Sequence of DPV Potato virus Y
Potato virus Y isolate NTN-OVS polyprotein-like gene, partial sequence.
ACC No: JN936426
Dated: 2012-10-25 | Length: 8807 | CRC: 1574179223
ID JN936426; SV 1; linear; genomic RNA; STD; VRL; 8807 BP.
XX
AC JN936426;
XX
DT 25-OCT-2012 (Rel. 114, Created)
DT 25-OCT-2012 (Rel. 114, Last updated, Version 1)
XX
DE Potato virus Y isolate NTN-OVS polyprotein-like gene, partial sequence.
XX
KW .
XX
OS Potato virus Y
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-8807
RA Visser J.C., Bellstedt D.U.;
RT "The molecular and biological characterization of South African isolates of
RT PVYNTN: implications for pathogenicity determinants";
RL Unpublished.
XX
RN [2]
RP 1-8807
RA Visser J.C., Bellstedt D.U.;
RT ;
RL Submitted (26-OCT-2011) to the INSDC.
RL Department of Biochemistry, Stellenbosch University, Lab 165, JC Smuts
RL Building, Van der Bijl Street, Stellenbosch, Western Cape 7600, South
RL Africa
XX
FH Key Location/Qualifiers
FH
FT source 1. .8807
FT /organism="Potato virus Y"
FT /host="Solanum tuberosum"
FT /strain="NTN"
FT /isolate="NTN-OVS"
FT /mol_type="genomic RNA"
FT /country="South Africa"
FT /collection_date="03-Feb-2010"
FT /db_xref="taxon:12216"
FT misc_feature <1. .8536
FT /note="similar to polyprotein"
FT gap 2956. .3262
FT /estimated_length=307
FT gap 7424. .7732
FT /estimated_length=309
XX
SQ Sequence 8807 BP; 2539 A; 1460 C; 1896 G; 2220 T; 692 other;
jn936426 Length: 8807 25-OCT-2012 Type: N Check: 3876 ..
1 gtggantanc caagttcgtg ctactgatct acgcaagggc gatagtggag
51 ttatattgag taatactaat ctcaaaggac actttggaag aagctcggag
101 ggcctattca tagtgcgtgg gtcgcacgaa ggaaaaatct atgatgcacg
151 ttccaaggtt actcaagggg ttatggattc aatggttcag ttctcaagcg
201 ctgaaagctt ttggaaggga ttggacggca attgggcaca aatgagatat
251 cctacagatc atacatgtgt ggcaggctta ccagttgaag actgtggcag
301 agttgcagcg ataatgacac acagtatttt accgtgctat aagataacct
351 gccctacctg tgcccaacaa tatgccaact tgccagccag tgacttactt
401 aagatattac acaagcacgc aagtgatggt ttaaatcgat tgggggcaga
451 taaagatcgc tttgtgcatg tcaaaaagtt tttgacaatc ttagagcact
501 taactgaacc ggttgatctg agtctagaaa ttttcaatga agtattcaag
551 tctatagggg agaagcaaca atcacctttc aaaaacctga atattctgaa
601 taatttcttt ttgaaaggaa aggaaaatac agctcgtgaa tggcaggtgg
651 ctcacttaag cttacttgaa ttggcaagat tccaaaagaa cagaacggat
701 aatatcaaga aaggagacgt ctcgttcttt aggaataaac tatctgccaa
751 agcaaattgg aacttgtatc tgtcatgtga taaccagctg gataataatg
801 caaacttcct gtggggacag aaagaatatc atgctaagcg atttttctcg
851 aactatttca aggaaattga tccaccgaag ggctattcaa catatgaaat
901 tcttttgcat ccgaatggga caagaaaact tgcaattgga aacctaattg
951 taccacttga tctggctgag tttaggcgga agatgaaagg tgattataaa
1001 agacagccag gggtgagtaa gaagtgcacg agctcgaagg atggaaacta
1051 cgtgtatccc tgttgttgca caacacttga tgatggctca gctgttgaat
1101 caacatttta cccgccaact aagaagcacc tcgtaatagg taatagtggc
1151 gatcaaaagt atgttgactt accaaaaggg aattctgaga tgttatatat
1201 tgccaggcaa ggtttctgtt acattaacat tttcctcgcg atgttgataa
1251 acattagtga ggaagatgca aaggatttca ctaagaaggt tcgtgacatg
