Sequence of DPV Potato virus Y
Potato virus Y isolate GG517_128 polyprotein-like gene, complete sequence.
ACC No: JN936419
Dated: 2012-10-25 | Length: 9552 | CRC: -121556091
ID JN936419; SV 1; linear; genomic RNA; STD; VRL; 9552 BP.
XX
AC JN936419;
XX
DT 25-OCT-2012 (Rel. 114, Created)
DT 25-OCT-2012 (Rel. 114, Last updated, Version 1)
XX
DE Potato virus Y isolate GG517_128 polyprotein-like gene, complete sequence.
XX
KW .
XX
OS Potato virus Y
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-9552
RA Visser J.C., Bellstedt D.U.;
RT "The molecular and biological characterization of South African isolates of
RT PVYNTN: implications for pathogenicity determinants";
RL Unpublished.
XX
RN [2]
RP 1-9552
RA Visser J.C., Bellstedt D.U.;
RT ;
RL Submitted (26-OCT-2011) to the INSDC.
RL Department of Biochemistry, Stellenbosch University, Lab 165, JC Smuts
RL Building, Van der Bijl Street, Stellenbosch, Western Cape 7600, South
RL Africa
XX
FH Key Location/Qualifiers
FH
FT source 1. .9552
FT /organism="Potato virus Y"
FT /host="Solanum tuberosum"
FT /strain="Wilga"
FT /isolate="GG517_128"
FT /mol_type="genomic RNA"
FT /country="South Africa"
FT /collection_date="25-Oct-2005"
FT /db_xref="taxon:12216"
FT misc_feature 77. .9271
FT /note="similar to polyprotein"
XX
SQ Sequence 9552 BP; 2943 A; 1796 C; 2255 G; 2544 T; 14 other;
jn936419 Length: 9552 25-OCT-2012 Type: N Check: 8918 ..
1 attctcttaa cgatattgga aaccatttca actcaacaag taatttcatn
51 cacttccaac caattttaga tcctcaatgg caacttacat gtcaacaatc
101 tgtttcggtt cgtttgaatg caagctacca tactcacccg cctcttgcgg
151 gcatattgtg aaggaacgag aagtgctggc ttccgttgat cctttcgcag
201 atctggaaac acaacttagt gcacgattgc tcaagcaaga atatgctact
251 gttcgtgtgc tcaagaacgg tactcttacg taccgataca agactgatgc
301 ccagataacg cgcatccaga agaaactgga aaggaaggat agggaagaat
351 atcacttcca gatggcagct cctagtattg tgtcaaagat cactattgct
401 ggtggagagc caccttcaaa acttgaatca caagtgcgga ggggtgtcat
451 ccacacaact ccaaggatgc gcacagcaaa aacatatcac acgccaaagt
501 tgacagaggg acaaatgaac caccttatca agcaggtgaa gcaaattatg
551 tcaaccaaag gagggtctgt tcaactgatt agcaagaaaa gtacccatgt
601 tcactataaa gaagttttgg gatcacatcg cgcagttgtt tgcactgcac
651 atatgagagg tttacgacag agagtggact ttcggtgtga taaatggacc
701 gttgtgcgtc tacagcatct cgccaggacg gacaagtgga ataaccaagt
751 tcgtgctact gatctacgca agggcgatag tggagttata ttgagtaata
801 ctaatctcaa aggaagcttt gggagaagct cggagggcat attcatagtg
851 cgtgggtcgc acgaaggaaa aatctatgat gcacgttcca aggttactca
901 aggggttatg gattcaatgg ttcagttctc aagcgctgaa agcttttgga
951 agggattgga cggcaattgg gcacaaatga gatatcctac agatcataca
