Sequence of DPV Tomato severe leaf curl virus
Tomato severe leaf curl virus - SLP 3, complete genome.
ACC No: JN676151
Dated: 2012-09-03 | Length: 2593 | CRC: 446977767
ID JN676151; SV 1; circular; genomic DNA; STD; VRL; 2593 BP.
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AC JN676151;
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DT 23-JAN-2012 (Rel. 111, Created)
DT 03-SEP-2012 (Rel. 114, Last updated, Version 3)
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DE Tomato severe leaf curl virus - SLP 3, complete genome.
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KW .
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OS Tomato severe leaf curl virus - SLP 3
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2593
RX PUBMED; 22684489.
RA Banuelos-Hernandez B., Mauricio-Castillo J.A., Cardenas-Conejo Y.,
RA Guevara-Gonzalez R.G., Arguello-Astorga G.R.;
RT "A new strain of tomato severe leaf curl virus and a unique variant of
RT tomato yellow leaf curl virus from Mexico";
RL Arch. Virol. 158(9):1835-1841(2012).
XX
RN [2]
RP 1-2593
RA Banuelos-Hernandez B., Mauricio-Castillo J.A., Arguello-Astorga G.R.;
RT ;
RL Submitted (13-SEP-2011) to the INSDC.
RL Molecular Biology, Instituto Potosino de Investigacion Cientifica y
RL Tecnologica A.C., Camino a la Presa San Jose 2055, San Luis Potosi, S.L.P.
RL 78216, Mexico
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FH Key Location/Qualifiers
FH
FT source 1. .2593
FT /organism="Tomato severe leaf curl virus - SLP 3"
FT /host="tomoato plant"
FT /mol_type="genomic DNA"
FT /country="Mexico"
FT /collection_date="01-Jun-2011"
FT /db_xref="taxon:1127769"
FT gene 186. .941
FT /gene="AR1"
FT /note="CP"
FT CDS 186. .941
FT /codon_start=1
FT /gene="AR1"
FT /product="capsid protein"
FT /note="encapsidation of viral genome; coat protein"
FT /db_xref="GOA:H2E1I9"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:H2E1I9"
FT /protein_id="AEX93204.1"
FT /translation="MPKRDAPWRLMAGTPKVSRSSNQSPRTGIGPKFDKAHAWVNRPMY
FT RKPRIYRAWRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF
FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT KNDLRDRYQVMHKFYGKVTGGQYASNEQAIVRRFWRVNNHVVYNHQEAGKYENHTENAL
FT LWYMACTHASNPVYATLKIRIYFYDSVLN"
FT gene complement(938. .1336)
FT /gene="AL3"
FT /note="TrAP"
FT CDS complement(938. .1336)
FT /codon_start=1
FT /gene="AL3"
FT /product="replication enhancer protein"
FT /db_xref="GOA:H2E1J0"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:H2E1J0"
FT /protein_id="AEX93205.1"
FT /translation="MDSRTGESITVDQAESSVFIWEVPNPLYFTILSVENPIHTNTRIY
FT HIQIRFNHNLRKALHLHKAYLNYQIWTTSVRASGTNYLNRFKYLVLLYLDRLGVICINN
FT VVRAVRFATDKSYVNHVLENYSIKFKIY"
FT gene complement(1083. .1469)
FT /gene="AL2"
FT /note="TrAP"
FT CDS complement(1083. .1469)
FT /codon_start=1
FT /gene="AL2"
FT /product="transactivation protein"
FT /note="transcriptional regulator of late genes; silencing
FT supressor"
FT /db_xref="GOA:H2E1J1"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:H2E1J1"
FT /protein_id="AEX93206.1"
FT /translation="MQNSSPSTPPSIKPKHKIAKSRIRRKRIDLNCGCSFYQHIDCANH
FT GFTHRGEHHCGSGREFRFYLGSTKSPLFHDTQCREPNTHKHQDIPHPNTVQPQPEEGVA
FT STQSVPQLPNLDDISSSFWDELLK"
FT gene complement(1426. .2460)
FT /gene="AL1"
FT CDS complement(1426. .2460)
FT /codon_start=1
FT /gene="AL1"
FT /product="replication initiation protein"
FT /note="RCR-initiator protein; rolling-circle replication
FT initiator"
FT /db_xref="GOA:H2E1J2"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:H2E1J2"
FT /protein_id="AEX93208.1"
FT /translation="MPRNPNLFRLAAKNIFLTYPQCDIPKDEAIEMVQNLPWSVVKPTY
FT IRVAREEHADGFPHLHCLIQLSGKSNIKDARFFDLTHPRRSANFHPNAQAAKDTNAVQN
FT YITKEGDYCESGQYKVSGGTKSNKDDVYYNAVNAASAGEALDIIRAGDPKTFIVSYHNV
FT KANIERLFQKAPEPWVPPFPLSSFTNVPDEMQEWADDYFGRDAAARPERPISIIIEGES
FT RTGKTMWARALGPHNYLSGHLDFNSRVYSNEAEYNVIDDITPQYLKMKHWKELIGAQKD
FT WQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKSFLDKEENASLKAWTLHNAKFISLNST
FT LYQA"
FT gene complement(2014. .2381)
FT /gene="AL4"
FT CDS complement(2016. .2381)
FT /codon_start=1
FT /gene="AL4"
FT /product="AC4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:H2E1J3"
FT /protein_id="AEX93207.1"
FT /translation="MKLLKWFKICHGQSSNQRTYESPERNTQMDFRTSTVSSNSPGSPT
FT SRMLDFSTSLTPEGLPIFIQTHRQPKTPTPSRITSPKKVIIVNPDNTKCLGVQNQTKTT
FT FIITPSMQLVLERLSTL"
XX
SQ Sequence 2593 BP; 638 A; 556 C; 629 G; 770 T; 0 other;
jn676151 Length: 2593 03-SEP-2012 Type: N Check: 2338 ..
