Sequence of DPV Tomato yellow leaf curl virus
Tomato yellow leaf curl virus isolate Haenam, complete genome.
ACC No: JN680150
Dated: 2011-10-30 | Length: 2774 | CRC: -12650213
ID JN680150; SV 1; circular; genomic DNA; STD; VRL; 2774 BP.
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AC JN680150;
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DT 30-OCT-2011 (Rel. 110, Created)
DT 30-OCT-2011 (Rel. 110, Last updated, Version 1)
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DE Tomato yellow leaf curl virus isolate Haenam, complete genome.
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KW .
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OS Tomato yellow leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2774
RA Park J., Kil E.-J., Kim J., Kwak H.-R., Kim M.-K., Lee K.-Y., Choi H.-S.,
RA Lee S.;
RT ;
RL Submitted (14-SEP-2011) to the INSDC.
RL Department of Genetic Engineering, Sungkyunkwan University, 300
RL Cheonchoen-dong, Jangan-gu, Suwon, Gyeonggi-do 440-746, Korea
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FH Key Location/Qualifiers
FH
FT source 1. .2774
FT /organism="Tomato yellow leaf curl virus"
FT /host="tomato"
FT /isolate="Haenam"
FT /mol_type="genomic DNA"
FT /country="South Korea"
FT /collection_date="2008"
FT /db_xref="taxon:10832"
FT gene 148. .498
FT /gene="V2"
FT CDS 148. .498
FT /codon_start=1
FT /gene="V2"
FT /product="V2 protein"
FT /protein_id="AER23877.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL
FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV
FT PKAQNIQNVSKP"
FT gene 308. .1084
FT /gene="V1"
FT CDS 308. .1084
FT /codon_start=1
FT /gene="V1"
FT /product="coat protein"
FT /protein_id="AER23878.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW
FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH
FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN
FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN"
FT gene complement(1081. .1485)
FT /gene="C3"
FT CDS complement(1081. .1485)
FT /codon_start=1
FT /gene="C3"
FT /product="C3 protein"
FT /protein_id="AER23879.1"
FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI
FT ISIQIRFNHNIRKVMGIHKCFLNFRIWTTLHPQTGHFLRVFRYEVLKYLDSLGVISINN
FT VIRSVDHVLYDVLENTINVTETHDIKYKFY"
FT gene complement(1226. .1633)
FT /gene="C2"
FT CDS complement(1226. .1633)
FT /codon_start=1
FT /gene="C2"
FT /product="C2 protein"
FT /protein_id="AER23880.1"
FT /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHL
FT NCNNHGFTHRGTHHCSSGREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ
FT HQEGHGDSQMFSQLPNLDDITSSDWSFLKSI"
FT gene complement(1542. .2615)
FT /gene="C1"
FT CDS complement(1542. .2615)
FT /codon_start=1
FT /gene="C1"
FT /product="C1 protein"
FT /protein_id="AER23881.1"
FT /translation="MPRLFNIYAKNYFLTYPNCSLSKEEALSQLKNLETPTNKKYIKVC
FT KELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK
FT DGDFIDFGVFQIDGRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL
FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAENVVSSAARPWRPISIVIEGDSR
FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS
FT NTKYGKPIQIKGGIPTIFLCNQGPTSSYKEYLDEEKNISLKNWTLKNATFVTLYEPLFA
FT SINQGPTQDSQEETNKA"
FT gene complement(2171. .2464)
FT /gene="C4"
FT CDS complement(2171. .2464)
FT /codon_start=1
FT /gene="C4"
FT /product="C4 protein"
FT /protein_id="AER23882.1"
FT /translation="MGNHISMCLSNSKANTNVRTNGSSTWYPQTGQHISIRTFRQLRAQ
FT QMSRPTWRKTETSLILEFSKSMADQLEEVSNLPTTHMPKHSIQAVNPRPSIY"
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SQ Sequence 2774 BP; 754 A; 533 C; 609 G; 878 T; 0 other;
jn680150 Length: 2774 30-OCT-2011 Type: N Check: 3157 ..