1301 tgtgtgccaa agcttggaac ctggccaacc atgatggatc tggctacaac
1351 ttgtgctcaa atgaaaatat tctaccctga tgttcatgat gcaaaactgc
1401 ctagaatact agtcgatcac aaaacgcaaa catgccatgt ggttgactcg
1451 tttggctcac aaacaactgg gtatcatatt ttgaaagcat ctagcgtgtc
1501 ccaacttatt ttgtttgcta atgatgagtt ggagtctgac attaagcact
1551 atagagttgg tggtattcct aatgcatgcc ctgaacttgg gtctacaata
1601 tcacctttca gagaaggagg agttataatg tgtgagtcgg cagcgctaaa
1651 actgctttta aagggaattt ttaaacctaa ggtgatgaga cagttgctgt
1701 tagatgagcc tttcctgttg attctttcaa tataatcccc tggcatactg
1751 atggctatgt acaataatgg gatttttgaa cttgcggtaa ggttgtggat
1801 taatgagaaa caatccatag ctatgatagc atcgctacta tcagctttag
1851 ccctacgagt gtcagcggca gaaacactcg tcgcacagag gattataatt
1901 gatactgcag ctacagatct ccttgatgct acgtgcgatg ggttcaacct
1951 acatctaacg taccccactg cgttgatggt gttgcaagtt gttaagaata
2001 gaaatgaatg tgatgatacc ctnttcaagg cgggttttcc aagttacaac
2051 acgagcgtcg tacagatcat ggaaaaaaat tatctaaatc tcttgaacga
2101 tgcttggaaa gatttaactt ggcgggaaaa attatccgca acatggtact
2151 catacagagc aaaacgctct atcactcggt acataaaacc cacaggaagg
2201 gcagatttga aagggttata caacatatca ccacaagcat tcttgggccg
2251 aggcgcccag gtggtcaaag gcactgcctc aggattgagc gagcgattta
2301 ataattattt caatactaag tgtgtgaata tttcatcctt tttcattcgt
2351 agaatcttta ggcgtttgcc aactttcgtc acttttgtta actcattatt
2401 agttattagt atgttaacca gcgtagtggc agtgtgtcag gcaataattt
2451 tagatcagag gaagtatagg agagaaatcg agttgatgca gatagagaag
2501 aatgagatcg tctgcatgga gctatatgca agtttacagc gcaaacttga
2551 acgcgatttc acatgggatg agtacattga gtatttgaag tcagtaaacc
2601 ctcagatagt tcagtttgct caagcgcaga tggaagaata tgatgtgcga
2651 caccagcgtt ccacaccagg tgttaaaaat ttggaacaag tggtagcatt
2701 tatggcttta gtcatcatgg tgttcgatgc tgaaaggagt gattgcgtgt
2751 tcaaaactct caataaattt aagggtgtcc tttcctcact ggaccatgaa
2801 gttagacatc agtccttaga cgatgtgatc aagaattttg atgagaggaa
2851 tgagactatt gattttgaat tgagtgagga cacaattcga acatcatcag
2901 tgctagatac aaagtttagt gattggtggg accgacaaat ccagatggga
2951 catacnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
3001 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
3051 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
3101 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
3151 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
3201 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
3251 nnnnnnnnnn nnagcggatt tgcgctacac tacttcgcca ataatcgctc
3301 tcaattagat cagttcaaat ttgtgatatt tgatgagtgc catgttttgg
3351 atccttccgc aatggcgttc cgcagtctgc tgagtgttta ccatcaagca
3401 tgcaaagtat taaaagtgtc agctactcca gtgggaagag aggttgaatt
3451 tacaacacag caaccagtca agttaatagt ggaggacaca ctgtctttcc
3501 aatcatttgt tgatgcacaa ggttctaaaa ctaatgctga tgttgttcag
3551 tttggttcaa acgtacttgt gtacgtgtcg agctacaatg aagttgacac
3601 cttggctaag ctcctaacag acaagaatat gatggtcaca aaggttgatg
3651 gcagaacaat gaagcacggt tgcctagaaa ttgtcacaaa aggaaccagt
3701 gcgagaccac attttgttgt agcaaccaac ataattgaga atggagtaac
3751 tttggacata gacgtggttg tagattttgg attgaaagtc tcaccgttct
