Sequence of DPV Cacao swollen shoot virus
Cacao swollen shoot virus isolate CI152-09, complete genome.
ACC No: JN606110
Dated: 2012-07-02 | Length: 7203 | CRC: -1312843753
ID JN606110; SV 1; circular; genomic DNA; STD; VRL; 7203 BP.
XX
AC JN606110;
XX
DT 02-JUL-2012 (Rel. 113, Created)
DT 02-JUL-2012 (Rel. 113, Last updated, Version 1)
XX
DE Cacao swollen shoot virus isolate CI152-09, complete genome.
XX
KW .
XX
OS Cacao swollen shoot virus
OC Viruses; Retro-transcribing viruses; Caulimoviridae; Badnavirus.
XX
RN [1]
RC Publication Status: Available-Online prior to print
RP 1-7203
RA Kouakou K., Kebe B.I., Kouassi N., Ake S., Cilas C., Muller E.;
RT "Geographical distribution of Cacao swollen shoot virus molecular
RT variability in Cote d'Ivoire";
RL Plant Dis. 0:0-0(2012).
XX
RN [2]
RP 1-7203
RA Muller E., Kouakou K.;
RT ;
RL Submitted (23-AUG-2011) to the INSDC.
RL UMR BGPI, CIRAD, Campus International de Baillarguet, Montpellier 34398,
RL France
XX
FH Key Location/Qualifiers
FH
FT source 1. .7203
FT /organism="Cacao swollen shoot virus"
FT /host="cocoa"
FT /isolate="CI152-09"
FT /mol_type="genomic DNA"
FT /country="Cote d'Ivoire"
FT /isolation_source="tree"
FT /collected_by="Koffie Kouakou"
FT /collection_date="Jan-2009"
FT /note="group: variability group D"
FT /db_xref="taxon:31559"
FT CDS 318. .749
FT /codon_start=1
FT /product="hypothetical protein"
FT /note="ORF1"
FT /protein_id="AFM82588.1"
FT /translation="MSSRWENSIQEWYEKSHTANLEYLDLASVSKVTNNQIAHNLAVTF
FT DRLNLGNRVFIKNLKQIQESLVEVNTRIDTLEVGLRRLTKQLKENKPLTEPEVRRLVGE
FT IAQQPKIVEEQALKISQELEQKLAEVEKLLRNLGLVIGQ"
FT CDS 746. .1165
FT /codon_start=1
FT /product="hypothetical protein"
FT /note="ORF2"
FT /protein_id="AFM82590.1"
FT /translation="MTDSPSYQQALKEAEKVDPPALGLTTTEGVTALNGLRTVIKQNNL
FT QICLLADIADKLADLLTEQKKSRKEKAKEVAIPEDLISKLQGLSIQERGDEKVTRRKET
FT KGNLYGFKDPYKILAAEVAKITPKPPTTEKEDESN"
FT CDS 1152. .6770
FT /codon_start=1
FT /product="polyprotein"
FT /note="contains putative movement protein, capsid protein
FT and RT and RNaseH replication enzymes; ORF3"
FT /protein_id="AFM82591.1"
FT /translation="MSQTRTHQMPSVTTTVNEQGEGPLFEDQVRNYRRNQRRLFNLRKK
FT ARRAQKALTGSRSRHQETLEQEIDPQVTLRLSMQERARLVPAEVLYRSRRDTVHHRVYT
FT HRSEESILCVGGNQVDRTFIQPSSLERLQRTGMSFIHIGILQVRIQILHRQEEGTMALV
