Sequence of DPV Pepper leaf curl Bangladesh virus
Pepper leaf curl Bangladesh virus-India isolate Chhapra segment DNA-A, complete sequence.
ACC No: JN663853
Dated: 2013-01-02 | Length: 2760 | CRC: -1102151230
ID JN663853; SV 1; circular; genomic DNA; STD; VRL; 2760 BP.
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AC JN663853;
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DT 02-JAN-2013 (Rel. 115, Created)
DT 02-JAN-2013 (Rel. 115, Last updated, Version 1)
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DE Pepper leaf curl Bangladesh virus-India isolate Chhapra segment DNA-A,
DE complete sequence.
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KW .
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OS Pepper leaf curl Bangladesh virus-India
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2760
RA Vinothkumar R., Singh A.K., Chakraborty S.;
RT "Molecular diversity of begomoviruses causing leaf curl disease of chillies
RT in India";
RL Unpublished.
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RN [2]
RP 1-2760
RA Vinothkumar R., Singh A.K., Chakraborty S.;
RT ;
RL Submitted (09-SEP-2011) to the INSDC.
RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru
RL University, New Mehrauli Road, New Delhi, Delhi 110067, India
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FH Key Location/Qualifiers
FH
FT source 1. .2760
FT /organism="Pepper leaf curl Bangladesh virus-India"
FT /segment="DNA-A"
FT /host="chilli"
FT /isolate="Chhapra"
FT /mol_type="genomic DNA"
FT /country="India"
FT /collected_by="A K Singh"
FT /collection_date="13-Jan-2010"
FT /clone="Xba I-1"
FT /db_xref="taxon:1000670"
FT gene 147. .503
FT /gene="AV2"
FT CDS 147. .503
FT /codon_start=1
FT /gene="AV2"
FT /product="pre-coat protein"
FT /protein_id="AGA60267.1"
FT /translation="MWDPLVNDFPESVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL
FT ISVIRARNYVEATSRYNHFHARLEGTPPSQLRQPIYQPCCCPHCPRHQSKSMGQQAHEQ
FT EAQDVQDVQKPRCS"
FT gene 307. .1077
FT /gene="AV1"
FT CDS 307. .1077
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="AGA60266.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYTSRAAAPIVRVTKAKAWA
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT gene complement(1080. .1484)
FT /gene="AC3"
FT CDS complement(1080. .1484)
FT /codon_start=1
FT /gene="AC3"
FT /product="REn"
FT /protein_id="AGA60270.1"
FT /translation="MDSRTGEPITAAQAENSVLIWEITNPLYFKIIEHHHRPFLRNHDI
FT ITVQVRFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVLQFLNNFAVISINN
FT VLRAVDHVLWNVLAQTIHVQSSNIIKFNIY"
FT gene complement(1225. .1629)
FT /gene="AC2"
FT CDS complement(1225. .1629)
FT /codon_start=1
FT /gene="AC2"
FT /product="TrAP"
FT /protein_id="AGA60269.1"
FT /translation="MRPSSPSRAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR
FT CHGYGFTHRGTHHCSSSREFRAYLGDNKSPVFQDNRAPPPAIPEEPRHHNSPSTVQSQP
FT EESFGDTQMFSNLPNLDDLTASDWSFLKGI"
FT gene complement(1532. .2617)
FT /gene="AC1"
FT CDS complement(1532. .2617)
FT /codon_start=1
FT /gene="AC1"
FT /product="REP"
FT /protein_id="AGA60268.1"
FT /translation="MTRPHQFQVKAKNIFLTYPKCPIPKEQMLELLKNISCPSDKLFIR
FT VSQEKHQDGSLHIHALIQFKGKSQFRNPRHFDVTHPNNATQFHPNFQGAKSSSDVKSYI
FT EKDGDYIDWGKFQIDGRSARGGQQTANDAAAEALNAGSAEAALAIIREKLPKDFIFQYH
FT NLKCNLDRIFTPPVEVYVSPFSSSSFDQVPEELEEWAAENVLGAAARPLRPISIVLEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFITLEGPL
FT YSGSNQSAAQASQEGDQASSR"
FT gene complement(2203. .2460)
FT /gene="AC4"
FT CDS complement(2203. .2460)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4"
FT /protein_id="AGA60271.1"
FT /translation="MGACISMPSSSSKVNPSSETPDISMSLTLITPPNSTQTSRELSPV
FT PMSSPTSRRTVITSTGVSFRSMDDLLEEVNRQLMMLQQRP"
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SQ Sequence 2760 BP; 734 A; 581 C; 650 G; 795 T; 0 other;
jn663853 Length: 2760 02-JAN-2013 Type: N Check: 1352 ..
