Sequence of DPV Potato virus Y
Potato virus Y isolate DD051_7 polyprotein-like gene, partial sequence.
ACC No: JN936417
Dated: 2012-10-25 | Length: 7787 | CRC: 1160257484
ID JN936417; SV 1; linear; genomic RNA; STD; VRL; 7787 BP.
XX
AC JN936417;
XX
DT 25-OCT-2012 (Rel. 114, Created)
DT 25-OCT-2012 (Rel. 114, Last updated, Version 1)
XX
DE Potato virus Y isolate DD051_7 polyprotein-like gene, partial sequence.
XX
KW .
XX
OS Potato virus Y
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-7787
RA Visser J.C., Bellstedt D.U.;
RT "The molecular and biological characterization of South African isolates of
RT PVYNTN: implications for pathogenicity determinants";
RL Unpublished.
XX
RN [2]
RP 1-7787
RA Visser J.C., Bellstedt D.U.;
RT ;
RL Submitted (26-OCT-2011) to the INSDC.
RL Department of Biochemistry, Stellenbosch University, Lab 165, JC Smuts
RL Building, Van der Bijl Street, Stellenbosch, Western Cape 7600, South
RL Africa
XX
FH Key Location/Qualifiers
FH
FT source 1. .7787
FT /organism="Potato virus Y"
FT /host="Solanum tuberosum"
FT /strain="O"
FT /isolate="DD051_7"
FT /mol_type="genomic RNA"
FT /country="South Africa"
FT /collection_date="11-Oct-2007"
FT /db_xref="taxon:12216"
FT misc_feature <1. .7506
FT /note="similar to polyprotein"
XX
SQ Sequence 7787 BP; 2361 A; 1432 C; 1853 G; 2100 T; 41 other;
jn936417 Length: 7787 25-OCT-2012 Type: N Check: 3841 ..
1 agctcgaaag atggtaatta tgtgtatccc tgttgttgca caacacttga
51 tgatggttca gctattgaat caacattcta tccaccaact aaaaagcacc
101 ttgtaatagg caatagtggt gaccaaaaat ttgttgattt accaaaaggg
151 gattcagaga tgttatacat cgccaagcag ggttattgtt atattaacgt
201 gtttcttgca atgctgatta acattagcga ggaggatgca aaggatttta
251 ctaagaaagt tcgcgacatg tgtgtgccaa agcttggaac ctggccaact
301 atgatggatt tggcaaccac ttgtgctcaa atgagaatat tctaccctga
351 cgtgcatgat gcggaactgc ctagaatatt ggttgaccat gacactcaaa
401 cgtgtcatgt ggttgactca tttggctcgc aaacaacagg atatcatatt
451 ctaaaggcat ccagcgtgtc tcaacttatc ttgtttgcaa atgatgaatt
501 agaatctgat ataaaacatt atagagttgg tggtgttcct aatgcatgcc
551 ctgaacttgg gtccacaata tcacctttca gagaaggagg agttatcatg
601 tctgagtcgg cagcgctgaa actgcttttg aagggaattt ttagacctaa
651 ggtgatgaga cagttgctgt tagatgagcc ttacctgttg attctatcaa
701 tattatcccc tggcatactg atggctatgt ataataatgg gatttttgaa
751 cttgctgtaa ggttgtggat taatgagaaa caatccatag ctatgatagc
801 atcgctacta tcagctttag ccctacgagt gtcagcggca gaaacactcg
851 tagcacagag gattataatt gatgctgcag ctacggacct ccttgatgct
901 acgtgtgatg ggttcaacct acatctaacg taccccactg cactgatggt
951 gttgcaagtt gttaagaata gaaatgaatg tgatgatacc ctattcaagg
1001 cgggttttcc aagttacaac acgagtgttg tgcagattat ggaaaaaaat
1051 tatctaagtc tcttggacga tgcttggaaa gatttaactt ggcgggaaaa
