Sequence of DPV Chilli leaf curl virus
Pepper leaf curl Varanasi virus isolate Jorehat segment DNA-A, complete sequence.
ACC No: JN663861
Dated: 2013-01-02 | Length: 2750 | CRC: 38057
ID JN663861; SV 1; circular; genomic DNA; STD; VRL; 2750 BP.
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AC JN663861;
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DT 02-JAN-2013 (Rel. 115, Created)
DT 02-JAN-2013 (Rel. 115, Last updated, Version 1)
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DE Pepper leaf curl Varanasi virus isolate Jorehat segment DNA-A, complete
DE sequence.
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KW .
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OS Pepper leaf curl Varanasi virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2750
RA Vinothkumar R., Singh A.K., Chakraborty S.;
RT "Molecular diversity of begomoviruses causing leaf curl disease of chillies
RT in India";
RL Unpublished.
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RN [2]
RP 1-2750
RA Vinothkumar R., Singh A.K., Chakraborty S.;
RT ;
RL Submitted (09-SEP-2011) to the INSDC.
RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru
RL University, New Mehrauli Road, New Delhi, Delhi 110067, India
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FH Key Location/Qualifiers
FH
FT source 1. .2750
FT /organism="Pepper leaf curl Varanasi virus"
FT /segment="DNA-A"
FT /host="chilli"
FT /isolate="Jorehat"
FT /mol_type="genomic DNA"
FT /country="India"
FT /collected_by="U K Phukan"
FT /collection_date="16-Jul-2009"
FT /clone="BamH I-3"
FT /db_xref="taxon:1219878"
FT gene 142. .507
FT /gene="AV2"
FT CDS 142. .507
FT /codon_start=1
FT /gene="AV2"
FT /product="pre-coat protein"
FT /protein_id="AGA60273.1"
FT /translation="MWDPLLNEFPETVHGFRCMLAVKYLQLVENTYSPDTLGYDLIRDL
FT ITVIRAKNYVEATSRYNHFHSRLEGTPPSQLRQPICQPCCCPHCPRHKGQSMGQQAHES
FT EAQDVQDVQEPRCSKGM"
FT gene 302. .1072
FT /gene="AV1"
FT CDS 302. .1072
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="AGA60272.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWA
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPNDKPQDFGEVFNMFDNEP
FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYDNH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN"
FT gene complement(1069. .1473)
FT /gene="AC3"
FT CDS complement(1069. .1473)
FT /codon_start=1
FT /gene="AC3"
FT /product="REn"
FT /protein_id="AGA60276.1"
FT /translation="MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHNRPFFRNRDI
FT INVQIRFNQNLRKALGIHKCFLTFRIWTTLQPRTGHFLRVFRTQVLRVLNNFAVISINN
FT VIRAADHVLWNVLQHTVYVQQSYSIKFNLY"
FT gene complement(1214. .1618)
FT /gene="AC2"
FT CDS complement(1214. .1618)
FT /codon_start=1
FT /gene="AC2"
FT /product="TrAP"
FT /protein_id="AGA60275.1"
FT /translation="MRPSSPSRAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR
FT CHGYGFTHRGTHHCSSSREWRVYLGDNKSPVFQDNRAPQQAILPEPRHHQRADTVQSKP
FT EESVGDTQMFSNLPNLDDLTASDWSFLKGI"
FT gene complement(1521. .2606)
FT /gene="AC1"
FT CDS complement(1521. .2606)
FT /codon_start=1
FT /gene="AC1"
FT /product="REP"
FT /protein_id="AGA60274.1"
FT /translation="MPRAGRFNINAKNYFLTYPNCSLTKEEALSQLQNLETPVNKLFIR
FT VCRELHENREPHLHVLVQFEGKYQCTNNRFFDLISPTRSAHFHPNIQRAKSSSDVKAYV
FT EKDGDFIDFGVFQIDGRSARGGCQSANDAYAEAINSGSKSSALNILREKAPKDYVLQFH
FT NLNANLDRIFTPPLEVYVSPFSSSSFDQVPEELEEWAAENVLGAAARPLRPMSIVIEGE
FT SRTGKTIWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALRNWALKNATFITLEGPL
FT YSGSNQSAAQASQEGDQASTR"
FT gene complement(2156. .2455)
FT /gene="AC4"
FT CDS complement(2156. .2455)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4"
FT /protein_id="AGA60277.1"
FT /translation="MRIGNLIYTCSSNSRENTNAQTTDSSTLFPQPGQHISIRTFRELK
FT ALQMSKPMWRKTETSLTLEFSKSMADQLEEVANLPTTHMPRQSIQGPSLRPSIF"
XX
SQ Sequence 2750 BP; 750 A; 576 C; 635 G; 789 T; 0 other;
jn663861 Length: 2750 02-JAN-2013 Type: N Check: 6067 ..