1 accggatggc cgcgattttt ttccaggtgg gccccacaac acacgtgctg
51 acaaggacta gtgaaccaat tagaaacgcc cctcaaagct taattattca
101 ttggtccctt atataaactt ggtccccaag tattgcacac ataccaatgt
151 gggatccgtt agtaaacgac tttcctgaaa gcgttcacgg ttttaggtgt
201 atgctagccg ttaaatatct tcagctagta gaaaagacgt attctccaga
251 cactctcggt tacgatttaa tccgggattt gatctcggtt attagggcta
301 gaaattatgt cgaagcgacc agcagatata atcatttcca cgcccgcctc
351 gaaggtacgc cgccgtctca acttcgacag cccatatacc agccgtgctg
401 ctgcccccat tgtccgcgtc accaaagcaa aagcatgggc caacaggccc
451 atgaacagga agcccaggat gtacaggatg tacagaagcc cagatgttcc
501 tagaggatgt gaaggcccgt gtaaggtcca gtcctttgag tccagacatg
551 atatccagca cattggtaaa gtcatgtgtg ttagtgatgt tactcgtggt
601 actggtctga cccacagagt tggtaaaagg ttttgtgtaa aatcagtcta
651 tgttctgggc aagatttgga tggatgagaa tataaagact aagaatcaca
701 cgaatagtgt tatgtttttc cttgttaggg atcgtaggcc cgttgataag
751 ccccaagatt ttggtgaggt ttttaacatg tttgacaatg agcccagtac
801 ggcaacggtc aagaacgtgc atcgtgacag gtatcaggtg ctgaggaagt
851 ggcatgcaac cgttacaggt ggtcaatacg catcgaagga gcaagctctc
901 gtgaagaagt ttattagggt taataattat gttgtgtata accagcaaga
951 ggctggcaag tatgaaaacc atactgagaa tgcattgatg ttgtacatgg
1001 catgtactca tgcctcgaac cctgtgtatg ctacgttgaa gatacggatc
1051 tatttttacg actctgtaac caactgaaat taataaatat tgaattttat
1101 tatgtttgaa ctctgtacat gaattgtttg tgctaataca ttccataata
1151 catgatcgac agctctaagt acattgttta tactaattac agcaaaatta
1201 tttaaaaact gcaacacttg ggtcctaaat acccttaaga aatgaccagt
1251 ctgaggctgt aaggtcgtcc agattcggaa ggttagaaaa catttgtgta
1301 tccccaaagc tttcctcagg ttgtgattga accgtacttg gactgttatg
1351 atgtcgtggt tcctcaggaa tggccggtgg tggtgctcga ttatcttgaa
1401 atacagggga tttgttatct cccagataag cacggaattc tctgcttgag
1451 ctgcagtgat gggttcccct gtgcgtgaat ccatagccgt ggcagcgtaa
1501 tgcgatgaaa tatgaacagc cgcagtctag gtcaacgcga cgacgcctgg
1551 tccccttctt ggctagcctg tgctgcactt tgattggaac ctgagtagag
1601 tgggccctcg agggtgatga aggtcgcatt ctttaaagcc caatttttga
1651 gtgcggaatt cttctcttca tccaagaact ctttatagct ggaattgggt
1701 cctggattgc agaggaagat agcgggaatt ccacctttaa tttgaactgg
1751 ctttccgtat tttgtatttg attgccagtc cctttgggcc cccatgaatt
1801 ccttaaagtg ctttaggtaa tgcgggtcga cgtcatcaat gacgttgtac
1851 caggcgtcat tactgtagac ctttgggcta aggtctagat gtccacacaa
1901 atagttgtgt ggacccaatg acctggccca catcgtcttc cccgtcctac
1951 tatcgccctc taacacaata cttatgggtc ttaaaggccg cgcagcggca
2001 ccgagaacat tctcggcagc ccattcttca agttcttctg gaacttgatc
2051 aaaagaagag gaagaaaaag gagaaacata aacctccaca ggaggtgtaa
2101 aaatcctatc taaattacat tttaaattat gatattggaa aataaaatct
2151 ttaggtagtt tttccctaat tattgctaac gccgcttcag ccgaacctgc
2201 attcagggcc tctgctgcag catcattagc tgtctgttga cctcctctag
2251 cagatcgtcc atcgatctga aacttacccc agtcgatgta atcaccgtcc
2301 ttctcgatgt aggacttgac atcggaactg gacttagctc cctggaagtt
2351 tgggtggaat tgggtggcgt tattagggtg agtgacatcg aaatgtctgg
2401 ggtttcggaa ctgggattta cctttgaact ggatgagggc atggatatgc
2451 aggctcccat cttggtgttt ttcctgtgag actctgataa ataatttatc
2501 agaaggacaa gaaatgtttt taagtagttc gagcatttgc tctttgggta
2551 ttgggcattt aggataagta aggaagatat ttttggcctt aacttggaat
2601 tggtgcggac gtgtcatatt gaattgggtg ctcttcaaaa ctctacggaa
2651 tggggtgctt tgggtgccta tttataccga gctcccaaat ggcatttccg
2701 taatttcggg gaaaattcca aatttttccc gctccaaaaa gcggccatcc
2751 gtataatatt