3801 tggacattga caataggagc attgcttaca ataaggtgag tgttagctat
3851 ggtgagagaa ttcaaaggct gggtcgtgtt ggacgcttca agaaaggagt
3901 agcattgcgc attggacaca ctgagaaggg aattattgaa attccaagca
3951 tgatcgctac agaggcggct cttgcttgct ttgcatataa cttgccagtg
4001 atgacaggag gcgtctcaac tagtctgatt ggcaattgta ctgtgcgcca
4051 agttaaaaca atgcagcaat ttgaattgag tcccttcttt atccagaatt
4101 tcgttgccca cgatggatca atgcatcctg tcatacatga cattcttaaa
4151 aagtataaac ttcgagattg tatgacacct ttgtgcgatc agtctatacc
4201 atacagggca tcgagcactt ggttatcggt tagtgaatat gagcgacttg
4251 gagtggcctt agaaattcca aagcaagtca aaattgcatt ccatatcaaa
4301 gagatccctc ctaagctcca cgaaatgctt tgggaaacgg ttgtcaagta
4351 caaagatgtt tgcttatttc caagcattcg agcatcgtcc atcggcaaaa
4401 tcgcatacac attgcgtaca gacctcttcg ccatcccaag aactctaata
4451 ttggtggaga gactgcttga agaggagcga gtgaagcaga gccaattcag
4501 aagtctcatc gacgaaggat gctcaagcat gttttcaatt gtcaacttga
4551 caaacactct cagagctaga tatgcaaaag attacaccgc agagaatata
4601 caaaaacttg agaaagtgag aagccaattg aaagaattct caaatttgga
4651 tggttctgca tgtgaggaaa atttaataaa gaggtatgag tctttgcagt
4701 tcgttcatca ccaagctgcg acatcacttg caaaggatct caagttgaag
4751 gggacttgga agaagtcatt agtggccaaa gacttgatca tagcaggcgc
4801 tgttgcaatt ggtggaatag gactcatata tagttggttc acacaatcag
4851 ttgagactgt gtctcaccaa gggaaaaata aatccaaaag aattcaagcc
4901 ttgaagtttc gccatgctcg tgacaaaagg gctggctttg aaattgacaa
4951 taatgatgac acaatagagg aattctttgg atctgcatac aggaagaagg
5001 gaaaaggtaa aggcaccact gttggtatgg gcaagtcaag caggaggttt
5051 gttaatatgt atggatttga cccaacagaa tattcattca tccagttcgt
5101 tgatccgctc actggagctc aaattgaaga gaaagtctat gctgatatta
5151 gagacatcca agagcgcttt agtgatgtcc gcaagaaaat ggtagaggat
5201 gatgaaatcg aattgcaagc attgggcagc aacacaacca ttcatgctta
5251 cttcaggaaa gattggtctg acaaggctct aaaaattgat ttgatgccac
5301 acaacccact caaaatctgt gataaatcga atggcattgc taagtttcct
5351 gaaagagaac ttgagttgag acaaactggg ccagcaatag aggttgatgt
5401 gaaagacatt ccaaaacagg aagtggagca tgaagccaaa tcactcatga
5451 gaggtttaag ggatttcaat ccaattgctc aaacagtttg cagagtaaaa
5501 gtgtctgttg aatatggaac gtctgaaatg tatgggttcg gttttggtgc
5551 gtatattata gtaaaccacc atctattcaa gagtttcaat ggatccatgg
5601 aagtgcgatc aatgcatgga acattcagag tgaagaattt gcatagcttg
5651 agcgttttac cgatcaaagg cagagacatt atcatcataa agatgccaaa
5701 ggatttccct gttttcccac aaaaactgca cttccgagct ccagtgcaga
5751 atgagaggat ttgtttggtt ggaactaatt ttcaggaaaa acatgcatca
5801 tcaatcatca cagaaacgag tactacatac aatgtaccgg gcagcacttt
5851 ttggaagcat tggattgaaa caaatgatgg gcattgtgga ttaccagtag
5901 tgagtacagc tgatggttgt ctagttggaa tacacagctt ggcgaataat
5951 gtgcaaacca cgaattatta ttcagccttt gatgaggatt ttgaaagtaa
6001 gtatctccga actaatgagc ataatgagtg gaccaaatcg tgggtatata
6051 acccagatac tgtgttgtgg ggtccattaa agctcaagga gagtacccct
6101 aaaggcctgt ttaagacaac aagacttgta caggatttaa ttgatcatga
6151 tgttgttgta gagcaagcta aacattctgc gtggatgtat gaggctctaa
6201 cagggaattt gcaagctgtg gcgacaatga agagtcagct ggtgacaaag
6251 cacgtggtca aaggggagtg tcggcacttc aaagagttct taactgtgga
