Sequence of DPV Cotton leaf curl Multan virus
Cotton leaf curl Multan virus isolate Bt_09 segment A, complete sequence.
ACC No: JN678806
Dated: 2012-01-29 | Length: 2751 | CRC: -1457199991
ID JN678806; SV 1; circular; genomic DNA; STD; VRL; 2751 BP.
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AC JN678806;
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DT 29-JAN-2012 (Rel. 111, Created)
DT 29-JAN-2012 (Rel. 111, Last updated, Version 1)
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DE Cotton leaf curl Multan virus isolate Bt_09 segment A, complete sequence.
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KW .
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OS Cotton leaf curl Multan virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2751
RA Kumar J., Roy J.K., Tuli R.;
RT "Diversity of begomovirus infecting cotton in India";
RL Unpublished.
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RN [2]
RP 1-2751
RA Kumar J., Roy J.K., Tuli R.;
RT ;
RL Submitted (28-AUG-2011) to the INSDC.
RL Agri-Biotechnolgy, National Agri-Food Biotechnolgy Institute, India, C-127,
RL Phase-8, Mohali, Punjab 160071, India
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FH Key Location/Qualifiers
FH
FT source 1. .2751
FT /organism="Cotton leaf curl Multan virus"
FT /segment="A"
FT /isolate="Bt_09"
FT /mol_type="genomic DNA"
FT /country="India:Sri-Ganganagar"
FT /collection_date="Aug-2010"
FT /db_xref="taxon:223252"
FT gene 118. .483
FT /gene="AV2"
FT CDS 118. .483
FT /codon_start=1
FT /gene="AV2"
FT /product="movement protein"
FT /protein_id="AEY75713.1"
FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYELIRDL
FT ICILRSRNYVEASCRYRHFYARVESTPASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQ
FT EAQNVSDVQKSGCSKGM"
FT gene 278. .1048
FT /gene="AV1"
FT CDS 278. .1048
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="AEY75714.1"
FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQQAWT
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR
FT IGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTDKPQDFGEVFNMFDNEP
FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT gene complement(1051. .1455)
FT /gene="AC3"
FT CDS complement(1051. .1455)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /protein_id="AEY75715.1"
FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI
FT LSIRIQFNYNTRKALGLHKCFLTFRIWTTLHPQTGLFLRVFKTKVLKYLNNLGVISINL
FT VIKAVEHVLYNLIQQTMYVDQYSDIKFKLY"
FT gene complement(1148. .1600)
FT /gene="AC2"
FT CDS complement(1148. .1600)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcription activator protein"
FT /protein_id="AEY75716.1"
FT /translation="MRSSSLSKDPCTQVPIKVQHREAKRRNRRRRVDLECGCSYYLSIN
FT CHNHGFTHRGTHHCSSSREWRIYLGGSKSPLFQDHQPRQPSIHDEYGYTLDPDPVQLQH
FT SESSGTAQVFSNLPNLDDLTPSDWSFLKGIQNQSPQISEQSRCNFN"
FT gene complement(1497. .2588)
FT /gene="AC1"
FT CDS complement(1497. .2588)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication-associated protein"
FT /protein_id="AEY75717.1"
FT /translation="MAPPKRFKIQAKNYLITYPQCSLTKEEALSQIQAINTPSNKKYIK
FT LCRELHQNGEPHLHVLIQFEGKYQCTNKRFFDLVSPTRTAHFHPNIQGAKSSSDVKAYI
FT DKDGDTLGWGEFQIDGRSARGGRQTANDAYAAALNAGNKSEALRVIKELAPKDFVLQFH
FT NLNANLDRIFQEPPAPYISPFSPSSFDQVPEELEVWAIDNVVDAAARPIRPRSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEERNTALTNWAVKNAIFITLEGPL
FT YSGTNQSTAQGSEETQQEEESRS"
FT gene complement(2129. .2431)
FT /gene="AC4"
FT CDS complement(2129. .2431)
FT /codon_start=1
FT /gene="AC4"
FT /product="regulatory protein"
FT /protein_id="AEY75718.1"
FT /translation="MGNLIFTCSSSSRGSTNARIKDSSTWYPQPGQHISIRTFRELNQA
FT QMSRPTSTRTGTLSGGESFRSMEDQQEEDDRQPTTLTPQHLTQAISQRLLESLRN"
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SQ Sequence 2751 BP; 693 A; 560 C; 660 G; 838 T; 0 other;
jn678806 Length: 2751 29-JAN-2012 Type: N Check: 8088 ..