1001 tgtgtggcag gcttaccagt tgaagactgc ggcagagttg cagcgataat
1051 gacacacagt attttaccgt gctataagat aacctgccct acctgtgccc
1101 aacaatatgc caacttgcca gccagtgact tacttaagat attacacaag
1151 cacgcaagtg atggtttaaa tcgattgggg gcagacaaag atcgctttgt
1201 gcatgtcaaa aagttcttga caatcttaga gcacttaact gaaccggttg
1251 atctgagtct agaaattttc aatgaagtat tcaagtctat aggggataag
1301 caacaatcac ctttcaaaaa cctgaatatt ctgaataatt tctttttgaa
1351 aggaaaggaa aatacagctc gtgaatggca ggtggctcaa ttaagcttac
1401 ttgaattggc aagattccaa aagaacagaa cggataatat caagaaagga
1451 gacatctcgt tctttaggaa taaactatct gccaaagcaa attggaactt
1501 gtatctgtca tgtgataacc agctggataa gaatgcaaac ttcctgtggg
1551 gacagaggga atatcatgct aagcgatttt tctcgaacta tttcgaggaa
1601 attgatccag cgaagggcta ttcagcatat gaaaatcgtt tgcatccgaa
1651 tgggacaaga aaacttgcaa ttggaaacct aattgtacca cttgatctgg
1701 ctgagtttag gcggaagatg aaaggtgatt ataaaagaca gccaggggtg
1751 agtaagaagt gcacgagctc gaaggatgga gactacgtgt atccctgttg
1801 ttgcactaca cttgatgatg gctcagctgt tgaatcaaca ttttacccgc
1851 caactaagaa gcacctcgta ataggtaata gtggcgacca aaagtatgtt
1901 gacttaccaa aagggaattc tgagatgtta tatattgcca ggcaaggctt
1951 ctgttacatt aacattttcc tcgcgatgtt gattaacatt agtgaggaag
2001 atgcaaagga tttcactaag aaggttcgtg acgtgtgtgt gccaaagctt
2051 ggaacctggc caaccatgat ggatctggct acaacttgtg ctcaaatgaa
2101 aatattctac cctgatgttc atgatgcaga actgcctaga atactagtcg
2151 atcacgaaac gcagacatgc catgtggttg actcgtttgg ctcacaaaca
2201 actgggtatc atattttgaa agcatctagc gtgtcccaac ttattttgtt
2251 tgctaatgat gagttggagt ctgacattaa acattataga gttggtggtg
2301 ttcctaatgc atgccctgaa cttggaacca caatatcacc tttcagagaa
2351 ggaggagtta taatgtctga gtcggcagcg ctgaaactgc ttttgaaggg
2401 aatttttaga ccttaggtga tgagacagtt gctgttagat gagccttatc
2451 tgttgattct atcaatatta tcccctggca tactgatggc catgtacaat
2501 aatgggattt ttgaacttgc ggtaaggttg tggattaatg agaaacaatc
2551 catagctatg atagcatcgc tactatcagc tttagctcta cgagtntcag
2601 cggcagaaac actcgtcgca cagaggatta tcattgatgc tgcagctaca
2651 gacctccttg atgctacgtg tgatgggttc aacctacatc taacgtaccc
2701 tactgcattg atggtgttgc aagttgttaa gaatagaaat gaatgtgatg
2751 ataccctatt caaggcgggt tttccaagtt acaacacgag cgtcgtacag
2801 atcatggaaa aaaattatct aaatctcttg gacgatgctt ggaaagattt
2851 aacttggcgg gaaaaattat ccgcaacatg gtactcatac agagcaaaac
2901 gctctatcac tcggtacata aaacccacag gaagggcaga tttgaaaggg
2951 ttatacaaca tatcaccaca agcattcttg ggccgaggcg cccaggtggt
3001 caaaggcact gcctcaggat tgagcgagcg atttaataat tatttcaata
3051 ctaagtgtgt aaatatttca tcctttttta ttcgtagaat ctttaggcgt
3101 ttgccaactt tcgtcacttt tgttaactca ttattagtta ttagtatgtt
