Sequence of DPV Jatropha mosaic India virus

Jatropha mosaic India virus-[Jatropha] isolate Gujarat1 coat protein (AV1) gene, partial cds; replication enhancer protein (AC3) and transcriptional activator protein (AC2) genes, complete cds; and replication-associated protein (AC1) gene, partial cds.

ACC No: JN807767

Dated: 2012-02-13 | Length: 1216 | CRC: 1057716381

                
ID   JN807767; SV 1; linear; genomic DNA; STD; VRL; 1216 BP.
XX
AC   JN807767;
XX
DT   13-FEB-2012 (Rel. 111, Created)
DT   13-FEB-2012 (Rel. 111, Last updated, Version 1)
XX
DE   Jatropha mosaic India virus-[Jatropha] isolate Gujarat1 coat protein (AV1)
DE   gene, partial cds; replication enhancer protein (AC3) and transcriptional
DE   activator protein (AC2) genes, complete cds; and replication-associated
DE   protein (AC1) gene, partial cds.
XX
KW   .
XX
OS   Jatropha mosaic India virus-[Jatropha]
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC   unclassified Begomovirus.
XX
RN   [1]
RP   1-1216
RA   Raj S.K., Srivastava A., Snehi S.K.;
RT   "Molecular characterization of a begomovirus causing mosaic disease on
RT   Jatropha curcas L. in India";
RL   Unpublished.
XX
RN   [2]
RP   1-1216
RA   Raj S.K., Srivastava A., Snehi S.K.;
RT   ;
RL   Submitted (28-SEP-2011) to the INSDC.
RL   Plant Molecular Virology, CSIR-National Botanical Research Institute, Rana
RL   Pratap Marg, Lucknow, U. P. 226001, India
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1216
FT                   /organism="Jatropha mosaic India virus-[Jatropha]"
FT                   /host="Jatropha curcas L."
FT                   /strain="AS-JC-7"
FT                   /isolate="Gujarat1"
FT                   /mol_type="genomic DNA"
FT                   /country="India"
FT                   /collected_by="Ashish Srivastava"
FT                   /collection_date="15-Sep-2011"
FT                   /db_xref="taxon:1143701"
FT   gene            <1. .378
FT                   /gene="AV1"
FT   CDS             <1. .378
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /protein_id="AFA26443.1"
FT                   /translation="TYTVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMYRDRY
FT                   QVLRKWSSTVTGGQYASKEQAIVRRFFRVNNYVVYNQQEAGKYENHTENALMLYMACTH
FT                   ASNPVYATLKIRIYFYDSVSN"
FT   gene            complement(375. .779)
FT                   /gene="AC3"
FT   CDS             complement(375. .779)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication enhancer protein"
FT                   /protein_id="AFA26444.1"
FT                   /translation="MDSRTGELITAAQAMNGVYTWEVPNPLYFKIIDHSSRPFLMEHDI
FT                   ITVQIRFNHNLRKALGLHQCWMDFKIWTTLRPQTLRFLRVFRYQVLRYLDMLGVICINT
FT                   VVRAVEHVLYSVLTGTDSLEQSNLIKFKIY"
FT   gene            complement(520. .927)
FT                   /gene="AC2"
FT   CDS             complement(520. .927)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transcriptional activator protein"
FT                   /protein_id="AFA26445.1"
FT                   /translation="MRPSSPSTGHSTQVPIKVQHRAAKRRAIRRRRXDLNCGCSYYVHI
FT                   NCHNHGFTHRGTHHCSSGDEWRLYLGGSKSPLFQDHRPQQPAVPDGTRHNNRPDTVQPQ
FT                   PEESVGTTSMLDGFQNLDDLTASDLAFLEGF"
FT   gene            complement(857. .>1216)
FT                   /gene="AC1"
FT   CDS             complement(857. .>1216)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="replication-associated protein"
FT                   /protein_id="AFA26446.1"
FT                   /translation="GDRLTSFCGHLDLSPRVYRNDAWYNVIDDVDPHYLKHFKEFMGAQ
FT                   RDWQSNTKYGKPVQIKGGIPTIILCNPGPISSYKEYLDEPKNTALKAXAIRNAXFISXD
FT                   GSLYSSADQGSTQGS"
XX
SQ   Sequence 1216 BP; 290 A; 280 C; 300 G; 342 T; 4 other;

jn807767 Length: 1216  13-FEB-2012  Type: N  Check: 2622  ..

       1  acgtacactg tgatgttctt cctcgtcagg gatcgtaggc ccgtggacaa
      51  accccaggat tttggtgagg tgttcaacat gttcgataac gagcccagta
     101  ctgctacggt taaaaacatg taccgtgatc ggtaccaggt gttaaggaag
     151  tggagttcca ctgtcactgg tggtcagtat gcgagcaaag agcaggcaat
     201  agttaggcgt ttttttaggg ttaataatta tgttgtgtat aatcagcaag
     251  aggctggtaa gtacgaaaac catacggaga atgcattgat gctgtacatg
     301  gcgtgtactc acgcctctaa ccccgtgtat gctacgctta agatacggat
     351  ctacttctac gattcagtat ccaattaata aattttaaat tttattaaat
     401  ttgactgctc caaactgtca gtccctgtga gtacactgta caatacatgc
     451  tctacggctc taacgaccgt atttatacat atgaccccta acatgtccag
     501  gtatctgagt acctggtacc taaaaaccct caagaaacgc aaggtctgag
     551  gccgtaaggt cgtccagatt ttgaaatcca tccagcattg atgtagtccc
     601  aacgctttcc tcaggttgtg gttgaaccgt atctggacgg ttattatgtc
     651  gtgttccatc aggaacggcc ggctgctgtg gtctatgatc ttgaaataga
     701  ggggatttgg aacctcccag gtatagacgc cattcatcgc ctgagctgca
     751  gtgatgagtt cccctgtgcg tgaatccatg gttgtggcag ttgatgtgca
     801  cgtagtacga gcacccgcag ttgaggtcta stctccgtcg ccggatggcc
     851  ctacgcttag ctgccctgtg ttgaaccttg atcggcactt gagtagagtg
     901  acccgtcgas ggagatgaag gwcgcatttc ttattgccya ggccttcaat
     951  gccgtattct tcggctcgtc aaggtactct ttatagctgg aaattggccc
    1001  aggattgcac aggatgatag tgggtatccc acctttaatt tgaaccggct
    1051  ttccgtattt ggtgttgctt tgccagtccc tctgggcccc catgaattcc
    1101  ttgaagtgct ttaggtagtg gggatctacg tcatcaatga cgttgtacca
    1151  cgcgtcgttt ctgtagaccc taggactcaa gtccagatgg ccacagaagg
    1201  aagtcagtct atcccc