Sequence of DPV Potato virus Y
Potato virus Y isolate SS082A_88 polyprotein-like gene, partial sequence.
ACC No: JN936433
Dated: 2012-10-25 | Length: 9457 | CRC: -1568907679
ID JN936433; SV 1; linear; genomic RNA; STD; VRL; 9457 BP.
XX
AC JN936433;
XX
DT 25-OCT-2012 (Rel. 114, Created)
DT 25-OCT-2012 (Rel. 114, Last updated, Version 1)
XX
DE Potato virus Y isolate SS082A_88 polyprotein-like gene, partial sequence.
XX
KW .
XX
OS Potato virus Y
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-9457
RA Visser J.C., Bellstedt D.U.;
RT "The molecular and biological characterization of South African isolates of
RT PVYNTN: implications for pathogenicity determinants";
RL Unpublished.
XX
RN [2]
RP 1-9457
RA Visser J.C., Bellstedt D.U.;
RT ;
RL Submitted (26-OCT-2011) to the INSDC.
RL Department of Biochemistry, Stellenbosch University, Lab 165, JC Smuts
RL Building, Van der Bijl Street, Stellenbosch, Western Cape 7600, South
RL Africa
XX
FH Key Location/Qualifiers
FH
FT source 1. .9457
FT /organism="Potato virus Y"
FT /host="Solanum tuberosum"
FT /strain="N"
FT /isolate="SS082A_88"
FT /mol_type="genomic RNA"
FT /country="South Africa"
FT /collection_date="01-Jun-2005"
FT /db_xref="taxon:12216"
FT misc_feature <1. .9155
FT /note="similar to polyprotein"
XX
SQ Sequence 9457 BP; 2946 A; 1707 C; 2219 G; 2575 T; 10 other;
jn936433 Length: 9457 25-OCT-2012 Type: N Check: 4885 ..
1 aatgcaaact tccatactca cccgctcctt ttgggctagt tgcggggaaa
51 cgagaagttt caaccaccac tgaccccttc gcaagtttgg agatgcagct
101 tagtgcgcga ttacgaaggc aagagtttgc aactattcga acatccaaga
151 atggtacttg catgtatcga tacaagactg atgtccagat tgcgcgcatc
201 caaaagaagc gtgaggaaag agaaagagag gaatataatt tcctaatggc
251 tgaggcaagt gttgtgtcga agatcactat tgctggtgga gagccacctt
301 caaaacttga atcacaagtg cggaggggtg tcatccacac aactccaagg
351 atgcgcacag caaaaacata tcacacgcca aagttgacag agggacaaat
401 gaaccaccta atcaagcagg tgaagcaaat tatgtcaacc aaaggagggt
451 ctgttcaact gattagcaag aaaagtaccc atgttcatta taaagaagtt
501 ttgggatcac atcgcgcagt tgtttgcact gcacatatga gaggtttacg
551 aaagagagtg gactttcggt gtgataaatg gaccgttgtg cgtctacagc
601 atctcgccag gacggacaag tggactaacc aagttcgtgc tactgatcta
651 cgcaagggcg atagtggagt tatattgagt aatactaatc tcaaaggaaa
701 ctttgggaga agctcggagg gcctattcat agtgcgtggg tcgcacgaag
751 gaaaaatcta tgatgcacgt tccaaggtta ctcaaggggt tatgaattca
801 atggttcagt tctcaagcgc tgaaagcttt tggaagggat tggacggcaa
851 ttgggcacaa atgagatatc ctacagatca tacatgtgtg gcaggcttac
901 cagttgaaga ctgtggcaga gttgcagcga taatgacaca cagtatttta
951 ccgtgctata agataacctg ccctacctgc gcccaacaat atgccaactt
1001 gccagccagt gacttactta agatattaca caagcacgca agtgatggtc
1051 taaatcgatt gggggcagac aaagatcgct ttgtgcatgt caaaaagttc
1101 ttgacaatct tagagcactt aactgaaccg gttgatctga gtctagaaat
1151 tttcaatgaa gtgttcaagt ctatagggga gaagcaacaa tcacctttca
1201 aaaacctgaa tattctgaat aatttctttt tgaaaggaaa ggaaaataca
1251 gctcgtgaat ggcaggtggc tcaattaagc ttacttgaat tggcaagatt
1301 ccaaaagaac agaacggata atatcaagaa aggagacatc tcgttcttta
1351 ggaataaact atctgccaaa gcaaattgga acttgtatct gtcatgtgat
1401 aaccagctgg ataagaatgc aaacttcctg tggggacaga gggaatatca
1451 tgctaagcga tttttctcga actatttcga ggaaattgat ccagcgaagg
1501 gctattcagc atacgaaaat cgtttgcatc cgaatgggac aagaaaactt
1551 gcaattggaa acctaattgt accacttgat ctggctgagt ttaggcggaa
1601 gatgaaaggt gattataaaa gacagccagg ggtgagtaag aagtgcacga