3151 aaccagcgta gtggcagtgt gtcaggcaat aattttagat cagaggaagt
3201 ataggagaga aatcgagttg atgcagatag agaagaatga gatcgtctgc
3251 atggagctat atgcaagttt acagcgcaaa cttgaacgcg atttcacatg
3301 ggatgagtac attgagtatt tgaagtcagt aaaccctcag atagttcagt
3351 ttgctcaagc gcagatggaa gaatatgatg tgcgacacca acgttccaca
3401 ccaggtgtta aaaatttgga acaagtggta gcatttatgg ctttagtcat
3451 catggtgttc gatgctgaaa ggagtgattg cgtgttcaaa actctcaata
3501 aatttaaggg tgtcctttcc tcactggacc atgaagttag acatcagtcc
3551 ttagacgatg tgatcaagaa ttttgatgag aggaatgaga ttattgattt
3601 tgaattgagt gaggacacaa ttcgaacatc atcagtgcta gatacaaagt
3651 ttagtgattg gtgggaccga caaatccaga tgggacatac acttccacat
3701 tacagaaccg aggggcactt catggaattc actagagcaa ctgctgtcca
3751 agtggctaat gacattgccc atagcgaaca cctagacttt ctagtaaggg
3801 gagctgttgg gtctggaaag tcaactgggt tgcctgttca tcttagtgta
3851 gccggatctg tgcttttaat tgaaccaacg cgaccactag cggagaacgt
3901 tttcaaacag ctatctagtg aaccattctt caagaagcca acactgcgta
3951 tgcgtggaaa tagtatattt ggctcttctc caatctccgt catgactagc
4001 gaatttgcgc tacactactt cgccaataat cgctctcaat tagctcagtt
4051 caactttgta atatttgatg agtgccatgt tctggatcct tccgcaatgg
4101 cgttccgtag tctgctgagt gtttatcatc aagcatgcaa agtattaaaa
4151 gtgtcagcta ctccagtggg aagagaggtt gaatttacaa cacagcaacc
4201 agtcaagtta ataggggagg acacactgtc tttccaatca tttgttgatg
4251 cacaaggttc taaaactaat gctgatgttg ttcaatttgg ttcaaacgta
4301 cttgtgtacg tgtcgagcta caatgaagtt gataccttgg ctaagctctt
4351 aacagacaag aatatgatgg tcacaaaggt tgatggcaga acaatgaagc
4401 acggttgcct agaaattgtc acaaaaggaa ccagtgcgag accacatttt
4451 gttgtagcaa ccaacataat tgagaatgga gtgactttgg acatagacgt
4501 ggttgtagat tttgggttga aagtctcacc gttcttggac attgacaata
4551 ggagcattgc ttacaataag gtgagtgtta gctatggtga gagaattcaa
4601 aggctgggtc gtgttggacg cttcaagaaa ggagtagcat tgcgcattgg
4651 acacactgag aagggaatta ttgaaattcc aagcatgatc gctacagagg
4701 cggctcttgc ttgctttgca tataacttgc cagtgatgac aggaggcgtc
4751 tcaactagtc tgattggtaa ttgtactgtg cgccaagtta aaacaatgca
4801 gcaatttgaa ttgagtccct tctttatcca gaatttcgtt gctcatgatg
4851 gatcaatgca tcctgtcata catgacattc ttaaaaagta taaacttcga
4901 gattgtatga cacctttgtg cgatcaatct ataccataca gggcatcgag
4951 cacttggtta tcggttagtg aatatgagcg acttggagtg gccttagaaa
5001 ttccaaagca agtcaaaatt gcattccata tcaaagagat ccctcctaag
5051 ctccacgaaa tgctttggga aacggttgtc aagtataaag acgtttgctt
5101 atttccaagc attcgagcat cgtccatcag caaaatcgca tacacattgc
5151 gtacagacct cttcgccatc ccaagaactc taatattggt ggagagactg
5201 cttgaagagg agcgagtgaa gcaaagccaa ttcagaagtc tcatcgacga
5251 aggatgctca agcatgtttt caattgtcaa cttgacaaac actctcagag