1 accggatggc cgcgattttt ttaaccgtgg gccccaccac gcacgtgctg
51 acaaagacat gtgcaccaat taaaatcgtc cctcatagct taattatttc
101 atggtccccc tttaaacttg gttagtgcac tttcctttcc aatgtgggat
151 ccattattaa acgagttccc tgaaaccgtt cacggtttta ggtgtatgtt
201 agccgttaaa tatctgcagc tagtagaaaa tacgtattct ccagatactc
251 tggggtacga tttaatcagg gatttaatta cagttattag ggctaagaat
301 tatgtcgaag cgaccagcag atataatcat ttccactccc gcctcgaagg
351 tacgccgccg tctcaacttc gacagcccat atgccagccg tgctgctgcc
401 cccattgtcc gcgtcacaaa ggccagagca tgggccaaca ggcccatgaa
451 tcggaagccc aggatgtaca ggatgtacag gagcccagat gttccaaggg
501 gatgtgaagg cccatgtaag gtccagtcgt ttgagtctag acacgatgta
551 gttcatatag ggaaggtcat gtgtattagt gatgtcaccc gtggtactgg
601 gttaacccat agagtaggta aacgtttctg tgttaagtcc gtgtatgtat
651 tagggaagat atggatggat gagaatatca agactaagaa tcacacgaat
701 agtgtgatgt tcttccttgt acgtgatcgt cgtccaaatg ataaaccaca
751 agattttgga gaggtgttca acatgtttga caacgagcct agtactgcaa
801 ctgtgaagaa tatgcatagg gatcgttatc aggttttgag gaaatggcac
851 gcaacggtta ccggtggaca gtatgcttcg aaggaacagg cattagttaa
901 gaagttcgtt agggttaaca attatgttgt gtataaccag caggaagctg
951 ggaaatatga caatcacaca gagaatgctc tgatgttgta catggcatgt
1001 acccatgcct ctaaccctgt gtatgctact ttgaagatac ggatctattt
1051 ctacgattca gtatcgaatt aataaagatt gaattttatt gaatacgact
1101 gttgtacata tacagtgtgt tgtaatacat tccataatac atgatcagct
1151 gccctaatta cattatttat ggaaattaca gcaaaattat ttaaaacacg
1201 caacacttgg gtcctaaata cccttaagaa atgaccagtc cgaggctgta
1251 aggtcgtcca gattcggaag gttagaaaac atttgtgtat ccccaacgct
1301 ttcctcaggt tttgattgaa ccgtatctgc acgttgatga tgtctcggtt
1351 ccggaagaat ggcctgttgt ggtgctcggt tatcttgaaa tacaggggat
1401 ttgttatctc ccagataaac acgccattct ctgcttgagc tgcagtgatg
1451 ggttcccctg tgcgtgaatc catagccgtg gcagcgtaat gcgatgaaat
1501 aggagcagcc gcaatctagg tcaacgcgtc gacgcctggt ccccttcttg
1551 gctagcctgt gctgcacttt gattggaacc tgagtagagt gggccctcga
1601 gggtgatgaa ggtcgcattc tttaaagccc aatttctgag tgcgctattt
1651 ttctcttcat ccaagaactc tttatagctg gaattgggtc ctggattgca
1701 gaggaagata gcgggaattc cacctttaat ttgaactggc tttccgtatt
1751 tagtgtttga ttgccagtcc ctttgggccc ccatgaattc tttaaagtgc
1801 tttaggtagt ggggatcgac gtcatcaatg acgttgtacc aggcgtcatt
1851 actatagacc tttgggctaa ggtctagatg tccacacaaa tagttgtgtg
1901 gacccaatga cctggcccat atcgtcttcc ccgtcctact ctcaccctct
1951 atgacaatac tcatgggtct taaaggccgc gcagcggcac cgagaacatt
2001 ctcggcagcc cattcctcaa gttcctcggg aacttgatca aaagaagaag
2051 aagaaaaagg agaaacataa acctccaacg gaggtgtaaa aatcctatct
2101 aaattagcat ttaaattatg aaattgtaaa acataatctt tgggagcttt
2151 ctcccttaaa atattgaggg ccgaagactt ggaccctgaa ttgattgcct
2201 cggcatatgc gtcgttggca gattggcaac ctcctctagc tgatctgcca
2251 tcgatttgga aaactccaaa gtcaatgaag tctccgtctt tctccacata
2301 ggctttgaca tctgaagagc ttttagctct ctgaatgttc ggatggaaat
2351 gtgctgacct ggttggggaa ataaggtcga agaatcggtt gtttgtgcat
2401 tggtattttc cctcgaattg gacgagcacg tgtagatgag gttccctatt
2451 ctcatgcaat tctcggcaaa ccctaataaa taatttatta actggggttt
2501 ccaagttttg taattgggaa agtgcctctt ccttagtgag agagcagttg
2551 ggatatgtga ggaaataatt tttggcgttt atattgaatc tcccagccct
2601 aggcattttg gtggacactc aaacttacta tgtaatcggt ggaatggggg
2651 acaatatata tgtgtccacc aatggcaaat tggtaattag tgtcatctca
2701 aaaaattcaa aattcaaatt ccgacaaaag cggccatccg cattaatatt