Sequence of DPV Potato virus Y
Potato virus Y isolate CC9_12 polyprotein-like gene, partial sequence.
ACC No: JN936416
Dated: 2012-10-25 | Length: 9405 | CRC: 223603687
ID JN936416; SV 1; linear; genomic RNA; STD; VRL; 9405 BP.
XX
AC JN936416;
XX
DT 25-OCT-2012 (Rel. 114, Created)
DT 25-OCT-2012 (Rel. 114, Last updated, Version 1)
XX
DE Potato virus Y isolate CC9_12 polyprotein-like gene, partial sequence.
XX
KW .
XX
OS Potato virus Y
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-9405
RA Visser J.C., Bellstedt D.U.;
RT "The molecular and biological characterization of South African isolates of
RT PVYNTN: implications for pathogenicity determinants";
RL Unpublished.
XX
RN [2]
RP 1-9405
RA Visser J.C., Bellstedt D.U.;
RT ;
RL Submitted (26-OCT-2011) to the INSDC.
RL Department of Biochemistry, Stellenbosch University, Lab 165, JC Smuts
RL Building, Van der Bijl Street, Stellenbosch, Western Cape 7600, South
RL Africa
XX
FH Key Location/Qualifiers
FH
FT source 1. .9405
FT /organism="Potato virus Y"
FT /host="Solanum tuberosum"
FT /strain="NTN"
FT /isolate="CC9_12"
FT /mol_type="genomic RNA"
FT /country="South Africa"
FT /collection_date="25-Oct-2005"
FT /db_xref="taxon:12216"
FT misc_feature <1. .9157
FT /note="similar to polyprotein"
XX
SQ Sequence 9405 BP; 2919 A; 1742 C; 2205 G; 2527 T; 12 other;
jn936416 Length: 9405 25-OCT-2012 Type: N Check: 9083 ..
1 ttgatgcaaa cttccatact cacccgctcc ttttgggcta gttgcgggga
51 aacgagaagt ttcaaccacc actgacccct tcgcaagttt ggagatgcag
101 cttagtgcgc gattacgaag gcaagagttt gcaactattc gaacatccaa
151 gaatggtact tgcatgtatc gatacaagac tgatgtccag attgcgcgca
201 ttcaaaagaa gcgcgaggag agagaaagag aggaatataa tttccaaatg
251 gctgcgtcaa gtgttgtgtc aaagatcact attgctggtg gagagccacc
301 ttcaaaactt gaatcacaag tgcggagggg tgtcatccac acaactccaa
351 ggatgcgcac agcaaaaaca tatcacacgc caaagttgac agagggacaa
401 atgaaccacc ttatcaagca ggtgaagcaa attatgtcaa ccaaaggagg
451 gtctgttcaa ctgattagca agaaaagtac ccatgttcac tataaagaag
501 ttttgggatc acatcgcgca gttgtttgca ctgcacacat gagaggttta
551 cgaaagagag tggactttcg gtgtgataaa tggaccgttg tgcgtctaca
601 gcatctcgcc aggacggaca agtggactaa ccaagttcgt gctactgatc
651 tacgcaaggg cgatagtgga gttatattga gtaatactaa tctcaaagga
701 aactttggaa gaagctcgga gggcctattc atagtgcgtg ggtcgcacga
751 aggaaaaatc tatgatgcac gttccaaggt tactcaaggg gttatggatt
801 caatggttca gttctcaagc gctgaaagct tttggaaggg attggacggc
851 aattgggcac aaatgagata tcctacagat catacatgtg tggcaggctt
901 accagttgag gactgtggca gagttgcagc gataatgaca cacagtattt
