Sequence of DPV Ageratum yellow vein virus
Ageratum yellow vein virus isolate AFSP6b segment A, complete sequence.
ACC No: JN809820
Dated: 2012-01-16 | Length: 2747 | CRC: -335138931
ID JN809820; SV 1; circular; genomic DNA; STD; VRL; 2747 BP.
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AC JN809820;
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DT 16-JAN-2012 (Rel. 111, Created)
DT 16-JAN-2012 (Rel. 111, Last updated, Version 1)
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DE Ageratum yellow vein virus isolate AFSP6b segment A, complete sequence.
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KW .
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OS Ageratum yellow vein virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2747
RA Shih S.L., Tsai W.S., Lee L.M., Kenyon L.;
RT "First report and molecular characterization of begomoviruses infecting
RT Sauropus androgynus in Thailand";
RL Unpublished.
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RN [2]
RP 1-2747
RA Shih S.L., Tsai W.S., Lee L.M., Kenyon L.;
RT ;
RL Submitted (03-OCT-2011) to the INSDC.
RL Virology, AVRDC-The World Vegetable Center, PO Box 42, Shanhua, Republic of
RL China
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FH Key Location/Qualifiers
FH
FT source 1. .2747
FT /organism="Ageratum yellow vein virus"
FT /segment="A"
FT /host="Sauropus androgynus"
FT /isolate="AFSP6b"
FT /mol_type="genomic DNA"
FT /country="Thailand:Kamphaengsaen"
FT /collection_date="2010"
FT /db_xref="taxon:44560"
FT gene 134. .484
FT /gene="V2"
FT CDS 134. .484
FT /codon_start=1
FT /gene="V2"
FT /product="pre-coat protein"
FT /protein_id="AEX37955.1"
FT /translation="MWDPLVNEFPETVHGLRCMLAVKYCQLIEQTYAPDTVGYDLIRDL
FT ISVIRARNYVEASRRYSHFNSRLEGTTSSELRHPRDEPCCCPHCPRHQQKKDMDQQAHV
FT SQAQILQSVQKP"
FT gene 294. .1067
FT /gene="V1"
FT CDS 294. .1067
FT /codon_start=1
FT /gene="V1"
FT /product="coat protein"
FT /protein_id="AEX37952.1"
FT /translation="MSKRPADIVISTPASKVRRRLNFDTPVMSRAAAPTVLVTNKKRIW
FT TNRPMYRKPRFYRVYKSPDVPKGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGSGLTH
FT RVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVIFYLVRDRRPYGSAMDFGQVFNMYDNE
FT PSTATIKNDLRDRYQVLRKFTATVTGGQYASKEQALVRKFMKINNYVVYNHQEAAKYDN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDSVQN"
FT gene complement(1064. .1468)
FT /gene="C3"
FT CDS complement(1064. .1468)
FT /codon_start=1
FT /gene="C3"
FT /product="replication enhancement protein"
FT /protein_id="AEX37954.1"
FT /translation="MDSRTGELLTATQCESGVYIWTIKNPLYFKITKHHERPFNTNHDI
FT ITIQIQFNNNLRKALGIHQCFLNFQIWTRLQPQTWRFLRVFRVQCMKYLDNMGVISINN
FT VIRACDHVLWDVLEKTEYVTQSNIIKFNLY"
FT gene complement(1209. .1616)
FT /gene="C2"
FT CDS complement(1209. .1616)
FT /codon_start=1
FT /gene="C2"
FT /product="transcriptional activation protein"
FT /protein_id="AEX37953.1"
FT /translation="MRNSSPSRSHCTQVPIKVQHRIAKRQPVRRRRVDLTCGCSYYFGI
FT DCANHGFSHRGITHCNSMREWRVYLDDQKSPIFQDNQAPRETIQHQPRHHNDPNTVQQQ
FT PEESVGNTPVFSELPDLDSLTTSDLAFLKSI"
FT gene complement(1516. .2604)
FT /gene="C1"
FT CDS complement(1516. .2604)
FT /codon_start=1
FT /gene="C1"
FT /product="replication-associated protein"
FT /protein_id="AEX37951.1"
FT /translation="MPRTHQFQVKAKNIFLTYPKCPIPKEQMLELLKNISCPSDKLFIR
FT ISQEKHQDGSLHIHALIQFKGKCQFRNPRHFDVTHPNSSTQFHPNFQGAKSSSDVKSYI
FT EKDGDYIDWGQFQIDGRSARGGQQTANDAAAEALNAGSAEAALAIIREKLPKDFIFQYH
FT NLKCNLDRIFTPPLEVYVSPFLSSSFDQVPEELEEWVSENIRDAAARPWRPISIVIEGE
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNSALKDWAIKNAEFITITEPL
FT YSGTNQSATQNRQETTSSQAES"
FT gene complement(2190. .2447)
FT /gene="C4"
FT CDS complement(2190. .2447)
FT /codon_start=1
FT /gene="C4"
FT /product="C4 protein"
FT /protein_id="AEX37956.1"
FT /translation="MGLCISTRSSNSKVNASSETPDISMSLTLIAPPNSTQTSRELSPA
FT PMSSPTSRRTVITSTGVSFRSMDDLLEEVNRQLMMQQRRP"
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SQ Sequence 2747 BP; 721 A; 553 C; 596 G; 877 T; 0 other;
jn809820 Length: 2747 16-JAN-2012 Type: N Check: 2551 ..
