Sequence of DPV Pepper golden mosaic virus
Pepper golden mosaic virus isolate Tablon, complete genome.
ACC No: JN688727
Dated: 2012-12-04 | Length: 2619 | CRC: 1880596443
ID JN688727; SV 1; circular; genomic DNA; STD; VRL; 2619 BP.
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AC JN688727;
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DT 04-DEC-2012 (Rel. 115, Created)
DT 04-DEC-2012 (Rel. 115, Last updated, Version 1)
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DE Pepper golden mosaic virus isolate Tablon, complete genome.
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KW .
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OS Pepper golden mosaic virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2619
RA Vargas J.A., Hernandez E., Barboza N., Hammond R., Mora F., Rojas M.,
RA Gilbertson R., Ramirez P.;
RT "Characterization of whitefly and whitefly-borne viruses populations";
RL Unpublished.
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RN [2]
RP 1-2619
RA Vargas J.A., Hernandez E., Barboza N., Hammond R., Mora F., Rojas M.,
RA Gilbertson R., Ramirez P.;
RT ;
RL Submitted (17-SEP-2011) to the INSDC.
RL Centro de Investigacion en Biologia Celular y Molecular, University of
RL Costa Rica, Sabanilla, San Pedro, San Jose 12060, Costa Rica
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FH Key Location/Qualifiers
FH
FT source 1. .2619
FT /organism="Pepper golden mosaic virus"
FT /isolate="Tablon"
FT /mol_type="genomic DNA"
FT /country="Costa Rica"
FT /lat_lon="9.49 N 83.59 W"
FT /collection_date="01-Oct-2008"
FT /db_xref="taxon:223301"
FT gene 208. .963
FT /gene="cp"
FT CDS 208. .963
FT /codon_start=1
FT /gene="cp"
FT /product="truncated coat protein"
FT /protein_id="AFQ00690.1"
FT /translation="MVKRDAPWRLMAGTSKVSRSANYSRGTGMGPKFDKAAAWVNRPMY
FT RKPRIYRTFRSSDVPRGCEGPCKVQSFEQRHDISHVGKVMCISDVTRGNGITHRVGKRF
FT CVKSAYVLGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATV
FT KNDLRDRYQVMHRFSAKVTGGQYASNEQALVRRFWKVNNYVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSITN"
FT gene complement(960. .1358)
FT /gene="AC3"
FT CDS complement(960. .1358)
FT /codon_start=1
FT /gene="AC3"
FT /product="AC3"
FT /protein_id="AFQ00691.1"
FT /translation="MDSRTGESITVRQAENSVFIWEVPNPLFFRIQRVEAPLDTRTRIY
FT HIEVRFNHNLRRALALHKAFLHFQVWTTSMTASGTTYLNRFKFRVMLYLHRLGAIGINN
FT VIRAVRFATDKSYVNYVLEHHEIKYKLY"
FT gene complement(1105. .1494)
FT /gene="AC2"
FT CDS complement(1105. .1494)
FT /codon_start=1
FT /gene="AC2"
FT /product="TrAP"
FT /protein_id="AFQ00692.1"
FT /translation="MLNSSSSTLPSIKAQHRIAKKRPVRRRRIDLNCGCSIFLHINCAN
FT NGFTHRGEHHCASGREFRFYLGGSKSPIFQDTTSGGPVGHQNQDIPHRSQVQPQPTPSV
FT GSPQGIPSFPSLDDFDDSFWDDIFK"
FT gene complement(1436. .2485)
FT /gene="AC1"
FT CDS complement(1436. .2485)
FT /codon_start=1
FT /gene="AC1"
FT /product="Rep"
FT /protein_id="AFQ00693.1"
FT /translation="MPLPPKSFRLQCKNIFLTYPQCDIPKDEALEMLQSLKWSVVKPIY
FT IRVSREEHSDGFPHLHCLIQLTGKCNIKDARFFDITHPRRSAQFHPNVQAAKDTNAVKN
FT YITKDGDYCETGQYKVSGGSKANKDDVYHNAVNAASAGEALDIIKAGDPRTFIVSYHNV
FT KSNIERLFKPPPKPWTPPYQLSSFNNVPEDMQHWVAEYFGRSSAARPDRPISIVIEGDS
FT RSGKTMWARALGPHNYLSGHLDFNSKVYSNDVEYNVIDDITPHYLKLKHWKELIGAQRD
FT WQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYIAFLNKEENAPLRAWTQKNAQFVILHAP
FT LYKSTAQDS"
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SQ Sequence 2619 BP; 675 A; 553 C; 637 G; 754 T; 0 other;
jn688727 Length: 2619 04-DEC-2012 Type: N Check: 7893 ..