FT VFRDNRWAGDQAIFAQMEVDLTKGSQLVFVVPDTMMTIGDFARNVQLSILTRGYDNWQN
FT GEANLLVTRSMTGRLSNTPNVAFACQIASATDYLASHGVKAIAGKKVNLQQLRNQQWVL
FT RPPQADVLPMQPRSVETRNLIDGSISIRFHDYEVAPSTSGPHYNENDEEVESESEAEIR
FT EHTVAVWIIGEEEYPDDNGRIKVWEESSNGNGRFFRYYTPPSVSNEPIIATGWDDDEDD
FT DYDYDPRWDTNLESEGEEPDEPLRSEEDEEEEVQDEPVWHQEEEEEEEEEEEEEEEEED
FT EYDPNTYMAYLQKEEDDWTEIIASLNPEMEYPQRRTEVAETVFSEIVDYTPPGDTLMTP
FT VGYPPASSSRSTVTTPSRPPLYEGRIPSASRVLRRDDYTEWWQLPSSQGTTGALFVMPK
FT QIGLFHDVFSRWESITKNYVSAQGITDPTEKMEFIENLLGETEKLTWIQWRMRYEAEYQ
FT QLLTLAEGRQGTQNILSQIKRVFSLEDPASGSTRIQDSAYRDLERLTCHNIKDIVQFLN
FT DYGRLAAKSGRLFIGTELSEKLWMKMPPELGHRMREAFQKEYEGNEVGVFPRILFAYRY
FT LEQECKDAAFKRSLKSLSFCKDMPLTGYYDKSSRYGMRRSKTYKGKPHASHARIEKRKH
FT LVRNKRCKCYLRGDEGHFARECPNNKRDVKRVAIFEGINLPDDYEIVSVEEGEEDSDAI
FT YSLSENEEELQDEVLHEKVFMIREGDQSYWMGKANHWTAMVRVSYQQYHCPHQWEHNKE
FT IPIMALINCHFCKQPTNLRGRVHCPTCQLTSCYMCAPIYCDVQVQQQPKTPIPFSPNAL
FT LQQQAAYIRWLESENKRLNELVEFYKRLLDGGSRLQQELEADQKELEELEADRKELEAH
FT DKGKRVQFTEEEKVQLTEELEEIHMAYLEEDTITRVVGHTTEGPSEAKKVVKKSNMLYN
FT LEVILIIPEVGKPLKVKAILDTGATTCCININSVPKMAIEQNTFLVQFRGINSTQSVDK
FT KLRYGRMTISGHQFRFPYCYAFPLSLGDGIEMILGCNFIRGMYGGLRIEGSTITFYKNV
FT TTIQTKLAAGMVGGTTSFYPGEGGGSHFEFKASEESDDDAEIDFEIHQQIISHAVAQAT
FT TPKLSPKLKHLMGQLKDQGFIGENPMKHWASNKIHCKLDIKNPDLIIEDKPIKHLTPAM
FT EKQFAKHIKALLDIGVIRPSKSRHRTTAFIVESGTTIDPKTKKTIHGKERMVFNYKRLN
FT DNTEKDQYSLPGIHTILKRVGNKKIFSKFDLKSGFHQVAMAEESIPWTAFWVPQGLYEW
FT LAMPFGLKNAPAIFQRKMDVCFKGTEDFIAVYIDDILVFSETMEEHENHISRMLEICKR
FT HGLVLSPNKMSIAQEEIEFLGTIISKGRMKLQAHVIKKIVSKAQMELSTTKGLRSFLGL
FT LNYARIYIPNLGRKLSPLYAKVSPTGEKKLNKQDWNLINEIKQMVQKLPDLDIPPIESC
FT IVIESDGCMEGWGGICKWKKAKEDSRTTGRICAYASGKFGVIKSTIDAEIYALIKALDA
FT FKIFYLDKGHLIVRTDCQAIVTFYNKTNTHKPSRIRWITFLDYITGLGVSVTIEHIDGK
FT DNHLADTLSRLVWSQFPIEPPEEEPLKSQQLNYWEQVTHTAWPMMASCSNEGIPLHMAP
FT SPWQLNMPSPDSSIRSRKKLPRKRSTHYETYKGSYITSATTCQALQQGTTGRLTDSH"
FT CDS 6455. .6847
FT /codon_start=1
FT /product="hypothetical protein"
FT /note="ORFY"
FT /protein_id="AFM82589.1"
FT /translation="MEPVPDRTTGRRAAEIPATQLLGASYPYSLAYDGLLQQRRDTITH
FT GTLTMATEHAISRQLYQIKEEAAKKALNALRDLQGILHHERNHLSSSATRDNWASDRLP
FT LTRQLSNELDQHVTAINGIIESMVQP"
XX
SQ Sequence 7203 BP; 2469 A; 1486 C; 1663 G; 1585 T; 0 other;
jn606110 Length: 7203 02-JUL-2012 Type: N Check: 843 ..