1 accggatggc cgcgattttt tttggacctg gcccactatc agaaattgcg
51 ttgggccttc ctggataaag ttaaccaatc agtacacgtt tgggtagtct
101 aattattact aacttggtca ccaagttgtt ttatggtcta taaatttgtc
151 gttatgtgtg tggtccaacc atgtaaatag tgataatgcc taagcgtgat
201 gccccatggc gcttaatggc gggtacccct aaggtgagtc ggtcctctaa
251 ccagtctccc cggactggta ttgggcctaa attcgataag gcccatgcct
301 gggtaaacag gcccatgtat aggaagccca ggatatatcg ggcttggaga
351 acgcccgatg ttccaagagg ctgtgaaggc ccatgtaagg tccagtccta
401 cgagcaacga cacgatatct cccacgtggg gaaagtcatg tgcatatccg
451 atgtcacacg tggtaatggt atcacccacc gtgttggtaa gcggttctgt
501 gttaagtctg tgtatatcct cggtaagata tggatggacg agaacatcaa
551 gctgaagaac cacacgaaca gtgtcatgtt ctggttagtg agggaccgta
601 gaccctatgg tacgcctatg gatttcggcc aggtgttcaa catgtttgac
651 aatgagccca gcactgccac ggtcaagaac gatctacgtg atcgttatca
701 ggtcatgcac aagttctacg gcaaggtgac aggtggacag tatgccagca
751 acgagcaggc tatagtcagg cgattctgga gggtcaacaa ccatgtggtc
801 tacaatcacc aagaggctgg caagtatgag aatcacacgg agaacgcgtt
851 gttatggtat atggcatgta ctcatgcctc taaccctgtg tatgctactc
901 ttaagatccg gatctatttt tatgattcgg tgttaaatta ataaattttg
951 aattttattg aataattctc aagtacatga tttacatatg atttatctgt
1001 tgcgaagcga acagctctga ctacattatt aatgcaaata acacctaacc
1051 tatctaaata caataagact aaatatttaa atctatttaa gtaattcgtc
1101 ccagaagctc gaactgatgt cgtccagatt tggtagttga ggtacgcttt
1151 gtgtagatgc aacgccttcc tcaggttgtg gttgaaccgt atttggatgt
1201 ggtatatcct ggtgtttgtg tgtattgggt tctctacact gagtatcgtg
1251 aaatagaggg gatttggtac ttcccagata aaaacggaac tctctgcctg
1301 atccacagtg atgctctccc ctgtgcgtga atccatggtt ggcgcaatcg
1351 atgtgctggt agaacgagca gccacagttt aggtctatcc tctttcgacg
1401 aatcctggac tttgcaattt tgtgcttagg cttgatagag ggtggagttg
1451 agggagatga attttgcatt gtggagtgtc caggctttta atgatgcatt
1501 ttcctctttg tcgaggaaac ttttatagct ggctccctct cctggattgc
1551 agagcacgat tgatggtatc ccacctttaa tttgaactgg ctttccgtat
1601 ttgcagtttg attgccagtc cttttgggcc ccaatcagct ctttccaatg
1651 cttcatcttt aaatattgcg gagtgatgtc atcaatgacg ttgtattccg
1701 cttcatttga gtaaacccta gaattgaaat ctaggtgtcc actcaaataa
1751 ttgtgtgggc ctaaggcacg cgcccacatt gtctttcccg tcctcgattc
1801 accctcgatg attatactta taggtctctc cggccgcgca gcggcatccc
1851 taccaaaata atcatctgcc cattcttgca tctcgtccgg aacgtttgtg
1901 aacgacgaga gtggaaacgg aggaacccat ggttccggag ccttctgaaa
1951 gagccgctcg atgttagctt tgacgttatg gtagcttaca ataaacgttt
2001 ttgggtcacc ggcccttata atgtcgagag cctctccagc actagctgca
2051 ttgacggcgt tataataaac gtcgtctttg tttgattttg tacccccaga
2101 cactttgtat tgtccggatt cacaataatc accttctttg gtgatgtaat
2151 tctggacggc gttggtgtct ttggctgcct gtgcgtttgg atgaaaattg
2201 gcagaccttc tggggtgagt gaggtcgaaa aatctagcat ccttgatgtt
2251 ggacttcccg gagagttgga tgagacagtg gaggtgcgga aatccatctg
2301 cgtgttcctc tctggcgact cgtatgtacg ttggtttgac gactgaccat
2351 ggcagatttt gaaccatttc aatagcttca tctttgggga tatcacactg
2401 tggatatgtt aagaaaatat ttttggcagc tagacgaaat aaattagggt
2451 tccgtggcat ttttgtaaat atgagccagg acaccagggg gagctctctc
2501 taaaactcta tgttgctggt gtcctggtgt cccatttata ctaaaaccct
2551 ctgggggaca ccaagggcaa attcggccat ccgcaataat att