1 accggatggc cgcgattttt cggagtcatt gggggaccac tcagaataga
51 gggctgagat taaatagata aagagagggg accaccaatt atttgatttt
101 gactgaccaa tcacatcccg cctgtcaagt ctagatattt gtgccttggt
151 gaccaaggtg tggtcctata aatgcacgtg catgtgcatt tagaccttta
201 attcaaaatg gttaagcggg atgccccatg gcgtttaatg gcggggacct
251 ccaaggtttc ccgctctgct aattattcac gtggcacggg tatgggccct
301 aaattcgata aggccgctgc gtgggttaac aggcccatgt acaggaagcc
351 caggatatat cggacgttta gaagctctga tgttcctaga ggctgtgaag
401 gaccgtgtaa ggtccagtca tttgagcagc ggcatgatat ctctcatgtt
451 ggcaaggtca tgtgcatttc ggacgtgaca cgtggtaatg gtattactca
501 tcgtgtaggc aagcgtttct gcgtcaagtc tgcatatgtt ttgggtaaga
551 tatggatgga tgagaatatc aagctgaaga accacaccaa cagcgtcatg
601 ttctggttgg tccgagatag gagaccatat ggtaccccta tggatttcgg
651 gcaggtgttc aacatgtatg acaacgagcc cagtacagcc actgtaaaga
701 acgatctgcg tgatcgttac caagttatgc acaggttctc ggctaaggtg
751 acaggtggac agtatgccag caacgagcag gcgttggtta ggcgattttg
801 gaaggtgaac aactacgttg tctacaacca tcaggaagct ggcaaatacg
851 agaatcatac tgagaacgcc ctcttattgt atatggcatg tacgcatgca
901 tctaaccctg tgtacgcgac attgaaaatt cgaatctatt tctatgattc
951 gataacaaat taataaagtt tgtattttat ttcatgatgc tcaagtacat
1001 aatttacata ggatttgtcc gtcgcaaagc gaacagctcg aattacattg
1051 tttatgccta tggcccctag tctatgtaaa tacaacatga cgcgaaattt
1101 gaatctattt aaatatgtcg tcccagaagc tgtcatcgaa gtcgtccaga
1151 cttggaaatg aaggaatgcc ttgtggagag ccaacgctcg gcgtaggttg
1201 tggttgaacc tgacttcgat gtggtatatc ctggttctgg tgtccaacgg
1251 ggcctccact cgttgtatcc tgaaaaatag gggatttgga acctcccaaa
1301 taaaaacgga attctctgcc tgacgcacag tgatgctctc cccggtgcgt
1351 gaatccatta tttgcgcagt tgatgtggag gaagatagag cagccgcagt
1401 ttaggtctat tcgtcgtctg cgaacaggtc tctttttagc tatcctgtgc
1451 tgtgctttta tagaggggag cgtggaggat gacgaattga gcattttttt
1501 gtgtccacgc tctcaaaggt gcattttcct ctttgttgag gaaagctata
1551 tagctgctac cttcccctgg attgcacagc acaattgatg gtatcccgcc
1601 tttaatttga actggctttc cgtatttaca gttggactgc cagtcccttt
1651 gggccccaat aagctctttc cagtgtttca actttagata atggggcgtg
1701 atatcatcaa tgacgttata ctccacatcg tttgaataga cctttgaatt
1751 gaaatcaagg tgaccgctca aataattatg tgggcctaat gcacgtgccc
1801 acattgtctt gccgcttcgc gaatcgccct caatgacaat actaatcggt
1851 ctatctggcc gcgcagcgga actccgacca aaatattcag caacccaatg
1901 ttgcatatcc tcaggaacgt tattaaacga cgaaagttga tacggaggag
1951 tccatggttt aggaggaggt ttgaacaggc gctcgatgtt agacttaacg
2001 ttatgatagc tgacaatgaa cgttcttgga tctccagctt ttataatgtc
2051 gagcgcctct cccgcacttg ctgcatttac agcgttatgg tagacgtcgt
2101 ctttatttgc tttggaacct ccggaaactt tgtactgtcc agtttcacaa
2151 taatcaccat ctttagtgat gtaattcttt acggcatttg tgtctttagc
2201 cgcctgaacg tttggatgaa actgggcaga tctccgaggg tgagtaatgt
2251 cgaagaaccg agcatctttg atgttgcact ttcctgttaa ctggatgaga
2301 cagtgcaagt gcggaaaccc atcggaatgc tcctcccgcg atacccgtat
2351 gtatattggt tttacaactg accattttaa ggactggagc atttcgagag
2401 cttcatcctt tgggatatcg cattgtggat atgttaaaaa aatgttttta
2451 cattgtaaac gaaatgattt tggtggtagt ggcatttctg caaatatgtt
2501 gtaggactcc aggagagtcc ctcataaaac cgtactatgt ttgtggagtc
2551 ctggagtccc ttaaatacta gaactctctg ggggaactcc aggggcaaaa
2601 gcggccatcc tataatatt