951 taccgtgcta taagataacc tgccctacct gtgcccaaca atatgccaac
1001 ttgccagcca gtgacttact taagatatta cacaagcacg caagtgatgg
1051 tttaaatcga ttgggggcag acaaagatcg ctttgtgcat gtcaaaaagt
1101 tcttgacaat cttagagcac ttaactgaac cggttgatct gagtctagaa
1151 attttcaatg aagtattcaa gtctataggg gagaagcaac aatcaccttt
1201 caaaaacctg aatattctga ataatttctt tttgaaagga aaggaaaata
1251 cagctcgtga atggcaggtg gctcaattaa gcttacttga attggcaaga
1301 ttccaaaaga acagaacgga taatatcaag aaaggagaca tctcgttctt
1351 taggaataaa ctatctgcca aagcaaattg gaacttgtat ctgtcatgtg
1401 ataaccagct ggataagaat gcaaacttcc tgtggggaca gagagaatat
1451 catgctaagc gatttttctc gaactatttc gaggaaatta atccagcgaa
1501 gggctattca gcatacgaaa atcgtttgca cccgaatggg acaagaaaac
1551 ttgcaattgg aaacctaatt gtaccacttg atctggctga gtttaggcgg
1601 aagatgaaag gtgattataa aagacagcca ggggtgagta agaagtgcac
1651 gagctcgaag gatggaaact acgtgtatcc ctgttgttgc actacacttg
1701 atgatggctc agctgttgaa tcaacatttt acccgccaac taagaagcac
1751 ctcgtaatag gtaatagtgg cgatcaaaag tatgttgact taccaaaagg
1801 gaattctgag atgttatata ttgccaggca aggtttctgt tacattaaca
1851 ttttcctcgc gatgttgatt aacattagtg aggaagatgc aaaggatttc
1901 actaagaagg ttcgtgacat gtgtgtgcca aagcttggaa cctggccaac
1951 catgatggat ctggctacaa cttgtgctca aatgaaaata ttctaccctg
2001 atgttcatga tgcagaactg cctagaatac tagtcgatca ccaaacgcag
2051 acatgccatg tggttgactc gtttggctca caaacaactg ggtatcatat
2101 tttgaaagca tctagcgtgt cccaacttat tttgtttgct aatgatgagt
2151 tggagtctga cattaagcac tatagagttg gtggtattcc taatgcatgc
2201 cctgaacttg ggtctacaat atcacctttc agagaaggag gagttataat
2251 gtctgagtcg gcagcgctga aactgctttt gaagggaatt tttagaccta
2301 aggtgatgag acagttgctg ttagatgagc cttacctgtt gattctatca
2351 atattatccc ctggcatact gatggctatg tacaataatg ggatttttga
2401 acttgcggta aggttgtgga ttaatgagaa acaatccata gctatgatag
2451 catcgctact atcagcttta gccctacgag tgtcagcggc agaaacactc
2501 gtcgcacaga ggattataat tgatactgca gccacagatc tccttgatgc
2551 tacgtgcgat gggttcaacc tacatctaac gtaccccact gcgttgatgg
2601 tgttgcaagt tgttaagaat agaaatgaat gtgatgatac cctattcaag
2651 gcgggttttc caagttacaa cacgagcgtc gtacagatca tggaaaaaaa
2701 ttatctaaat ctcttgaacg atgcttggaa agatttaact tggcgggaaa
2751 aattatccgc aacatggtac tcatacagag caaaacgctc tatcactcgg
2801 tacataaaac ccacaggaag ggcagatttg aaagggttat acaacatatc
2851 accacaagca ttcttgggcc gaggcgccca ggtggtcaaa ggcactgcct
2901 caggattgag cgagcgattt aataattatt tcaatactaa gtgtgtgaat
2951 atttcatcct ttttcattcg tagaatcttt aggcgtttgc caactttcgt
3001 cacttttgtt aactcattat tagttattag tatgttaacc agcgtagtgg
3051 cagtgtgtca ggcaataatt ttagatcaga ggaagtatag gagagaaatt