1101 gttatccgca acatggcact catacagagc aaaacgctct atcactcggt
1151 atataaaacc cacaggaagg gcagatttga aagggttata caacatatca
1201 ccacaagcct tcttgggccg aagcgctcag gtggtcaaag gtactgcctc
1251 aggattgagc gagcgattta ataattattt caatactaag tgtgtaaata
1301 tttcatcctt tttcattcgt aggatcttta ggcgtttgcc aactttcgtc
1351 acttttgtta actcgttatt agttattagc atgttaacta gcgtagtggc
1401 agtgtgtcag gcaataattt tagatcagag gaagtatagg agagaaatcg
1451 agttgatgca gatagagaag aatgagattg tctgcatgga gctatatgca
1501 agtctacagc gcaaacttga acgcgatttc acatgggatg agtacattga
1551 gtatttgaag tcagtaaacc ctcagatagt tcagtttgct caagcgcaga
1601 tggaagaata tgatgtgcga caccagcgtt ccacaccagg tgttaaaaat
1651 ttggaacaag tggtagcatt tatggcttta gtcatcatgg tgttcgatgc
1701 tgaaaggagt gattgcgtgt tcaaaactct caataaattt aagggtgtcc
1751 tttcctcact ggatcatgaa gttagacatc agtccttaga cgatgtgatc
1801 aagaattttg atgagaggaa tgagattatt gattttgaat tgagtgagga
1851 cacaattcga acatcatcag tgctagatac aaagtttagt gattgggtgg
1901 gacgacaant ccagatggga catacacttc cacattacag aaccgagggg
1951 cacttcatgg aatttacaag agcaactgct gttcaagtgg ctaatgacat
2001 tgcccatagc gaacacctag actttttagt aaggggagct gttgggtctg
2051 gaaagtcaac tgggttgcct gttcatctta gtgtagccgg atctgtgctt
2101 ttaattgaac caacaagacc actagcggag aacgttttca aacagctatc
2151 tagagaacca ttcttcaaga agccaacact gcgtatgcgt ggaaatagta
2201 tatttggctc ttctccaatc tccgtcgtga ctagcggatt tgcgttacac
2251 tacttcgcca acaatcgctc tcaattagct cagttcaact ttgtaatatt
2301 tgatgagtgc catgttctgg atccttccgc aatggcgttc cgcagtctgc
2351 tgagtgttta tcatcaagca tgcaaagtct taaaagtgtc agctactcca
2401 gtaggaagag aggttgaatt cacaacacag cagccagtca agttaatagt
2451 ggaggacaca ctgtctttcc aatcatttgt tgatgcacaa ggttctaaaa
2501 ctaatgctga tgttgttcag tttggttcaa acgtacttgt gtacgtgtcg
2551 agctacaatg aagttgatac cttggctaag ctcctaacag acaagaatat
2601 gatggtcaca aaggttgatg gcagaacaat gaagcacggt tgcctagaaa
2651 tngtcacaaa aggaaccagt gcgaggccac attttgttgt agcaaccaac
2701 ataattgaga atggagtgac tctggacata gacgtggttg tggattttgg
2751 gttgaaagtc tcaccgttct tggacattga caacaggagc attgcttaca
2801 ataaggtgag tgttagctat ggtgagagaa ttcaaaggct gggtcgtgtt
2851 ggacgcttca agaagggagt agcattgcgc attggacaca ctgagaaggg
2901 aattattgaa attccaagta tggtagctac tgaggcggct ctttcttgct
2951 ttgcatacaa tttgccagtg atgacaggag gcgtctcaac tagtctgatt
3001 ggcaattgta ctgtgcgcca ggtcaaaaca atgcagcaat ttgaattgag
3051 tcctttcttt atccagaatt tcgttgctca tgatggatca atgcatcctg
3101 tcatacatga cattcttaaa aagtataaac ttcgagattg tatgacacct
3151 ttgtgcgatc agtctatacc atacagggct tcgagtactt ggttatcggt
3201 tagtgaatat gagcggcttg gagtggcctt agaaattcca aagcaagtca
3251 aaagtgcatt tcatatcaaa gagatccctc ctaagctcca cgaaatgctt
3301 tgggaaacag ttgtcaagta caaagacgtt tgcttatttc caagcattcg