1 tggtatcaga gcaaggtttg aaaatggtca tgtccggcta aaaccctaag
51 gttaggaaaa gggaaagagt gaggctgtcg ttagagttta aacaccggtc
101 ctaagatact gttccgacct ccactagaga gagaccaaac ccgttggaag
151 tttgctgttt taaaagaaaa aggcgtaacc ctaaagagta cctagagaga
201 gggaagaaag gggagaagat gatcttttga aaacagaaaa tcaagactat
251 tcccgttatg ctctacagtt gcagcgaaag ctgatcttct gtatcagaaa
301 ggaagaaaac ttggttaatg tctagccgtt gggagaatag tatccaagaa
351 tggtatgaaa agtctcacac agccaatctc gagtacctag acctagcctc
401 tgttagtaaa gtgaccaaca accagattgc tcataacctt gcagtaacct
451 ttgataggtt aaatttagga aaccgtgttt tcatcaaaaa cctaaaacaa
501 attcaagagt ctttagttga agtaaacact aggatcgaca ccctagaagt
551 aggcttaaga aggctaacca aacagcttaa agaaaacaaa cctttaaccg
601 agcctgaagt ccgtcggtta gtaggagaga ttgcacagca acccaagatc
651 gttgaggaac aagctcttaa gatctctcag gagcttgaac agaagcttgc
701 agaagttgaa aaacttcttc gcaatcttgg ccttgtaatt ggtcaatgac
751 tgatagcccc agctatcaac aagctctgaa ggaagctgag aaggttgacc
801 caccagcact tgggttaaca actactgaag gagtaaccgc actcaacggg
851 ttgaggacgg ttataaagca aaataatttg cagatctgct tactggcaga
901 tatagcagac aagcttgctg atcttctgac tgagcagaag aaatcaagga
951 aggaaaaggc gaaggaagtc gctattccag aagatctcat atccaaactc
1001 caaggattat ccatccagga gagaggagac gagaaagtaa caagaagaaa
1051 ggagactaaa ggaaacctct acggtttcaa agatccttac aagatcttag
1101 cagcagaagt tgcaaagatc actccaaagc ctcctacaac agagaaagag
1151 gatgagtcaa actagaactc atcagatgcc tagtgtcacc actacggtga
1201 atgaacaagg agaaggtcct ctctttgagg atcaagtcag aaattaccgg
1251 agaaaccaaa gacgtctatt caacttaagg aaaaaggcca gaagagcaca
1301 aaaggcttta acagggtcca gatctagaca ccaagagacc cttgaacaag
1351 aaatagaccc tcaggttacc ctgagactgt ccatgcagga aagggcacga
1401 ctagtaccag ctgaggtact gtacagatca aggagagaca cagtgcacca
1451 ccgtgtctat acgcatagat cagaggaatc tatcctatgc gtcggaggaa
1501 atcaagtcga caggacgttt atacaaccat ccagtctaga gagactacaa
1551 agaacgggaa tgtcctttat acatattggc atcctgcaag ttaggatcca
1601 gatcctgcat cgacaagaag aaggaacaat ggccttagtg gttttccgtg
1651 acaacagatg ggctggagat caagccatct ttgcacaaat ggaagttgac
1701 ctgaccaaag gcagccaatt ggtgttcgtg gtacctgata ccatgatgac
1751 cattggagat tttgctagaa acgtgcaact atctatccta acaaggggat
1801 atgataactg gcagaatgga gaggccaatc tactagtaac cagaagcatg
1851 acagggagac tgtcaaatac accaaacgta gccttcgcat gccagatagc
1901 aagtgctaca gactacctgg ccagtcacgg tgtgaaagca atagcaggga
1951 agaaagtaaa tctgcaacaa ctaagaaacc aacagtgggt tctacgaccc
2001 ccacaagcag atgtactacc aatgcaacca aggtcagtcg agacaagaaa
2051 cctgattgat ggaagcatat ccatcagatt ccacgattat gaggtagctc
2101 cttcaacatc aggacctcat tacaatgaaa atgacgagga agtggaatca
2151 gaatcagagg cagagatcag agagcataca gttgcagtct ggataattgg
2201 agaagaagaa tatccagatg ataatggaag aattaaagtc tgggaagaat
2251 ccagtaatgg caacggaaga ttcttcagat attacacacc tccatcagta
2301 tccaatgaac ctattatcgc cacaggctgg gacgatgatg aggatgatga
2351 ttatgattat gacccaaggt gggatactaa tctagaaagt gaaggtgaag