3101 gagttgatgc agatagagaa gaatgagatc gtctgcatgg agctatatgc
3151 aagtttacag cgcaaacttg aacgcgattt cacatgggat gagtacattg
3201 agtatttgaa gtcagtaaac cctcagatag ttcagtttgc tcaagcgcag
3251 atggaagaat atgatgtgcg acaccagcgt tccacaccag gtgttaaaaa
3301 tttggaacaa gtggtagcat ttatggcttt agtcatcatg gtgttcgatg
3351 ctgaaaggag tgattgcgtg ttcaaaactc tcaataaatt taagggtgtc
3401 ctttcctcac tggaccatga agttagacat cagtccttag acgatgtgat
3451 caagaatttt gatgagagga atgagactat tgattttgaa ttgagtgagg
3501 acacaattcg aacatcatca gtgctagata caaagtttag tgattggtgg
3551 gaccgacaaa tccagatggg acatacactt ccacattaca gaaccgaggg
3601 gcacttcatg gaattcacaa gagcaactgc tgtccaagtg gctaatgata
3651 tcgcccacag cgaacaccta gactttctag tagggggagc tgttgggtct
3701 ggaaagtcaa ctgggttgcc tgttcatttt agtgtagccg gatctgtgtt
3751 tttatttgaa ccaacgcgcc ccctagcgga aaactttttc aaacagctat
3801 ctagtgaacc attcttcaaa aagccaacac tgcgtatgcg tggaaatagt
3851 atttttggct cttccccatt ctccgtcatg actagcggat ttgccctcca
3901 ctacttcccc aataatcgct ctcaattagc tcacttcaac tttgtgatat
3951 ttgatgagtg ccatgttctg gatccttccg cagtggcttt ccgcattctg
4001 ctgagtgttt atcatcaagc atgcaaagta ttaaaagtgt cacctactcc
4051 agggggaaga gaggttgatt ttacaacaca ccacccagtc aagttaatag
4101 tggaggacac actgtctttc caatcatttg ttgatgcaca aggttctaaa
4151 actaatgctg atgttgttca tttgggttca aacgtacttg tgtacttgtc
4201 gagctacatt gaatttaaca cctgggctaa gctcctaaca gacaagaata
4251 tgatggtcac aaaggttgat ggcagaacaa tgaagcacgg ttgcctagaa
4301 attgtcacaa aaggaaccag tgcgagacca cattttgttg tagcaaccaa
4351 cataattgag aatggagtga ctttggacat agacgtggtt gtagattttg
4401 ggttgaaagt ctcaccgttc ttggacattg acaataggag cattgcttac
4451 aataaggtga gtgttagcta tggtgagaga attcaaaggc tgggtcgtgt
4501 tggacgcttc aagaaaggag tagcattgcg cattggacac actgagaagg
4551 gaattattga aattccaagc atgatcgcta cagaggcggc tcttgcttgc
4601 tttgcatata acttgccagt gatgacagga ggcgtctcaa ctagtctgat
4651 tggcaattgt actgtgcgcc aagttaaaac aatgcagcaa tttgaattga
4701 gtcccttctt tatccagaat ttcgttgccc acgatggatc aatgcatcct
4751 gtcatacatg acattcttaa aaagtataaa cttcgagatt gtatgacacc
4801 tttgtgcgat cagtctatac catacagggc atcgagcact tggttatcgg
4851 ttagtgaata tgagcgactt ggagtggcct tagaaattcc aaagcaagtc
4901 aaaattgcat tccatatcaa agagatccct cctaagctcc acgaaatgct
4951 ttgggaaacg gttgtcaagt acaaagacgt ttgcttattt ccaagcattc
5001 gagcatcgtc catcagcaaa atcgcataca cattgcgtac agacctcttc
5051 gccatcccaa gaactctaat attggtggag agactgcttg aagaggagcg
5101 agtgaagcag agccaattca gaagtctcat cgaccaagga tgctcaagca
5151 tgttttcaat tgtcaacttg acaaacactc tcagagctag atatgcaaaa
