Sequence of DPV Chilli leaf curl virus
Pepper leaf curl Lahore virus-[Solanum capsicastrum] segment DNA-A, complete sequence.
ACC No: JN880419
Dated: 2012-02-13 | Length: 2740 | CRC: -642936766
ID JN880419; SV 1; circular; genomic DNA; STD; VRL; 2740 BP.
XX
AC JN880419;
XX
DT 13-FEB-2012 (Rel. 111, Created)
DT 13-FEB-2012 (Rel. 111, Last updated, Version 1)
XX
DE Pepper leaf curl Lahore virus-[Solanum capsicastrum] segment DNA-A,
DE complete sequence.
XX
KW .
XX
OS Pepper leaf curl Lahore virus-[Solanum capsicastrum]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2740
RA Raj S.K., Snehi S.K., Srivastava A.;
RT "Molecular identification of Pepper leaf curl Lahore virus associated with
RT leaf curl disease on Solanum capsicastrum in India";
RL Unpublished.
XX
RN [2]
RP 1-2740
RA Raj S.K., Snehi S.K., Srivastava A.;
RT ;
RL Submitted (20-OCT-2011) to the INSDC.
RL Plant Molecular Virology, CSIR-National Botanical Research Institute, Rana
RL Pratap Marg, Lucknow, U. P. 226001, India
XX
FH Key Location/Qualifiers
FH
FT source 1. .2740
FT /organism="Pepper leaf curl Lahore virus-[Solanum
FT capsicastrum]"
FT /segment="DNA-A"
FT /host="Solanum capsicastrum (winter cherry)"
FT /mol_type="genomic DNA"
FT /country="India"
FT /collected_by="Dr. S. K. Raj"
FT /collection_date="16-Sep-2011"
FT /db_xref="taxon:1143713"
FT gene 145. .510
FT /gene="AV2"
FT CDS 145. .510
FT /codon_start=1
FT /gene="AV2"
FT /product="precoat protein"
FT /protein_id="AFA26460.1"
FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLLENTYSPDTLGYDLIRDL
FT ISVIRAKNYVQATSRYNHFHARLEGTPPSQLRQPLCQPCCCPHCPRHKGQSMGEQAHEQ
FT EAQDVQDVQKPRCSKGV"
FT gene 305. .1075
FT /gene="AV1"
FT CDS 305. .1075
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="AFA26461.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPTVRVTKARAWV
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCNVQSFESRHDVVHIGKVMCISDVTRGTGLTHR
FT VGKRFCVKSVYVLREIWMDESIKTKNLTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPGYATLKIRIYFYDSVSN"
FT gene complement(1072. .1476)
FT /gene="AC3"
FT CDS complement(1072. .1476)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /protein_id="AFA26462.1"
FT /translation="MDSRTGEPITAAQAENSVFIWEITNPLYFKITEHHNRPFLRNHDI
FT ITVQIRFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVYKYLNNFAVISINN
FT VLRAVNHVLWNVLAQTIHVQSSNIIKFNLY"
FT gene complement(1217. .1621)
FT /gene="AC2"
FT CDS complement(1217. .1621)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcriptional activator protein"
FT /protein_id="AFA26463.1"
FT /translation="MRPSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR
FT CHGYGFTHRGTHHCSSSREFRVYLGDNKSPVFQDNRAPQPAIPEEPRHHHRADTVQSQP
FT EESVGDTQMFSNLPNLDDLTASDWSFLKGI"
FT gene complement(1524. .2651)
FT /gene="AC1"
FT CDS complement(1524. .2651)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication-associated protein"
FT /protein_id="AFA26464.1"
FT /translation="MSPIPQSFECPQFNMPRLNSFCVNAKNIFLTYPKCPIPKEQMLEI
FT LQSINCPSDKLFIRVAQEKHQDGSLHIHALIQFKGKSKFRNPRHFDVTHPNNSTQFHPN
FT FQGAKSSSDVKSYIEKDSDYIDWGQFQIDGRSARGGQQTANDAAAEALNAGSADAALAI
FT IREKLPKDFIFQYHNLKCNLDRIFTPPVEVYVSPFLSSSFNQVPEELEEWAAENVLGDA
FT ARPLRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHY
FT LKHFKEFKGAQRDWQSNTKYGKPVQIKGGIPAIPLCNPGPNSSYKEFLDEEKNSALKNW
FT ALKNATFITLEGPLYSGSNQSAAQAGQEGDQASSG"
FT gene complement(2195. .2452)
FT /gene="AC4"
FT CDS complement(2195. .2452)
FT /codon_start=1
FT /gene="AC4"
FT /product="C4 protein"
FT /protein_id="AFA26465.1"
FT /translation="MGLCISMPSSSSKVNPSSETPDISMSLTLITPPNSTQTSRELSPA
FT LMSSPTSRRTVITSTGVSFRSMEDLLEEVNRQLMMQQQRP"
XX
SQ Sequence 2740 BP; 730 A; 550 C; 648 G; 812 T; 0 other;
jn880419 Length: 2740 13-FEB-2012 Type: N Check: 5554 ..