2401 aaccagacga gcctctgagg agtgaagagg atgaagaaga agaagtacag
2451 gatgaacctg tatggcacca agaagaagaa gaagaagaag aagaagaaga
2501 agaagaagaa gaagaagaag aagacgagta tgaccctaat acatacatgg
2551 catacttgca gaaggaagaa gatgactgga cagaaatcat cgccagtctt
2601 aacccagaaa tggagtatcc acagagaagg acagaagtag cggagactgt
2651 tttctcagaa atagtagatt acaccccacc aggagatacg ttgatgacac
2701 cagtaggata ccctcctgct tcatcatcaa gatcaacggt cacaactcct
2751 agtagaccac cgctatacga aggaaggata ccaagtgcat caagggtcct
2801 cagaagagat gactacacag agtggtggca actgccatca tcacaaggga
2851 ccacaggagc actgtttgtg atgccaaagc aaattgggct attccacgat
2901 gttttctcaa gatgggagtc cattacaaag aactatgttt cggcccaagg
2951 cattactgac ccaacagaga aaatggaatt cattgaaaat ctgcttggag
3001 aaacggagaa acttacctgg atccaatgga gaatgaggta tgaagctgaa
3051 tatcaacagc tgctaacttt agcagaaggg agacaaggga ctcagaatat
3101 tctgtctcag ataaagagag tcttctcact tgaagaccca gcttcaggat
3151 ccaccagaat ccaagactct gcttacagag atttggaaag attgacttgc
3201 cacaacatca aggacatagt ccagtttctg aatgactatg gaagattggc
3251 agctaaaagt ggaagactgt tcattggaac agagctgagt gaaaaacttt
3301 ggatgaagat gccaccggag ttaggtcaca gaatgaggga agcgttccag
3351 aaggaatatg aaggcaatga agtaggagta tttcctcgaa tactatttgc
3401 ctatcgttac ctggaacaag aatgcaaaga cgctgctttc aaaagaagtt
3451 tgaagtccct tagcttttgc aaagatatgc ctttaacagg ttattatgac
3501 aaaagctcca gatatgggat gcggagatcc aagacataca aaggaaaacc
3551 tcatgcgtct catgcaagaa ttgaaaagag aaagcatcta gtaagaaaca
3601 agaggtgcaa gtgctacctc cgtggagatg aaggccattt cgcaagggaa
3651 tgtcccaata ataaaaggga tgttaaaaga gtggcaatat ttgaaggcat
3701 caacctccca gatgactatg agatagtttc agtggaagag ggagaggaag
3751 actcagacgc tatctatagc ttgtctgaaa atgaagaaga acttcaggat
3801 gaagtacttc atgaaaaagt cttcatgata cgagaaggag atcaatccta
3851 ttggatggga aaagcaaatc actggacagc tatggtcaga gtcagttatc
3901 aacagtatca ctgtccacat cagtgggagc acaacaaaga gattccaata
3951 atggccctta tcaactgcca tttttgtaag cagcccacaa atcttagagg
4001 aagagtgcac tgccccacat gccagctcac cagctgttat atgtgtgcac
4051 caatctattg tgatgtccaa gtccaacaac agccaaagac ccccatacca
4101 ttcagcccaa atgcattgct acagcagcag gccgcctata tccgttggct
4151 cgaatctgaa aataaaagac ttaatgagct cgtggaattc tacaaaaggc
4201 tcttggacgg aggatccaga ctccaacagg agttggaagc tgatcaaaaa
4251 gaattggagg agttggaagc tgatcgaaaa gaattggagg cccatgacaa
4301 aggaaaaagg gtccaattca cagaagaaga aaaggtccag ctcaccgaag
4351 aattagagga aatccatatg gcctatcttg aggaggacac aatcacacgt
4401 gtcgtgggtc atactacaga aggaccttca gaagccaaga aagtggtgaa
4451 aaagagcaat atgctatata acctcgaggt tatcctaatc atacctgagg
4501 ttggaaaacc actaaaagtc aaagcgatat tggatacagg agcaactaca
4551 tgctgtatca atatcaattc tgttccaaag atggctatcg aacagaatac
4601 attcctggtg caatttcggg gaattaattc tacacaatcc gttgataaga
4651 agctccgtta tggacgaatg actattagcg gacaccaatt cagatttccc
4701 tattgctatg cattcccact atcccttggc gatggtatcg aaatgatact
4751 aggttgcaat tttatccgcg gaatgtacgg tggacttaga atcgaaggct