5301 ctagatatgc aaaagattac accgcagaga acatacaaaa actcgagaaa
5351 gtgagaagtc aattgaaaga attctcaaat ttggatggtt ctgcatgtga
5401 ggaaaattta ataaagaggt atgagtcttt gcagttcgtt catcaccaag
5451 ctgcgacgtc acttgcaaag gatctcaagt tgaaggggac ttggaagaag
5501 tcattagtgg ccaaagactt gatcatagca ggcgctgttg caattggtgg
5551 aataggactc atatatagtt ggttcacaca atcagttgag actgtgtctc
5601 accaagggaa aaataaatcc aaaagaattc aagccttgaa gtttcgccat
5651 gctcgtgaca aaagggctgg ctttgaaatt gacaacaatg atgacacaat
5701 agaggaattc tttggatctg catacaggaa aaagggaaaa ggtaaaggta
5751 ccacagttgg tatgggcaag tcaagcagga ggttcatcaa catgtatggg
5801 tttgatccaa cagagtactc attcatccaa ttcgttgatc cactcactgg
5851 ggcgcaaata gaagagaatg tctatgctga cattagagat attcaagaga
5901 gatttagtga agtgcgaaag aaaatggttg agaatgatga cattgaaatg
5951 caagccttgg gcagtaacac gaccattcat gcatacttca ggaaagattg
6001 gtctgacaaa gctttgaaga ttgatttatt gccacatccc ccactcaaag
6051 tttgtgacaa gacaaatggc attgccaaat ttcctgagag agagctcgaa
6101 ctaaggcaga ctgggccagc tgtagaagtc gacgtgaagg acataccagc
6151 acaggaggtg gagcatgaag ctaaatcgct catgagaggc ttgagagact
6201 tcaacccaat tgcccaaaca gtttgtaggc tgaaagtatc tgttgaatat
6251 gggacatcag agatgtacgg ttttggattt ggagcataca taatagcgaa
6301 ccaccatttg ttcaggagtt acaatggttc catggaggtg cgatccatgc
6351 acggtacatt cagggtgaag aatctacaca gtttgagcgt tctgccaatt
6401 aaaggtaggg atatcatcct catcaaaatg ccgaaagatt tccctgtctt
6451 tccacagaaa ttgcatttcc gagctcctac acagaatgaa agagtttgtt
6501 tagttggaac caactttcag gagaagtatg catcgtcgat catcacagaa
6551 acaagcacca cttacaatat accaggcagc acattcttga agcattggat
6601 tgaaacagat aatggacagt gtggactacc agtggtgagc accaccgatg
6651 gatgtctagt cggaattcac agtttggcaa acaacaaaca caccacgaac
6701 tactactcag ccttcgatga agattttgaa agcaagtatc tccgaaccaa
6751 tgagcacaat gaatgggtca agtcttggat ttataatcca gacacagtgt
6801 tgtggggccc gttgaaactt aaagacagca ctcccaaagg attattcaaa
6851 acaacaaagc ttgtgcaaga tctaatcgat catgatgtag tggtggagca
6901 agctaagcac tctgcgtgga tgtttgaagc cttgacagga aatttgcaag
6951 ctgtcgcaac aatgaagagc caattagtaa ccaagcatgt agttaaagga
7001 gagtgtcgac acttcaaaga attcctgact gtggatgcag aagcagaggc
7051 annnnnnttc ttcaggcctt tgatggatgc gtatgggaaa agcttgctga
7101 atagagatgc atacatcaag gacataatga agtattcaaa acctatagat
7151 gttggtatcg tggactgtga tgcatttgag gaagccatca atagggttat
7201 catctacctg caagtgcacg gcttcaagaa gtgcgcatac gtcactgacg
7251 agcaagaaat tttcaaagcg ctcaacatga angctgcagt cggagccatg
7301 tatggtggca aaaagaaaga ctattttgag catttcactg atgcagataa
7351 ggaagaaata gtcatgcaaa gctgtctgcg attgtataaa ggcttgcttg