6301 ttcggaagca gaagctnnnn nnttcttcag gcctttgatg gatgcttatg
6351 ggaagagctt gttaaataga gaagcatata taaaggacat aatgaaatac
6401 tcaaagccta ttgatgttgg aatagtagac tgtgatgctt ttgaagaggc
6451 tatcaatagg gttatcattt atctgcaagt gcatggcttc cagaaatgca
6501 attacatcac cgatgagcag gaaatcttca aagctctcaa tatgaaagct
6551 gctgtcggag ctatgtatgg aggcaagaag aaagactact tcgagcattt
6601 tactgaggcg gataaagagg aaattgttat gcaaagttgc cttcnnnnnn
6651 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
6701 nnnnnnnaga agatacttgc aaataagaca aggacattca ctgctgcacc
6751 tttagatact ctactgggtg gaaaggtgtg cgttgatgat tttaataatc
6801 aattctactc gaagaacatt gaatgctgct ggactgttgg aatgactaag
6851 ttttatggag gttgggacag attgcttcgg cgtctacctg aaaattnnng
6901 ggtgtactgc gatgccgatg gttcacaatt cgatagttca ctcaccccat
6951 acctaattaa tgctgttctc atcatcagaa gcacatacat ggaagattgg
7001 gacttggggt tgcaaatgtt gcgcaattta tacacagaaa taatttacac
7051 accaatctca actccagatg gaacaattgt caagaagttt agaggtaata
7101 atagcggtca accttctacc gttgtggata attctctcat ggttgtcctt
7151 gctatgcatt acgctcttat taaggagtgc gttgagtttg aagaaatcga
7201 cagcacgtgt gtattctttg ttaatggtga tgacttattg attgctgtga
7251 atccggagaa agagagcatt ctcgatagaa tgtcacaaca tttctcagat
7301 cttggtttga actatgattt ttcgtcgaga acaagaagga aggaggaatt
7351 gtggttcatg tcccatagag gcctgctaat cgagggtatg tacgtgccaa
7401 agcttgaaga agagagaatt gtannnnnnn nnnnnnnnnn nnnnnnnnnn
7451 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
7501 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
7551 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
7601 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
7651 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
7701 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnggaaatga cacaatcgat
7751 gcaggaggaa gcactaagaa ggatgcaaaa caagagcaag gtagcattca
7801 accaaatctc aacaaggaaa aggaaaagga cgtgaatgtt ggaacatctg
7851 gaactcatac tgtgccacga attaaagcta tcacgtccaa aatgagaatg
7901 cccaagagta aaggtgcaac tgtactaaat ttggaacact tactcgagta
7951 tgctccacag caaattgaca tctcaaatac tcgagcaact caatcacagt
8001 ttgatacgtg gtatgaagcg gtacaacttg catacgacat aggagaaact
8051 gaaatgccaa ctgtgatgaa tgggcttatg gtttggtgca ttgaaaatgg
8101 aacctcgcca aacatcaacg gagtttgggt tatgatggat ggagatgaac
8151 aagtcgaata cccactgaaa ccaatcgttg agaatgcaaa accaacactt
8201 aggcaaatca tggcacattt ctcagatgtt gcagaagcgt atatagaaat
8251 gcgcaacaaa aaggaaccct atatgccccc atatggttta gtttgtaatt
8301 tgcgcgatgg aagtttggct cgctatgctt ttgactttta tgaggtcaca
8351 tcacgaacac ccgtgagggc tagggaagcg cacattcaaa tgaaggccgc
8401 agcattgaaa tcagcccaat ctcgactttt cgggttggac ggtggcatca
8451 gtacacaaga ggagaacaca gagaggcaca cccccgagga tgtctctcca
8501 agtatgcata ctctacttgg agtcaagaac atgtgattgt agtgtctctc
8551 cggacgatat ataagtattt acatatgcag taagtatttt ggcttttcct
8601 gtactacttt tatcataatt aataatcagt ttgaatatta ctaatagata
8651 gaggtggcag ggtgattttg tcattgtngg tgactctatc ttttaattcc
8701 gcattattaa gtcttagata aaagtgccgg gttgtcggtg ttgtggatga
8751 ttcatcgatt aggtgatgtt gcgattctgt cgtagcagtg actatgtctg
8801 gatatga