5201 gattacaccg cagagaatat acaaaaactt gagaaagtga gaagtcaatt
5251 gaaagaattc tcaaatttgg atggttctgc atgtgaggaa aatttaataa
5301 agaggtatga gtctttgcag ttcgttcatc accaagttgc gacgtcactt
5351 gcaaaggatc tcaagttgaa ggggacttgg aagaagtcat tagtggccaa
5401 agatttgatc atagcaggcg ctgttgcaat tggtggaata ggactcatat
5451 atagttggtt cacacaatca gttgagactg tgtctcacca agggaaaaat
5501 aaatccaaaa gaattcaagc cttgaagttt cgccatgctc gtgacaaaag
5551 ggctggcttt gaaattgaca acaatgatga cacaatagag gaattctttg
5601 gatctgcata caggaagaag ggaaaaggta aaggcaccac tgttggtatg
5651 ggcaagtcaa gcaggaggtt tgttaatatg tatggatttg acccaacaga
5701 atattcattc atccagttcg ttgatccgct cactggagct caaattgaag
5751 agaacatcta tgctgatatt agagacatcc aagagcgctt tagtgatgtc
5801 cgcaagaaaa tggtagagga tgatgaaatc gaattgcaag cattgggcag
5851 caacacaacc attcatgctt acttcaggaa agattggtct gacaaggctc
5901 taaaaattga tttgatgcca cacaacccac tcaaaatctg tgataaatcg
5951 aatggcattg ctaagtttcc tgaaagagaa cttgagttga gacaaactgg
6001 gccagcaata gaggttgatg tgaaagacat tccaaaacag gaagtggagc
6051 atgaagccaa atcactcatg agaggtttaa gggatttcaa tccaattgct
6101 caaacagttt gcagagtaaa agtgtctgtt gaatatggaa cgtctgaaat
6151 gtatgggttc ggttttggtg cgtatattat agtaaaccac catctattca
6201 agagtttcaa tggatccatg gaagtgcgat caatgcatgg aacattcaga
6251 gtgaagaatt tgcatagctt gagcgtttta ccgatcaaaa gcagagacat
6301 tatcatcata aagaaaacaa aagatttccc tgttttccca caaaaactgc
6351 acttccgagc tgcagtgcag aatgagagga tttgtttggt tggaactaat
6401 tttcaagaaa aacatgcatc atcaatcatc acagaaacga gtactacata
6451 caatgtaccg ggcagcactt tttggaagca ttggattgaa acaaatgatg
6501 ggcattgtgg attaccagta gtgagtacag ctgatggatg tctagttgga
6551 atacacagct tggcgaataa tgtgcaaacc acgaattatt attcagcctt
6601 tgatgaggat tttgaaagta agtatctccg aactaatgag cataatgagt
6651 ggaccaaatc gtgggtttat aacccagata ctgtgttgtg gggtccattg
6701 aagctcaagg agagtacccc taaaggcctg tttaagacaa caaaacttgt
6751 acaggattta nttgatcatg atgttgttgt agagcaagct aaacattctg
6801 cgtggatgta tgaggctcta acagggaatt tgcaagctgt ggcgacaatg
6851 aagagtcagc tggtgacaaa gcacgtggtc aaaggggagt gtcggcactt
6901 caaagagttc ttaactgtgg attcggaagc agaagctnnn nnnttcttca
6951 ggcctttgat ggatgcttat gggaagagct tgttaaatag agaagcatat
7001 ataaaggaca taatgaaata ctcaaagcct attgatgttg gaacagtaga
7051 ctgtgatgct tttgaagagg ctatcaatag ggttatcatt tatctgcaag
7101 tgcatggctt ccagaaatgc aattacatca ccgatgagca ggaaattttc
7151 aaagctctca atatgaaagc tgctgtcgga gctatgtatg gaggcaagaa
7201 gaaagactac tttgagcatt ttactgaggc ggataaagag gaaattttta
7251 tgcaaagttg ccttcgattg tacaagggct cgcttggcat atggaatgga