7401 gcatttggaa tggatcattg aaggcagagc tccggtgtaa ggaaaagata
7451 cttgcaaata agacgaggac attcactgct gcacctttag acactttgct
7501 gggtggtaaa gtgtgtgttg atgacttcaa taatcaattt tattcaaaga
7551 atattgaatg ctgttggacg gttgggatga ctaagtttta tggtggttgg
7601 gataaattgc tgcggcgttt acctgagaat tnnngggtat actgtgatgc
7651 cgatggctca cagtttgata gttcactaac tccatactta atcaatgctg
7701 ttctcaccat tagaagcaca tacatggaag attgggatgt ggggttgcaa
7751 atgttgcgca atttatacac tgagattgtt tacacaccta tttcaactcc
7801 agatggaaca attgttaaga agttcagagg aaataacagt ggtcagcctt
7851 ctactgttgt ggacaactct cttatggtcg tccttgccat gcactatgct
7901 ctcatcaaag aatgcattga gtttgaagag attgacagca cgtgcgtatt
7951 ctttgtcaat ggtgatgatt tgctgattgc tgtgaatccg gataaagagg
8001 gcattcttga cagattgtca caacacttct cagatcttgg tttgaattat
8051 gatttctcgt caagaacaag aaataaggag gagttgtggt ttatgtctca
8101 tagaggccta ctgattgagg gcatgtacgt gccgaaactt gaagaagaaa
8151 ggattgtgtc cattctccaa tgggacagag cagacttggc tgaacatagg
8201 cttgaggcga tctgcgcagc tatgatagag tcctggggtt attctgaact
8251 aacgcaccaa atcaggagat tctactcatg gttattgcaa cagcaacctt
8301 ttgcaacaat agcgcaggaa gggaaggctc cttatatagc aagcatggca
8351 ttaaggaaat tgtatatgga tagggctgtg gatgaggaag agctgagagc
8401 cttcactgaa atgatggtcg cattagacga tgagtttgaa tttgactctt
8451 atgaagtata ccatcaagca aatgacacaa ttgatgcagg aggaagcagc
8501 aagaaagatg caagaccaga gcaaggcagc atccagtcaa acccgaacaa
8551 aggaaaagat aaggatgtga atgctggtac atctgggaca catactgtgc
8601 cgagaatcaa ggctatcacg tccaaaatga gaatgcccaa aagcaaggga
8651 gcaaccgtgc taaacttaga acacttgctt gagtatgctc cacaacaaat
8701 tgatatttca aatactcggg caactcaatc acagtttgat acgtggtatg
8751 aggcagtgcg gatggcatac gacataggag aaactgagat gccaactgtg
8801 atgaatgggc ttatggtttg gtgcattgaa aatggaacct cgccaaatgt
8851 caacggagtt tgggttatga tggatgggga tgaacaagtc gagtacccgt
8901 tgaaaccaat cgttgagaat gcaaaaccaa cccttaggca aatcatggca
8951 catttctcag atgttgcaga agcgtatata gaaatgcgca acaaaaagga
9001 accatatatg ccacgatatg gtttaattcg aaatctgcgg gatgtgggtt
9051 tagcgcgtta tgcctttgac ttttatgagg tcacatcacg aacaccagtg
9101 agggctaggg aagcgcacat tcaaatgaag gccgcagcat tgaaatcagc
9151 ccaacctcga cttttcgggt tggacggtgg catcagtaca caagaggaga
9201 acacagagag gcacaccacc gaggatgtct ctccaagtat gcatactcta
9251 cttggagtta agaacatgtg attgtagtgt ctctccggac gatatataag
9301 tatttacata tgcagtaagt attttggctt ttcctgtact acttttatca
9351 taattaataa tcagtttgaa tattactaat agatagaggt ggcagggtga
9401 tttcgtcatt gtnggtgact ctatctttta attccgcatt attaagtctt
9451 agataaaagt gccgggttgt cgttgttgtg gatgattcat cgattaggtg
9501 atgttgcgat tctgtcgtag cagtgactat gtctggatct atctgncttg
9551 ga