Sequence of DPV Pepper golden mosaic virus
Pepper golden mosaic virus isolate 07-3696 coat protein (AV1) gene, partial cds; replication enhancer protein (AC3) and transcriptional activator protein (AC2) genes, complete cds; and replication associated protein (AC1) gene, partial cds.
ACC No: JN609292
Dated: 2012-02-01 | Length: 1160 | CRC: 1062217984
ID JN609292; SV 1; linear; genomic DNA; STD; VRL; 1160 BP.
XX
AC JN609292;
XX
DT 01-FEB-2012 (Rel. 111, Created)
DT 01-FEB-2012 (Rel. 111, Last updated, Version 1)
XX
DE Pepper golden mosaic virus isolate 07-3696 coat protein (AV1) gene, partial
DE cds; replication enhancer protein (AC3) and transcriptional activator
DE protein (AC2) genes, complete cds; and replication associated protein (AC1)
DE gene, partial cds.
XX
KW .
XX
OS Pepper golden mosaic virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-1160
RA Castro R., Hammond R., Rojas M., Gilbertson R., Hernandez E., Mora F.,
RA Ramirez P.;
RT "Distribution and incidence of viruses transmitted by whiteflies
RT (Hemiptera: Aleyrodidae) in vegetables of economic importance, Cartago,
RT Costa Rica";
RL Unpublished.
XX
RN [2]
RP 1-1160
RA Castro R., Moreira L., Rojas M., Gilbertson R., Hernandez E., Mora F.,
RA Ramirez P.;
RT "New host range of Squash yellow mild mottle virus (SYMMoV) and Pepper
RT golden mosaic virus (PepGMV) in Costa Rica";
RL Unpublished.
XX
RN [3]
RP 1-1160
RA Castro R.;
RT ;
RL Submitted (23-AUG-2011) to the INSDC.
RL Centro de Investigacion en Biologia Celular y Molecular, Universidad de
RL Costa Rica, Ciudad de la Investigacion, San Pedro de Montes de Oca, San
RL Jose 11501-2060, Costa Rica
XX
FH Key Location/Qualifiers
FH
FT source 1. .1160
FT /organism="Pepper golden mosaic virus"
FT /host="Erythrina sp."
FT /isolate="07-3696"
FT /mol_type="genomic DNA"
FT /country="Costa Rica:Cartago Province"
FT /collection_date="2007"
FT /clone="Po3696"
FT /PCR_primers="fwd_name: pav1v722, fwd_seq:
FT atatctgcagggnaarathtggatgga, rev_name: pac1c1960, rev_seq:
FT tggactgcagacnggnaaracnatgtgggc"
FT /db_xref="taxon:223301"
FT gene <1. .384
FT /gene="AV1"
FT CDS <1. .381
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="AEY94446.1"
FT /translation="HVGHIVFCLQSTSRPYSTSMDFGQVFNMYDNEPSTATVKNDLRDR
FT YQVMHRFSAKVTGGQYASNEQALVRRFWKVNNYVVYNHQEAGKYENHTENALLLYMACT
FT HASNPVYATLKIRIYFYDSITN"
FT gene complement(378. .776)
FT /gene="AC3"
FT CDS complement(378. .776)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /protein_id="AEY94449.1"
FT /translation="MDSRTGESITVRQAENSVFIWEVPNPLFFRIHRVEAPLDTRTRIY
FT HIEVRFNHNLRRQLALHKAFLHFQVWTTSMTASGTTYLNRFKFRVMLYLHRLGAIGINN
FT VIRAVRFATDKSYVNYVLEHHEIKFKLY"
FT gene complement(523. .912)
FT /gene="AC2"
FT CDS complement(523. .912)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcriptional activator protein"
FT /protein_id="AEY94448.1"
FT /translation="MLNSSSSTLPSIKAQHRIAKKRPVRRRRIDLNCGCSIFLHINCAN
FT NGFTHRGEHHCASGREFRFYLGGSKSPIFQDTPSRGPVGHQNQDIPHRSPVQPQPTPTV
FT GSPQGIPSFPSLDDFDDSFWDDIFK"
FT gene complement(854. .>1160)
FT /gene="AC1"
FT CDS complement(854. .>1160)
FT /codon_start=2
FT /gene="AC1"
FT /product="replication associated protein"
FT /protein_id="AEY94447.1"
FT /translation="VYSNDVEYNVIDDITPHYLKLKHWKELIGAQRDWQSNCKYGKPVQ
FT IKGGIPSIVLCNPGEGSSYIAFLNKEENAPLRAWTQKNAQFVILHAPLYKSTAQDS"
XX
SQ Sequence 1160 BP; 300 A; 249 C; 272 G; 339 T; 0 other;
jn609292 Length: 1160 01-FEB-2012 Type: N Check: 6543 ..
1 catgtgggcc acatcgtctt ctgtctgcag tcaaccagta gaccatatag
51 tacctctatg gatttcgggc aggtgttcaa catgtatgac aacgagccca
101 gtacagccac tgtaaagaac gatctgcgtg atcgttacca agttatgcac
151 aggttctcgg ctaaggttac aggtggacag tatgccagca acgagcaggc
201 gttggttagg cgattttgga aggtgaacaa ctacgttgtc tacaaccatc
251 aggaagctgg caaatacgag aatcatactg agaacgccct cttattgtat
301 atggcatgta cgcatgcatc taaccctgtg tacgcgacat tgaaaattcg
351 aatctatttc tatgattcga taacaaatta ataaagtttg aattttattt
401 catgatgctc aagtacataa tttacatagg atttgtccgt cgcaaagcga
451 acagctcgaa ttacattgtt tatgcctatg gcccctagtc tatgtaaata
501 caacatgacg cgaaatttga atctatttaa atatgtcgtc ccagaagctg
551 tcatcgaagt cgtccagact tggaaatgaa ggaatgcctt gtggagagcc
601 aactgtcggc gtaggttgtg gttgaaccgg acttcgatgt ggtatatcct
651 ggttctggtg tccaacgggg cctcgactcg gtgtatcctg aaaaataggg
701 gatttggaac ctcccaaata aaaacggaat tctctgcctg acgcacagtg
751 atgctctccc cggtgcgtga atccattatt tgcgcagttg atgtggagga
801 agatagagca gccgcagttt aggtctattc gtcgtctgcg aacaggtctc
851 tttttagcta tcctgtgctg tgcttttata gaggggagcg tggaggatga
901 cgaattgagc atttttttgt gtccacgctc tcaaaggtgc attttcctct
951 ttgttgagga aagctatata gctgctacct tcccctggat tgcacagcac
1001 aattgatggt atcccgcctt taatttgaac tggctttccg tatttacagt
1051 tggactgcca gtccctttgg gccccaataa gctctttcca gtgtttcaac
1101 tttagataat ggggcgtgat atcatcaatg acgttatact ccacatcgtt
1151 tgaatagacc