3351 agcatcatcc atcagcaaaa tcgcatacac attgcgtaca gacctcttcg
3401 ccatcccaag aactctaata ttggtggaga gattgcttga agaggagcga
3451 gtgaagcaga gccaattcag aagtctcatc gatgaagggt gctcaagcat
3501 gttttcaatt gtcaacttga ccaacactct cagagctaga tatgcaaaag
3551 attacaccgc agagaacata caaaaactng agaaagtgag aagtcaatta
3601 aaagaattct cgaatctgga tggttctgca tgtgaggaaa atttaataaa
3651 gaggtatgag tctttgcagt tcgttcatca ccaagctgcg acgtcacttg
3701 caaaggatct caagttgaag gggacttgga agaagtcatt aggggctaaa
3751 gatttgatca tagcaggtgc cgttgcaatt ggtggtatag gactcatata
3801 tagttggttc acacagtcag ttgagactgt gtctcaccaa gggaaaaata
3851 aatccaaaaa aatccaagcc ttgaagtttc gccatgctcg tgacaaaagg
3901 gctggctttg aaattgacaa caatgatgac acaatagagg aattctttgg
3951 ctctgcatac aggaaaaagg gaaaaggcaa aggtaccaca gttggtatgg
4001 gcaagtcaag caggaggttc atcaacatgt atgggtttga tccaacagag
4051 tactcattca tccaattcgt tgatccactc accggggctc aaatagaaga
4101 gaatgtctat gctgacatta gagatattca agagagattt agtgaagtgc
4151 gaaagaagat ggttgagaat gatgacgttg aaatgcaagc cttgggtagt
4201 aacacgacca ttcatgcata cttcaggaaa gattggtctg acaaagcttt
4251 gaagattgat ttaatgccac acaatccact caaagtttgt gacaagacaa
4301 atggcattgc caaatttcct gagagagagc tcgaactaag gcagactggg
4351 ccagctgtag aagtcgacgt gaaggacata ccagcacagg agggagnntc
4401 agtctagcta tcgctcatga gaggcttgag agacttcaac ccaattgccc
4451 aaacagtttg taggctgaaa gtatcagttg aatatgggac atcagagatg
4501 tacggttttg ggtttggagc atacataata gcgaaccacc atttgttcag
4551 gagttacaat ggttccatgg aggtgcgatc catgcacggt acattcaggg
4601 tgaagaatct acacagtttg agcgttctgc caattaaagg tagggatatc
4651 atcctcatca aaatgccgaa agatttccct gtctttccac aaaaattgca
4701 tttccgagct cctacacaga atgaaagagt ttgtttagtt ggaaccaact
4751 ttcaggagaa gtatgcatcg tcgatcatca cagaaacaag cactacttac
4801 aatataccag gcagcacatt ctggaagcat tggattgaaa cagataatgg
4851 acactgtgga ctaccagtgg tgagcaccgc cgatggatgt ctagtcggaa
4901 ttcacagttt ggcaaacaat aaacacacca cgaactacta ctcagccttc
4951 gatgaagact ttgaaagcaa gtacctccgg accaatgagc acaatgaatg
5001 ggtcaagtct tggatttata atccagacac agtgttgtgg ggcccgttga
5051 gacttaaaga cagcactccc aaagggttat tcaaaacaac aaagcttgtg
5101 caagatctaa tcgatcatga tgaagtggtg gagcaagcta agcattctgc
5151 gtggatgttt gaagccttga caggaaattt gcaagctgtc gcaacaatga
5201 agagccagtt agtgaccaag catgtagtta aaggagagtg tcgacacttc
5251 aaagaattcc tgactgtgga tgcagaagca gaggcnnnnn nattcttcag
5301 gcctttgatg gatgcgtatg ggaagagctt actgaataga gatgcgtata
5351 tcaaggacat aatgaagtat tcaaaaccta tagatgttgg tattgtggac
5401 tgtgatgcat ttgaagaagc catcaatagg gttatcatct acctgcaagt
5451 gcacggcttc aagaagtgtg catatgtcac tgacgagcaa gaaattttca
5501 aagcgctcaa catgaaagct gcagtcggag ccatgtatgg tggcaaaaag