1 accggatggc cgcgattttt tttaaagtgg tcccaccact aacaaatgtc
51 ccccaatcag aacgctctct caaagcttaa ttgttttgtg gtcccttatt
101 taaacttgct cagcaagtag ttctccccgc actatgtggg atccattagt
151 aaacgagttt cccgaaactg ttcacggtct taggtgtatg cttgccgtaa
201 aatattgtca gttaatcgaa cagacatacg ctccagatac ggttggttac
251 gatcttatac gagatttaat ttcagtaatt cgtgctcgca attatgtcga
301 agcgtcccgc cgatatagtc atttcaactc ccgcctcgaa ggtacgacgt
351 cgtctgaact tcgacacccc cgtgatgagc cgtgctgctg cccccactgt
401 cctcgtcacc aacaaaaaaa ggatatggac caacaggccc atgtatcgca
451 agcccagatt ctacagagtg tacaaaagcc ctgatgtgcc caaaggttgt
501 gaaggtccat gtaaggtcca atcatatgaa cagaggcacg acatatccca
551 tgttggtaaa gtattatgtg ttagtgatgt cactcgtggt agtgggctta
601 cccatcgtgt tggtaagaga ttctgtgtga agtccgttta tgtattgggt
651 aagatatgga tggatgaaaa tatcaaaact aagaaccata cgaacactgt
701 gattttttat cttgttcgtg atagaaggcc ctatggttct gctatggatt
751 ttggtcaggt gtttaacatg tatgataatg agcccagtac tgctacaatc
801 aagaatgatc ttcgagatcg ttatcaagtg ttaaggaaat tcactgcaac
851 agtcacaggt ggtcaatatg cttctaagga gcaggcgttg gttaggaaat
901 ttatgaagat taataattat gtagtttata atcatcaaga ggctgctaag
951 tatgacaatc atactgagaa tgccttgtta ttgtatatgg cttgtactca
1001 tgccagtaat ccagtgtatg ctactttgaa gatcagaatc tatttttatg
1051 attctgttca gaattaataa agattgaatt ttattatatt agattgtgtt
1101 acatattctg ttttttccaa tacatcccat aatacatgat cacatgctct
1151 aattacattg ttaatactaa ttacacccat attatctaaa tatttcatac
1201 attgaaccct aaatactctt aagaaacgcc aagtctgagg ttgtaagcga
1251 gtccagatct ggaagttcag aaaacactgg tgtattccca acgctttcct
1301 caggttgttg ttgaactgta tttggatcgt tatgatgtcg tggttggtgt
1351 tgaatggtct ctcgtggtgc ttggttatct tgaaatatag gggatttttg
1401 atcgtccaga tatacacgcc actctcgcat tgagttgcag tgagtaattc
1451 ccctgtgcga gaatccatga ttggcgcagt ctatgccgaa gtagtatgag
1501 cacccgcacg ttagatcaac tctccgcctg cgaactggtt gtctcttggc
1551 gattctgtgt tgcactttga ttggtacctg agtacaatgg ctccgtgatg
1601 gtgatgaatt ccgcattctt tattgcccag tcttttaatg ctgaattctt
1651 ttcctcgtcc aagtactctt tatatgatga tgttggccct ggattgcaaa
1701 ggaagatagt tgggattcca cctttaattt gaattggttt cccgtacttt
1751 gtgttgcttt gccagtccct ttgggccccc atgaattctt taaagtgttt
1801 tagatagtgg gggtctacgt catcaatgac gttgtaccag gcatcattac
1851 tgtacacctt tggactcaag tcaaggtgac cgcacagata attatgtgga
1901 cctaaggacc tggcccacat ggtctttcct gtcctacttt ctccctcaat
1951 gactatactt atgggcctcc aaggccgcgc agcggcatcc cttatattct
2001 cggaaaccca ttcttcaagt tcttctggaa cttgatcgaa agaagaagat
2051 aaaaaaggag aaacataaac ctccaacgga ggtgtaaaaa tcctatctaa
2101 attacatttt aaattatgat attgaaaaat aaaatctttt gggagttttt
2151 cccttattat tgctaacgcc gcttcagccg aacctgcatt tagggcctcc
2201 gctgctgcat cattagctgt ctgttgacct cctctagcag atcgtccatc
2251 gatctgaaac tgaccccagt cgatgtaatc accgtccttc tcgatgtagg
2301 acttgacatc ggagctggac ttagctccct ggaagtttgg gtggaattgg
2351 gtggagctat tagggtgagt gacatcgaaa tgtctggggt ttctgaactg
2401 gcatttacct ttgaattgga tgagcgcgtg gatatgcaga gacccatctt
2451 ggtgtttttc ttgtgatatt ctgataaata atttgtcaga tggacatgaa
2501 atgtttttaa ggagttcgag catttgctct tttggtattg ggcattttgg
2551 gtaagtgaga aagatatttt tggccttaac ttggaattgg tgtgtacgtg
2601 gcatattgaa tcgggtgctc tacaaacttc ataggaatgg ggtgctttgg
2651 gtgcctattt atatcgagct cccaaatggc aattttgtaa ttacgaaaag
2701 taatttaaaa tccttacgct cccaaaagcg gccatccgta taatatt