1 accggatggc cgcgattttt tttagtgggc cccacaacac acgtgctgac
51 aatgacatgt ggaccaatta aaatcgtccc tcatagctta attatttcat
101 ggtcccctat ttaaacttgg gctccaagta gtgcactctt aacaatgtgg
151 gatccattag taaacgagtt tcctgaaacc gttcacggtt ttaggtgtat
201 gttagcagtt aaatatctgc agctactaga aaatacatat tctccagaca
251 ctctggggta cgatttaatc agggatttga tctccgttat tagggctaag
301 aattatgtcc aagcgaccag cagatataat catttccacg cccgcctcga
351 aggtacgccg ccgtctcaac ttcgacagcc cttatgccag ccgtgctgct
401 gcccccactg tccgcgtcac aaaggccaga gcatgggtga acaggcccat
451 gaacaggaag cccaggatgt acaggatgta cagaagccca gatgttccaa
501 gggggtgtga aggcccatgt aacgtccagt cttttgagtc tagacacgat
551 gtagttcata tagggaaggt tatgtgtatt agtgatgtta cccgtggtac
601 tgggttaacc catagagtag gtaagcgttt ctgtgttaag tctgtgtacg
651 tattacgtga gatatggatg gatgagagta tcaagactaa gaatcttacg
701 aatagtgtga tgtttttcct tgtccgtgat cgtcgtcctg ttgataaacc
751 acaagatttt ggagaggtgt tcaacatgtt tgacaacgag cctagcactg
801 ccactgtgaa aaatatgcat agagatcgtt atcaggtttt gaggaaatgg
851 cacgcaacgg ttactggtgg acagtacgcg tcgaaggaac aggcattagt
901 gaagaagttc gttagggtta ataattatgt tgtgtataac cagcaggaag
951 ctggtaaata tgagaatcat actgagaatg cattgatgtt gtacatggcg
1001 tgtactcacg cctctaatcc cgggtatgct accttaaaga tacggatcta
1051 tttctatgat tcagtatcaa attaataaag attgaatttt attatatttg
1101 aactttgtac atgaattgtt tgtgctaata cattccataa tacatggttg
1151 acagctctaa gtacattgtt tatactaatt acagcaaaat tatttaaata
1201 cttatacact tgggtcctaa atacccttaa gaaatgacca gtctgaggct
1251 gtaaggtcgt ccagattcgg aaggttagaa aacatttgtg tatccccaac
1301 gctttcctca ggttgtgatt gaaccgtatc tgcacggtga tgatgtcgtg
1351 gttcctcagg aatggccggt tgtggtgctc tgttatcttg aaatacaggg
1401 gatttgttat ctcccagata aacacggaat tctcggcttg agctgcagtg
1451 atgggttccc ctgtgcgtga atccatagcc gtggcagcgt aatgcgatga
1501 aatatgaaca accgcagtct aggtcaaccc gacgacgcct ggtccccttc
1551 ttggccagcc tgtgctgcac tttgattgga acctgagtag agtgggcctt
1601 cgagggtgat gaaggtcgca ttctttaaag cccaattttt gagtgcgcta
1651 ttcttctctt catccaagaa ctctttatag ctggaattgg gtcctggatt
1701 gcagagggga atagcgggaa ttccaccttt aatttgaact ggctttccgt
1751 atttagtgtt tgattgccag tccctttggg cccccttgaa ttctttaaag
1801 tgctttaggt agtggggatc gacgtcatca atgacgttgt accaggcgtc
1851 attactgtag acctttgggc taaggtcgag atgtccacac aaatagttgt
1901 gtggacctag tgacctggcc cacattgtct tgcctgttct actatcgccc
1951 tctatgacaa tacttatggg tcttaacggc cgcgcagcgt caccgagaac
2001 attctcggca gcccattcct caagttcttc aggaacttga ttaaaagaag
2051 aagataaaaa aggagaaaca taaacctcta caggaggtgt aaaaatccta
2101 tctaaattac attttaaatt atgatattga aaaataaaat ctttagggag
2151 tttttcccta attattgcta aagctgcgtc agctgaacct gcatttaggg
2201 cctctgctgc tgcatcatta gctgtctgtt gacctcctcg agcagatctt
2251 ccatcgatct gaaactgacc ccagtcgatg taatcactgt ccttctcgat
2301 gtaggacttg acatcagagc tggacttagc tccctggaag tttgggtgga
2351 attgggtgga gttattaggg tgagtgacat cgaaatgtct ggggtttctg
2401 aacttggatt tacctttgaa ctggatgagg gcatggatat gcagagaccc
2451 atcttggtgt ttttcttgtg ccactctgat aaataattta tcagatgggc
2501 aatttattga ctgaagaatc tcgagcattt gctctttggg tattgggcat
2551 tttggataag tgaggaagat atttttggca ttaacacaaa aagagttaag
2601 acgaggcata ttgaattggg gacactcaaa actctgagga atgggggaca
2651 ttggggacgc atttatatgg tgtccccaaa tggtcttttc gtaatttgca
2701 caactttaat tcaaataccc gataatcgcg gccatccgta