7301 tcgttgaaag cagaacttcg gtgcaaagag aagatacttg caaataagac
7351 aaggacattc actgctgcac ctttagatac tctactgggt ggaaaggtgt
7401 gcgttgatga ttttaataat caattctact cgaagaacat tgaatgctgc
7451 tggactgttg gaatgactaa gttttatgga ggttgggaca aattgcttcg
7501 gcgtctacct gaaaattnnn gggtgtactg cgatgccgat ggttcacaat
7551 tcgatagttc actcacccca tacctaatta atgctgttct catcatcaga
7601 agcacataca tggaagattg ggacttgggg ttgcaaatgt tgcgcaattt
7651 gtacacagaa ataatttaca caccaatctc aactccagat ggaacaattg
7701 tcaagaagtt tagaggtaat aatagcggtc aaccttctac cgttgtggat
7751 aattctctca tggttgtcct tgctatgcat tacgctctca ttaaggagtg
7801 cgttgagttt gaagaaatcg acagcacgtg tgtattcttt gttaatggtg
7851 atgacttatt gattgctgtg aatccggaga aagagagcat tctcgataga
7901 atgtcacaac atttctcaga tcttggtttg aactatgatt tttcgtcgag
7951 aacaagaagg aaggaggaat tgtggttcat gtcccataga ggcctgctaa
8001 tcgagggtat gtacgtgcca aagcttgaag aagagagaat tgtatccatt
8051 ttgcaatggg atagagctga tctgccagaa cacagattag aagcgatttg
8101 tgcagcaatg atagaatcct ggggttattt tgagttaacg caccaaatca
8151 ggagattcta ctcatggttg ttgcaacagc aacctttttc aacgatagca
8201 caggaaggaa aagctccata catagcgagc atggcattga agaagctgta
8251 catggatagg acagtagatg aggaggaact gaaggctttc actgaaatga
8301 tggttgcctt ggatgatgaa cttgagtgcg atacttatga agtgcaccat
8351 caaggaaatg acacaatcga tgcaggagga agcactaaga aggatgcaaa
8401 acaagagcaa ggtagcattc aaccaaatct caacaaggaa aaggaaaagg
8451 acgtgaatgt tggaacatct ggaactcata ctgtgccacg aattaaagct
8501 atcacgtcca aaatgagaat gcccaagagt aaaggtgcaa ctgtactaaa
8551 tttggaacac ttactcgagt atgctccaca gcaaattgac atctcaaata
8601 ctcgagcaac tcaatcacag tttgatacgt ggtatgaagc ggtacaactt
8651 gcatacgaca taggagaaac tgaaatgcca actgtgatga atggccttat
8701 ggtttggtgc attgaaaatg gaacctcgcc aaacatcaac ggagtttggg
8751 ttatgatgga tggagatgaa caagtcgaat acccactgaa accaatcgtt
8801 gagaatgcaa aaccaacact taggcaaatc atggcacatt tctcagatgt
8851 tgcagaagcg tatatagaaa tgcgcaacaa aaaggaacca tatatgccac
8901 gatatggttt agttcgtaat ctgcgcgatg gaagtttggc tcgctatgct
8951 tttgactttt atgaggtcac atcacgaaca ccagtgaggg ctagggaagc
9001 gcacattcaa atgaaggccg cagcattgaa atcagcccaa cctcgacttt
9051 tcgggttgga cggtggcatc agtacacaag aggagaacac agagaggcac
9101 accaccgagg atgtctctcc aagtatgcat actctacttg gagtcaagaa
9151 catgtgattg tagtgtctct ccggacgata tataagtatt tacatatgca
9201 gtaagtattt tggcttttcc tgtactactt ttatcataat taataatcag
9251 tttgaatatt actaatagat agaggtggca gggtgatttc gtcattgtng
9301 gtgactctat cttttatttc cgcattatta agtcttagat aaaagtgccg
9351 ggttgtcgtt gttgtggatg atcnatcgat taggtgatgt tgcgattctg
9401 tcgta