ttactaaatg agtttcccga aagtgttcat gggtttaggt
201 gtatgttagc agtgaaatat ctgcaattag tagaaaattc atattcgcca
251 gacacattag ggtacgattt aatcagggat ttaatttcag ttattagggc
301 tagaaattat gtcgaagcga ccagcagata taatcatttc cacgcccgcc
351 tcgaaggtac gccgtcgtct caacttcgac agcccatatg ccagccgtgc
401 tgctgccccc attgtccgcg tcacaaaggc aaaggcatgg gccaacaggc
451 ccatgaatcg gaagcccagg atgtacagga tgtacagaag cccagatgtt
501 cctaggggat gtgaaggccc atgtaaggtc cagtcttttg agtctagaca
551 cgatgtagtt catataggga aggttatgtg tattagtgat gttacccgtg
601 gtaccgggtt aacccataga gtaggtaagc gtttctgtgt taagtctgtt
651 tatgtcttag ggaagatatg gatggatgag aatatcaaga ctaagaatca
701 cacgaatagt gtgatgttct tccttgtccg tgatcgtcga cctacaggtg
751 caccacaaga ttttggagat gtgtttaata tgttcgacaa cgaacctagc
801 actgccactg tgaagaatat gcatagagat cgttatcagg tcttgaggaa
851 atggcacgca acggttactg gtggacagta cgcgtcgaag gaacaggcat
901 tagttaagaa gttcgttagg gttaacaatt atgttgtgta taaccagcag
951 gaagctggaa aatatgagaa tcatagtgag aatgctctga tgttgtatat
1001 ggcgtgtact cacgcctcta accctgtgta tgctacattg aagatacgta
1051 tctatttcta tgattcagta tcgaattaat aaagattata ttttattgaa
1101 tatgattggt ttacatatac aacgtgatct aatacattcc ataatacatg
1151 atcaactgct ctatttacat tgttaatact aattacagca aaattattaa
1201 gcactttcaa tacttgggtt ttaaataccc ttaagaaatg accagtctga
1251 ggctgtaagg tcgtccagat tcggtaggtt agaaaacatt tgtgcatccc
1301 caacgctttc ctcaggttgt gattgaaccg tatctgcact gtgatgatgt
1351 cttggcttct caggaatggc ctgttgtggt gctctgttat cttgaaatac
1401 aggggatttg ttatctccca gataaacacg ccattctctg cttgagctgc
1451 agtgatgggt tcccctgtgc gtgaatccat agccgtggca acgtaatgcg
1501 atgaaatatg aacagccgca atcgaggtca acgcgacgac gccttgtccc
1551 cttcttggcc agcctgtgct gcactttgat tggaacctga gtagagtggg
1601 cctgtgaggg tgatgaaggt cgcattcttt aaagcccaat gtttgagtgc
1651 ggaattcttt tcttcatcca agaactcttt atagctggaa ttgggtcctg
1701 gattgcagag gaagatagcg ggaattccac ctttaatttg aactggcttt
1751 ccgtattttg tatttgattg ccagtccctt tgggccccca tgaattcttt
1801 aaagtgtttt agataatgcg ggtcgacgtc atcaatgacg ttatacgagg
1851 catcattgct gtacacttta gggctaaggt ctaagtgacc acataggtag
1901 ttatgtggac ccaacgacct agcccacatg gtcttccctg ttcgactatc
1951 accctcaatc acaatactca tgggtctgaa aggccgcgca gcggcaccca
2001 cgacgttcac agaagcccat tcctcaagtt catcaggaac ttgatcaaaa
2051 gaagaagaaa gaaaaggaga aacataaaca tccggtggag gcgtaaaaat
2101 cctatctaaa ttagcattta aattatgaaa ttgtaaaaca taatctttgg
2151 gagctttctc ccttaaaata ttgagggccg cagccttgga ccctgaattg
2201 attgcctcgg catatgcgtc gttggcagat tggcaacctc ctctagctga
2251 tctgccatcg atctggaaaa ctccagagtc aatgaagtct ccgtctttct
2301 ccacataggc tttgacatct gaagagctct tagctctctg aatgttcgga
2351 tggaaatgtg ctgaccgggt tggggagatg aggtcgaaga atctgttgtt
2401 tgtgcattga tatttgcctt cgaattggac gagcacgtgt agatgaggtt
2451 ccccattctc gtgcaattct ctgcaaaccc taataaataa tttatttact
2501 ggggtttcta agttttgtaa ttgggaaagg gcctcttctt tagtaagaga
2551 gcagttagga tatgttagga aataattttt agcatttata ttgaatctcc
2601 ccgctctagg catattggtg gacactcaaa cttactatgg aatcggtgga
2651 atgggggaca atttatatgt gtccaccaat ggcaaattgg taattgttgt
2701 tacattaaac aaatttaaaa ttcaaattcc gacaaaagcg gccatccgca
2751 ttaatatt