Sequence of DPV Jatropha mosaic India virus

Jatropha mosaic India virus-[Jatropha] isolate Gujarat2 coat protein (AV1) gene, partial cds; replication enhancer protein (AC3) and transcriptional activator protein (AC2) genes, complete cds; and replication-associated protein (AC1) gene, partial cds.

ACC No: JN807768

Dated: 2012-02-13 | Length: 1174 | CRC: 504974904

                
ID   JN807768; SV 1; linear; genomic DNA; STD; VRL; 1174 BP.
XX
AC   JN807768;
XX
DT   13-FEB-2012 (Rel. 111, Created)
DT   13-FEB-2012 (Rel. 111, Last updated, Version 1)
XX
DE   Jatropha mosaic India virus-[Jatropha] isolate Gujarat2 coat protein (AV1)
DE   gene, partial cds; replication enhancer protein (AC3) and transcriptional
DE   activator protein (AC2) genes, complete cds; and replication-associated
DE   protein (AC1) gene, partial cds.
XX
KW   .
XX
OS   Jatropha mosaic India virus-[Jatropha]
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC   unclassified Begomovirus.
XX
RN   [1]
RP   1-1174
RA   Raj S.K., Srivastava A., Snehi S.K.;
RT   "Molecular characterization of a begomovirus causing mosaic disease on
RT   Jatropha curcas L. in India";
RL   Unpublished.
XX
RN   [2]
RP   1-1174
RA   Raj S.K., Srivastava A., Snehi S.K.;
RT   ;
RL   Submitted (28-SEP-2011) to the INSDC.
RL   Plant Molecular Virology, CSIR-National Botanical Research Institute, Rana
RL   Pratap Marg, Lucknow, U. P. 226001, India
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1174
FT                   /organism="Jatropha mosaic India virus-[Jatropha]"
FT                   /host="Jatropha curcas L."
FT                   /strain="AS-JC9"
FT                   /isolate="Gujarat2"
FT                   /mol_type="genomic DNA"
FT                   /country="India"
FT                   /collected_by="Ashish Srivastava"
FT                   /collection_date="15-Sep-2011"
FT                   /db_xref="taxon:1143701"
FT   gene            <1. .357
FT                   /gene="AV1"
FT   CDS             <1. .357
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /protein_id="AFA26447.1"
FT                   /translation="LVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMYRDRYQVLRKWS
FT                   STVTGGQYASKEQAIVRRFFRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYA
FT                   TLKIRIYFYDSVSN"
FT   gene            complement(354. .758)
FT                   /gene="AC3"
FT   CDS             complement(354. .758)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication enhancer protein"
FT                   /protein_id="AFA26448.1"
FT                   /translation="MDSRTGELITAAQAMNGVYTWEVPNPLYFKIIDHSSRPFLMEHDI
FT                   ITVQIRFNHNLRKALGLHQCWMDFKIWTTLRPQTLRFLRVFRYQVLRYLDMLGVICINT
FT                   VVRAVEHVLYSVLTGTDSLEQSNLIKFKIY"
FT   gene            complement(499. .906)
FT                   /gene="AC2"
FT   CDS             complement(499. .906)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transcriptional activator protein"
FT                   /protein_id="AFA26449.1"
FT                   /translation="MRPSSPSTGHSTPVPIKVQHRAAKRRAIRRRRVDLNCGCSYYVHI
FT                   NCHNHGFTHRGTHHCSSGDEWRLYLGGSKSPLFQDHRPQQPAVPDGTRHNNRPDTVQPQ
FT                   PEESVGTTSMLDGFQNLDDLTASDLAFLEGF"
FT   gene            complement(836. .>1174)
FT                   /gene="AC1"
FT   CDS             complement(836. .>1174)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="replication-associated protein"
FT                   /protein_id="AFA26450.1"
FT                   /translation="CGHLDLSPRVYRNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNT
FT                   KYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEPKNTALKAWAIRNATFISLDGPLYSSA
FT                   DQGSTQSS"
XX
SQ   Sequence 1174 BP; 281 A; 268 C; 294 G; 331 T; 0 other;

jn807768 Length: 1174  13-FEB-2012  Type: N  Check: 3837  ..

       1  ctcgtcaggg atcgtaggcc cgtggacaaa ccccaggatt ttggtgaggt
      51  gttcaacatg tttgataacg agcccagtac tgctacggtt aaaaacatgt
     101  accgtgatcg gtaccaggtg ttaaggaagt ggagttccac tgtcactggt
     151  ggtcagtatg cgagcaaaga gcaggcaata gttaggcgtt tttttagggt
     201  taataattat gttgtgtata atcagcaaga ggctggtaag tacgaaaacc
     251  atacggagaa tgcattgatg ctgtacatgg cgtgtactca cgcctctaac
     301  cccgtgtatg ctacgcttaa gatacggatc tacttctacg attcagtatc
     351  caattaataa attttaaatt ttattaaatt tgactgctcc aaactgtcag
     401  tccctgtgag tacactgtac aatacatgct ctacggctct aacgaccgta
     451  tttatacata tgacccctaa catgtccagg tatctgagta cctggtacct
     501  aaaaaccctc aagaaacgca aggtctgagg ccgtaaggtc gtccagattt
     551  tgaaatccat ccagcattga tgtagtccca acgctttcct caggttgtgg
     601  ttgaaccgta tctggacggt tattatgtcg tgttccatca ggaacggccg
     651  gctgctgtgg tctatgatct tgaaatagag gggatttgga acctcccagg
     701  tatagacgcc attcatcgcc tgagctgcag tgatgagttc ccctgtgcgt
     751  gaatccatgg ttgtggcagt tgatgtgcac gtagtacgag cacccgcagt
     801  tgaggtctac tctccgtcgc cggatggctc tacgcttagc tgctctgtgt
     851  tgaaccttga tcggcactgg agtagagtgg cccgtcgagg gagatgaagg
     901  tcgcatttct tattgcccaa gccttcaatg ccgtattctt cggctcgtca
     951  aggaactctt tatagctgga attgggccca ggattgcaca ggaagatagt
    1001  gggtatccca cctttaattt gaaccggctt tccgtatttg gtgttgcttt
    1051  gccagtccct ctgggccccc atgaattcct tgaagtgctt taggtagtgg
    1101  ggatctacgt catcaatgac gttgtaccac gcgtcgtttc tgtagaccct
    1151  aggactcaag tccagatggc caca