4801 ctacaatcac attctacaaa aatgtcacta cgatccaaac taagttagcc
4851 gctggaatgg ttggtggaac aacctctttt tatccggggg aaggaggagg
4901 cagtcacttt gaattcaaag cctcagaaga atcggatgat gacgcggaga
4951 tagatttcga aatccaccag cagatcataa gccatgcagt agcccaagct
5001 acaacaccaa aactgagccc aaaactgaag catctgatgg gccagctgaa
5051 agatcaaggc tttattgggg aaaaccctat gaagcactgg gcttctaaca
5101 aaatccactg caagctggat atcaagaatc cagacttaat tattgaagac
5151 aagcccatta aacatctgac gcctgcgatg gagaaacagt tcgcaaagca
5201 catcaaggct ctccttgaca ttggcgtgat aaggcccagt aaatcaagac
5251 acagaacaac ggcctttatc gtggaatcag gcaccaccat tgacccaaag
5301 acgaagaaga caatccatgg gaaggagaga atggtgttca actacaaacg
5351 cctgaatgat aacacagaaa aggatcagta ctcactgcct gggattcaca
5401 ctatcctgaa gagagttggg aacaagaaga tcttcagtaa gttcgactta
5451 aagtcaggtt tccaccaagt agcaatggca gaagagtcaa ttccttggac
5501 cgccttctgg gtcccgcaag ggttatacga atggctagct atgccatttg
5551 gtctgaagaa cgcccctgca atcttccaaa gaaaaatgga tgtctgtttt
5601 aagggaacag aagacttcat tgcagtctat attgatgaca tcctcgtgtt
5651 cagtgaaaca atggaggaac acgaaaatca catcagcaga atgctcgaga
5701 tatgtaaaag acatgggcta gttcttagtc ctaataaaat gagcattgcc
5751 caagaggaga ttgagttctt agggaccata atctccaaag gaagaatgaa
5801 actccaggcc catgtgatca agaagattgt aagcaaggcc caaatggagt
5851 tatccacaac aaagggttta agatctttcc ttggcctgtt aaattatgcc
5901 aggatctaca tcccaaattt gggaaggaaa ttaagcccat tatatgcaaa
5951 ggtcagccca actggggaaa agaagcttaa caagcaagat tggaatctca
6001 tcaatgagat aaagcaaatg gtccaaaagc tacctgacct agacattcca
6051 ccaatagaaa gctgcatagt cattgaaagt gacggatgca tggaaggatg
6101 gggtggaatt tgcaaatgga aaaaggcaaa agaggattcg aggacaacag
6151 ggagaatctg cgcgtacgct agtggaaagt ttggcgtaat caaaagcact
6201 attgacgccg agatttacgc cttgattaag gcattggatg cttttaaaat
6251 cttttatctg gacaaagggc atcttatcgt acgcaccgac tgtcaggcta
6301 ttgtcacctt ttacaataag accaataccc acaaaccatc caggatacgc
6351 tggattactt ttctggacta tataactggg ttaggtgttt cagtgacgat
6401 agaacacatc gacggaaaag acaatcacct agctgacact ctaagcagac
6451 tagtatggag ccagttcccg atcgaaccac cggaagaaga gccgctgaaa
6501 tcccagcaac tcaattactg ggagcaagtt acccatacag cttggcctat
6551 gatggcctcc tgcagcaacg aagggatacc attacacatg gcaccctcac
6601 catggcaact gaacatgcca tctcccgaca gctctatcag atcaaggaag
6651 aagctgccaa gaaagcgctc aacgcactac gagacctaca agggatccta
6701 catcacgagc gcaaccacct gtcaagctct gcaacaaggg acaactgggc
6751 gtctgacaga ctcccactaa cccgccagct gtccaatgaa ctagaccagc
6801 atgtgaccgc aatcaacggc attattgaaa gtatggtcca gccttagttt
6851 tggacagtag tatgcaataa ttaaagtagt gtttgcttta tgctttgtga
6901 gctgtatcac agctgtatta ctactttatg agttgtatcg cactatggaa
6951 ggacatgagt gattgacgat ggggcccaaa gagcacccgg atcaccaaat
7001 ccttttccta taagtagcga agtgtgtaag cttagacctt agaccaaaaa
7051 aaagagtaag aactactcta gctgaatcta agtgttgtga gtgtttgtaa
7101 gttctaagtt tttaaagaga aataaatagt ccgctttgtg cttatctatt
7151 tgtttccgcc tggagattta aacagttttt gtttcttccg ccgtttttaa
7201 ttc