1 accggatggc cgcgcgattt ttttttgtgg gcccccgatt tatgagattg
51 ctccctcaaa gctaaataac gctcccgcac actataagta cttgcgcact
101 aagtttcaaa ttcaaacatg tgggatccac tgttaaacga attccctgat
151 acggttcacg ggtttcggtg tatgctttct gtgaaatatt tgcaactttt
201 gtcgcaggat tattcaccgg atacgcttgg gtacgagtta atacgggatt
251 taatttgtat tttacgctcc cgtaattatg tcgaagcgag ctgccgatat
301 cgtcatttct acgcccgcgt cgaaagtacg ccggcgtctg aacttcggca
351 gcccatacac cagccgtgct gctgccccca ttgtccgcgt cacaaaacaa
401 caggcatgga caaacaggcc tatgaacagg aagcccagaa tgtatcggat
451 gtacagaagt ccggatgttc caaggggatg tgagggtccc tgtaaggtac
501 agtcgtttga atctcgacac gatgttgtcc atattggtaa ggtaatgtgt
551 atttctgatg ttacgcgtgg agtcggtttg acccatcgta taggtaagcg
601 tttttgtgtc aagtcagttt atgttttagg taagatatgg atggacgaga
651 acatcaagac caagaaccat acgaattcgg tgatgttttt ccttgttcgt
701 gatcgacgac cgacagataa accacaagat tttggtgaag tatttaatat
751 gtttgataac gagcccagta cggccaccgt taagaacatg catagggatc
801 ggtaccaggt gttgaggaaa tggcatgcaa ccgttactgg tggtcaatat
851 gcatcgaagg aacaggcgtt ggttaagaag tttatcaggg ttaacaatta
901 tgttgtttac aaccagcagg aggcaggaaa atacgagaat cacaccgaga
951 atgcattgat gctttatatg gcttgtaccc atgctagtaa cccagtttat
1001 gctacgctta agattcggat atatttttat gactctgtaa cgaattgata
1051 ttaataaagt ttgaatttta tatctgaata ttgatctaca tacatagttt
1101 gttggattaa attgtacaat acatgttcta cagctttaat aactaaatta
1151 attgaaatta caccgagatt gttcagatat ttgaggactt tggttttgaa
1201 tacccttaag aaaagaccag tctgagggtg taaggtcgtc cagattcgga
1251 aggttagaaa acacttgtgc agtcccagag ctttccgagt gttgtagttg
1301 aactggatcc ggatcgagag tatatccata ttcgtcgtga atggacggtt
1351 gacgtggctg atgatcttga aatagagggg atttggaacc tcccagatat
1401 atgcgccatt ccctgcttga gctgcagtga tgggttcccc tgtgcgtgaa
1451 tccatggttg tggcagttga ttgacagata ataagaacac ccgcattcaa
1501 gatctactct cctcctcctg ttgcgtctct tcgcttccct gtgctgtact
1551 ttgattggta cctgagtaca ggggtccttc gagagtgatg aagatcgcat
1601 tctttactgc ccagtttgtt agtgcggtgt tcctttcctc gtctaggaat
1651 tctttataac tgctgttggg accaggattg cagaggaaga ttgttggtat
1701 cccgccttta atttgaactg gcttcccgta ctttgtgttg gattgccagt
1751 ccctttgggc ccccatgaac tctttaaagt gtttgaggaa atgcgggtcg
1801 acgtcatcaa tgacgttgta ccaggcgtcg ttactgtaga ccttgggact
1851 caggtccaga tgtccacaca aatagttatg tggtcccaat gacctagccc
1901 acatcgtctt ccccgtacga ctatctccct caattactat actccgaggt
1951 ctaatgggcc gcgcagcggc atcgacaacg ttgtcgatag cccaaacttc
2001 aagttcttct ggaacttgat cgaaagaaga aggagaaaaa ggagaaatat
2051 agggagccgg tggctcctga aagattctgt ctagatttgc atttaaatta
2101 tgaaattgta gtacaaaatc tttaggagct agttccttaa tgactctaag
2151 agcctctgac ttattgcctg cgttaagtgc tgcggcgtaa gcgtcgttgg
2201 ctgtctgtcg tcctcctctt gctgatcttc catcgatctg aaactctccc
2251 cacccgagag tgtccccgtc cttgtcgatg taggccttga catctgagct
2301 tgatttagct ccctgaatgt tcggatggaa atgtgctgtc ctggttgggg
2351 ataccaggtc gaagaatctt ttattcgtgc attggtactt cccctcgaac
2401 tggatgagca cgtgaagatg aggttcccca ttttggtgta actctctgca
2451 gagtttgatg tattttttat tcgagggtgt gttgatggct tgaatttggg
2501 aaagtgcttc ctctttagtg agtgagcact gtggataagt gatcaaataa
2551 tttttggctt gtattttaaa acgtttgggg ggagccattg actttggtca
2601 attagagaca actgattggc ttttactctg ggaattggag actggataca
2651 atttatagtg tctccaaatg gcatattctg taaataacta gaagttcgtt
2701 tgaaattcaa attccccttt gggctccaaa agcggccatc cgtataatat
2751 t