Sequence of DPV Squash leaf curl China virus
Squash leaf curl China virus isolate SLCCNV-[Pum:IARI] segment DNA-B, complete sequence.
ACC No: JN624306
Dated: 2012-01-16 | Length: 2704 | CRC: -246339619
ID JN624306; SV 1; circular; genomic DNA; STD; VRL; 2704 BP.
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AC JN624306;
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DT 16-JAN-2012 (Rel. 111, Created)
DT 16-JAN-2012 (Rel. 111, Last updated, Version 1)
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DE Squash leaf curl China virus isolate SLCCNV-[Pum:IARI] segment DNA-B,
DE complete sequence.
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KW .
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OS Squash leaf curl China virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2704
RA Phaneendra C., Mandal B., Rao K.R.S.S., Jain R.K.;
RT ;
RL Submitted (26-AUG-2011) to the INSDC.
RL Plant Pathology, Indian Agricultural Research Institute, Pusa Campus, New
RL Delhi, Delhi 110012, India
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FH Key Location/Qualifiers
FH
FT source 1. .2704
FT /organism="Squash leaf curl China virus"
FT /segment="DNA-B"
FT /host="pumpkin"
FT /isolate="SLCCNV-[Pum:IARI]"
FT /mol_type="genomic DNA"
FT /country="India"
FT /isolation_source="plant showing yellow vein mosaic
FT symptoms in the experimental field of IARI"
FT /collection_date="Jun-2010"
FT /db_xref="taxon:223323"
FT CDS 469. .1275
FT /codon_start=1
FT /product="nuclear shuttle protein"
FT /note="BV1"
FT /protein_id="AEX55206.1"
FT /translation="MAYTTPYTAARRYSSSTNRFSNANKKLKFWKSRKYHGLMRYRNVN
FT STGRIPTDLFGDPISRQYTRKEICETQQGSEYVLQNNRYMTSYVTYPAKTRTGTDNRVR
FT SYIKLTGLTMSGTFGIRCSDLMTDVDQPTGLYGVVSIVIVRDKSPKIYSTAQPLMPFVD
FT LFGSVNSCRGALKVAERHRERFVVLNQSSILINTPHCTAMKKFSVRNCIPRTYSTWVTF
FT KDEEEDSSTGLYSNTLRNAILIYYVWLSDVSSQLDMYSNVMLNYIG"
FT CDS complement(1329. .2174)
FT /codon_start=1
FT /product="movement protein"
FT /note="BC1"
FT /protein_id="AEX55207.1"
FT /translation="MSIRNDNMGLGVGGYIESDRVEYALTNDAAEVTLTFPSMFEQKIS
FT QLRNRCMKIDHVLLEYRSQVPINAVGHVVIEIHDMRLTEGDTKQAEFTIPIKCNCNLHY
FT YSSTYFSVKDKNPWRVEYRVENTNVVNGVHFCKMLGKLKLSSAKHSTDVEFRAPRIEIQ
FT SKEFTVNDIDFWSVGSKPQTRRLVDGSRLMGHSSRSLRVPHLAIGPNESWASRSEIGLG
FT SVTSRPYKNLSGLDESAIDPGPSASQVGSITRDEITEIITKTVEQCMKSNVNAPLTKGV
FT "
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SQ Sequence 2704 BP; 756 A; 558 C; 516 G; 874 T; 0 other;
jn624306 Length: 2704 16-JAN-2012 Type: N Check: 6198 ..