1 accggatggc cgcgcctttt ccttttatgt ggtccccacg agggttacac
51 agacgtcacc gtcaaccaat caaattgcat cctcaaacgt tagataagtg
101 ttcatttgtc tttatatact tggtccccaa gttttttgtc ttgcaatatg
151 tgggacccac ttcttaatga gtttcctgaa tctgttcacg gatttcgttg
201 tatgttagct attaaatatt tgcagtccgt tgaggaaact tacgagccca
251 atacattggg ccacgattta attagggatc ttatatctgt tgtaagggcc
301 cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgtct
351 cgaaggttcg ccgaaggctg aacttcgaca gcccatacag cagccgtgct
401 gctgtcccca ttgtccaagg cacaaacaag cgacgatcat ggacgtacag
451 gcccatgtac cgaaagccca gaatatacag aatgtatcga agccctgatg
501 ttccccgtgg atgtgaaggc ccatgtaaag tccagtctta tgagcaacgg
551 gatgatatta agcatactgg tattgttcgt tgtgttagtg atgttactcg
601 tggatctgga attactcaca gagtgggtaa gaggttctgt gttaaatcga
651 tatatttttt agggaaagtc tggatggatg aaaatatcaa gaagcagaat
701 cacactaatc aggtcatgtt cttcttagtc cgtgatagaa ggccctatgg
751 aagcagccca atggattttg gacaggtttt taatatgttc gataatgagc
801 ccagtaccgc aaccgtgaag aatgatttgc gggataggtt tcaagtgatg
851 aggaaatttc atgctacagt tattggtgga ccctctggaa tgaaggaaca
901 ggcattagtt aagagatttt ttaaaattaa cagtcatgta acttataatc
951 atcaggaggc agccaagtac gagaaccata ctgaaaacgc cttgttactg
1001 tatatggcat gtacgcatgc ctcgaatcca gtgtatgcaa ctatgaaaat
1051 acgcatctat ttctatgatt caatatcaaa ttaataaaat ttatatttta
1101 tatcatgagt ttctgttaca tttattgtgt tttcaagtac atcatacaat
1151 acatgatcaa ctgatctgat tacattgtta atggaaatta caccaagact
1201 atctaaatac ttaagaactt catatctaaa tactcttaag aaatgaccag
1251 tctgaggatg taatgtcgtc caaattcgga agttgagaaa acatttgtga
1301 atccccatga ccttcctgat gttgtggttg aatcttatct gaatggaaat
1351 gatgtcgtgg ttcattagaa atggcctctg gctgtgttct gttatcttga
1401 aatagagggg attgtttatc tcccagataa aaacgccatt ctctgcctga
1451 ggagcagtga tgagttcccc tgtgcgtgaa tccatgatta ttgcagttga
1501 ggtggaggta gtatgagcag ccacagtcta ggtctacacg cttacgcctt
1551 attggtttct tcttggctat cttgtgttgg accttgattg atacttgcga
1601 acagtggctc gtagagggtg acgaaggttg cattcttgag agtccaattt
1651 ttcaaggata tgtttttttc ttcgtctaga tattccttat atgaggaggt
1701 aggtccttga ttgcagagga agatagtggg aattccccct ttaatttgaa
1751 tgggcttccc gtactttgtg ttgctttgcc agtccctttg ggcccccata
1801 aattccttga agtgctttaa ataatgcggg tctacgtcat caatgacgtt
1851 gtaccacgca tcattgctgt acacctttgg gcttaggtct agatgtccac
1901 ataaataatt atgtgggcct agagacctgg cccacattgt tttccctgtt
1951 ctgctatcac cctcaatgac aatacttatg ggtctccatg gccgcgcagc
2001 ggaagacacg acgttctcgg cgacccactc ttcaagttca tctggaactt
2051 gattaaaaga agaagaaaga aatggagaaa cataaacttc taaaggagga
2101 ctaaaaatcc tatctaaatt tgaacttaaa ttatgaaatt gtaaaatata
2151 gtcctttggg gccttctctt ttaatatatt gagggcctcg gatttactgc
2201 ctgaattgag tgcttcggca tatgcgtcgt tggcagattg ctgacctcct
2251 ctagctgatc tgccatcgat ttggaaaact ccaaaatcaa tgaagtctcc
2301 gtctttctcc acgtaggtct tgacatctgt tgagctctta gctgcctgaa
2351 tgttcggatg gaaatgtgct gacctgtttg gggataccag gtcgaagaac
2401 cgttggttct tacattggta tttgccttcg aattggataa gcacatggag
2451 atgtggttcc ccattctcgt ggagttcttt gcaaactttg atgtattttt
2501 tatttgttgg ggtttctagg ttttttaatt gggaaagtgc ttcctcttta
2551 gagagagaac aattgggata tgttaggaaa taatttttgg catatatatt
2601 aaataaacga ggcatgttga aatgaatcgg tgtccctcaa agctctatgg
2651 caatcggtgt atcggtgtct tacttatacc tggacaccta atggctattt
2701 ggtaatttca tgaatgttca ttgtaattca aaattcaaaa atcaaatcat
2751 taaagcggcc atccgtataa tatt