5551 aaagactatt ttgagcattt cactgatgca gataaggaag aaatagtcat
5601 gcaaagctgt ctgcgattgt ataaaggctt gcttggcatt tggaatggat
5651 cattgaaggc agagctccgg tgtaaggaaa agatacttgc aaataagacg
5701 aggacattca ctgctgcacc tttagacact ttgctgggtg gtaaagtgtg
5751 tgttgatgac ttcaataatc aattttattc aaagaatatt gaatgctgtt
5801 ggacggttgg gatgactaag ttttatggtg gttgggataa actgctgcgg
5851 cgtttacctg annnnnnnnn nnnnnnnnnn nnnnnnnatg gctcacagtt
5901 tgaaagttca ctaactccat acttaatcaa tgctgttctc accatcagaa
5951 gcacatacat ggaagattgg gatgtggggt tgcaaatgtt gcgcaattta
6001 tacactgaga ttgtttacac acctatttca actccagatg gaacaattgt
6051 taagaagttc agaggaaata acagtggtca gccttctact gttgtggaca
6101 actctcttat ggtcgtcctt gccatgcact atgctctcat caaagaatgc
6151 attgagtttg aagagattga cagcacgtgc gtgttctttg tcaatggtga
6201 tgatttgctg attgctgtga atccggataa agagggcatt cttgacagat
6251 tgtcacaaca cttctcagat cttggtttga attatgattt tncgtcaaga
6301 acaagaaata aggaggagtt gtggtttatg tctcatagag gcctactgat
6351 tgagggcatg tacgtgccga aacttgaaga agaaaggatt gtgtccattc
6401 tccaatggga cagggcagac ttggctgaac acaggcttga ggcgatttgc
6451 gcagctatga tagagtcctg gggttattct gaactaacac accaaatcag
6501 gagattctac tcatggttat tgcaacagca accctttgca acaatagcgc
6551 aggaagggaa ggctccttat atagcaagca tggcattaag gaaattgtat
6601 atggataggg ctgtggatga ggaagagctg agagccttca ctgaaatgat
6651 ggtcgcatta gacgatgagt ttgaatttga ctcttatgaa gtataccatc
6701 aagcaaatga cacaattgat gcaggaggaa gcaacaagag agatgcaaga
6751 ccagagcaag gcagcatcca gtcaaacccg aacaaaggaa aagataagga
6801 tgtgaatgct ggtacatccg ggacacatac tgtgccaaga atcaaggcta
6851 tcacgtccaa aatgagaatg cccaaaagca agggagcaac cgtgctaaat
6901 ttagaacact tgcttgagta cgctccacaa caaattgata tttcaaatac
6951 tcgggcaact caatcacagt ttgatacgtg gtatgaggca gtgcggatgg
7001 catatgacat aggagaaact gagatgccaa ctgtgatgaa tgggcttatg
7051 gtttggtgca ttgaaaatgg aacctcgcca aatgtcaacg gagtttgggt
7101 tatgatggat gggaatgaac aagttgagta cccgttgaaa ccaatcgttg
7151 agaatgcaaa accaaccctt aggcaaatca tggcacattt ctcagatgtt
7201 gcagaagcgt atatagaaat gcgcaacaaa aaggaaccat atatgccacg
7251 atatggttta attcgaaatc tgcgggatgt gggtttagcg cgttatgcct
7301 ttgactttta tgaggtcaca tcacgaacac cagtgagggc tagggaagcg
7351 cacattcaaa tgaaggccgc agcattgaaa tcagcccaac ctcgactttt
7401 cgggttggac ggtggcatca gtacacaaga ggagaacaca gagaggcaca
7451 ccaccgagga tgtctctcca agtatgcata ctctacttgg agtcaagaac
7501 atgtgatngt agtgtctctc cggacgatat ataagtattt acatatgcag
7551 taagtatttt ggcttttcct gtactacttt tatcataatt aataatcagt
7601 ttgaatatta ctaatagata gaggtggcag ggtgatttcg tcattgtngg
7651 tgactctatc ttttaattcc gcattattaa gtcttagata aaagtgccgg
7701 gttgtcgttg ttgtggatga ttcatcgatt aggtgatgtt gcgattctgt
7751 cgtagcagtg actatgtctg gatctatctg ncttgga