1 accgaaaggc cgcgcaattt tttttcctca aatctggccg ttgatttaaa
51 ctaatgcgca acgcgatgaa caacacgtgt cctatgacac atcctttatt
101 aaagtaaagg attgtacgat ttcataatcc gcacatggtg gaacccattg
151 tctagatatg caattctagg aaattgccta agtggtcccg atataaaaag
201 ctgttgttta tattgcgttt gaagtgtggt cccggtatta attcataatg
251 cattcgttac cgttgctcta tcatatctag tgtattttga acggctgaga
301 tcaaaatatg aatttaaccc tcatctcatc gtccgctttg tctacatgtt
351 tgtaatttga tcaaacatgt tttaccgtcc ccattttttt gcaaacattg
401 tactgaatta tatcattata taattcactt tcgtgcatag tcgttgccac
451 ctcttttgtt tgatccaaat ggcttatact acaccttata ctgctgcaag
501 acgatattca tcgtcaacaa acagattttc caacgcaaac aagaaattga
551 aattttggaa gtctcgaaag taccatggtt tgatgcgtta tcggaatgtg
601 aattccacag gcaggatccc gactgacctg ttcggtgatc ctatctccag
651 acaatatact cgtaaggaaa tttgtgaaac tcaacaggga tctgaatatg
701 ttctccagaa caatcgttat atgacatcgt atgtcactta tcctgctaaa
751 acccgaactg gaacggataa cagggtccgt tcgtatatca agctcacagg
801 tcttaccatg tccggaacgt tcggcattcg atgttctgat ttgatgacgg
851 atgtcgatca acccactgga ctctatggcg tcgtgtccat tgttatcgtc
901 cgggataaat caccgaagat ttattcaact gcacaaccac ttatgccatt
951 tgttgattta tttggttcgg ttaattcctg tcgtggagct cttaaggtgg
1001 cagaacgcca ccgagaaagg tttgtggtgc tgaatcaatc ttccatattg
1051 ataaacactc ctcattgcac cgcaatgaag aaattctcag ttcgtaactg
1101 catcccgcgc acctactcta cctgggtcac tttcaaggat gaagaagagg
1151 atagttccac cggactatac tcaaacacgc ttcgaaatgc aattctcata
1201 tattatgtgt ggttaagcga tgtatcttct caacttgata tgtacagcaa
1251 tgtaatgtta aattacattg gttagtgcat tcacgatgct gaaaataact
1301 tccattaata aattttgcaa taaatttatc atacgccttt agttagtggg
1351 gcgtttacat ttgatttcat acattgttct accgttttag ttattatttc
1401 agttatctcg tccctcgtaa tgcttcccac ttgtgatgcc gatggaccag
1451 gatctattgc ggattcatct aatccgctga ggttcttata tggtctactg
1501 gtaacagaac ccagcccaat ttccgatcta ctagcccacg attcgtttgg
1551 accaatcgca agatgtggga cgcgtaacga tcttgaactg tgacccatta
1601 gtcttgatcc atctacaagc cgtcttgttt gtggtttgga tcccactgac
1651 cagaaatcta tgtcgttaac ggtgaattct ttgctctgta tctctattct
1701 tggtgctcgg aattcgacgt cagtcgaatg tttggccgag gatagtttta
1751 atttaccgag catcttacaa aaatgtactc catttactac gttcgtgttc
1801 tccaccctgt attcaactct ccaaggattt ttatccttaa cggagaagta
1851 tgttgatgag tagtagtgca gattgcagtt gcattttatc ggaattgtga
1901 attctgcttg ttttgtgtct ccctctgtca atctcatatc gtgaatttca
1951 ataaccacat gcccgactgc attaattggt acttgactgc gatattcaag
2001 tagaacgtga tcaattttca tgcatctgtt tctcaattga ctgattttct
2051 gttcgaacat ggaagggaac gtcagagtga cctccgcagc gtcgtttgtg
2101 agagcgtact ctacgcgatc cgattctatg taccctccaa caccaagacc
2151 catgttatca tttcttatgg acattttggc tgcgcagcag aattggctcc
2201 gcaggtgaat aaactataaa atggatgcta aagaaggttt ggcaaacgaa
2251 caaaggacag tttgaaatga aacacaggac aactgtgttt tcaaggaaca
2301 tctaacacct atttataacc gttcaattat tgtgttactt gctccaaatg
2351 agtaagagaa ttgaaatagt gaccgacgat gtatcatatt tattattttg
2401 aacggctgag atcaaaatat gaactacttt tatattggac cattatcata
2451 aagcccaatt tgtcaaaatt ggaaagtgat atatatttct ttgggctatt
2501 cagaaaatag cccactaaat agttatagag catttcatca aaataaggac
2551 accgttttaa gcttatttat atggaaagtt agagagaagt cgcacattct
2601 ctctctagac accgaatcgg agtctctcca aaactatggt atattggggt
2651 atggagtctt atatatacta tagagaactt catagcggcc tttcgtttaa
2701 tatt