1651 gctcgaagga tggaaactac gtgtatccct gttgctgcac cacactcgat
1701 gatggctcag ctgttgaatc aacattttac ccgccaacta agaaacacct
1751 cgtaataggt aatagtggcg accaaaagta tgttgactta ccaaaaggga
1801 attctgagat gttatatatt gccaggcaag gcttctgcta cattaacatt
1851 ttcctcgcga tgttgattaa cattagtgag gaagatgcaa aggatttcac
1901 taagaaggtt cgtgacatgt gtgtgccaaa gcttggaacc tggccaacca
1951 tgatggatct ggctacaact tgtgctcaaa tgaaaatatt ctaccctgat
2001 gttcatgatg cagaactgcc tagaatacta gtcgatcacg aaacgcagac
2051 atgccatgtg gttgactcgt ttggctcaca aacaactggg tatcatattt
2101 tgaaagcatc tagcgtgtcc caacttattt tgtttgccaa tgatgagttg
2151 gagtctgaca ttaagcacta tagagttggt ggtattcctg gagcatgccc
2201 tgagcttggg tccacaatat caccttttag agaaggagga atcataatgt
2251 ctgagtcagc agcgctaaaa ctgctcctaa agggaatttt taggcccaaa
2301 gtgatgaagc aattgctact ggatgaacca tatttgctca ttttatcgat
2351 attatctcct ggtatactta tggctatgta caacaatggg atatttgagt
2401 tggcggtgaa gttgtggatc aatgagaaac aatctatagc catgatagca
2451 tcgttattgt ccgccttggc tttacgagtg tcagcagcag aaacactcgt
2501 tgcacagagg attataattg acacggcagc aacagatctt ctcgatgcta
2551 cgtgtgatgg attcaattta aatctgacat atcccactgc actcatggtg
2601 ttgcaagttg ttaagaacag aaatgaatgt gatgatacgt tgtttaaagc
2651 aggtttttca cattacaaca tgagtgtcgt gcagattatg gaaaaaaatt
2701 atctaagcct cttgggcgat gcttggaaag atttaacctg gcgagaaaaa
2751 ttatccgcaa catggcactc atacaaagca aagcgctcta tcactcagtt
2801 cataaaaccc ataggcaaag cagatttaaa agggttgtac aacatatcac
2851 cgcaagcatt cttgggtcag ggcgtacaga gagtcaaagg caccgcctca
2901 gggttgaatg agcgactcaa taattatatt aatactaagt gtgtaaatat
2951 ttcatccttt ttcattcgta gaattttccg gcgcttgcca acttttgtaa
3001 ctttcattaa ttcattatta gttattagta tgctaactag tgtagtagca
3051 gtgtgtcaag caataattct agatcaaagg aagtatagaa aagaaattga
3101 gttgatgcag atggagaaga atgaaattgt ttgtatggag ttgtatgcga
3151 gtctgcagcg caaacttgag cgtgaattca catgggatga atatatggaa
3201 tatttgaaat ctgtgaatcc ccaaatagtt caattcgcgc aagctcaaat
3251 ggaagaatat aatgtgcgac atcagcgctc cacaccaggt gttaagaatt
3301 tagagcaggt ggtagcattt ataactctaa ttatcatgat gtttgatgct
3351 gaaaggagcg actgtgtatt taagactctc aacaaattca aaggcatcgt
3401 ttcttcaatg gatcatgaag ttagacacca gtccttggat gatgtaatca
3451 agaatttcga tgaaaggaac gaagttattg attttgagct aaatgaggat
3501 acaattaaaa catcatcagt gttggatacg aagtttagcg actggtggga
3551 tcgtcaaatc caaatgggac acacacttcc ccattataga actgagggac
3601 acttcatgga attcacaagg gcaactgctg tacaagtggc caacgacatc
3651 gcgcatagtg agcacctaga ctttctagtg aggggagctg ttgggtctgg
3701 aaaatccact ggactgcctg tccatctcag tgcagctgga tccgtgcttt
3751 tgatagaacc aactcgacca cttgcagaaa acgtgttcaa gcaattatcc
3801 agtgaaccgt ttttcaagaa accaacactg cgcatgcgag gaaatagtgt
3851 gtttggttcc tctccaatct ccatcatgac tagcggcttt gcattgcact
3901 actatgctaa taatcgctct cagctaactc agtttaattt cataattttt
3951 gatgaatgtc atgttttaga tccttctgca atggcatttc gtagcttgtt
4001 aagtgtgtat caccaaacat gcaaagtgtt aaaggtgtca gctactccag
4051 tggggaggga ggtcgagttc acaacacaac aaccagttaa attggtggtt
4101 gaggatacac tttcattcca atcttttgtt gatgcgcaag gctcaaaaac
4151 caatgccgac gttgttcagc atggttcgaa catactcgtg tgtgtgtcga
4201 gttacaatga agtggataca ttagccaagc ttctaacaga taggaatatg
4251 gtagtctcaa aagttgatgg cagaacaatg aagcacggat gcttggaaat
4301 tgtaacgaaa gggactagtg caaagccaca ttttgtcgta gcaaccaaca
4351 ttattgaaaa tggagtaact ttagatatag atgtagttgt agattttggg
4401 cttaaagtct caccgttttt agatattgac aataggagca ttgcatacaa
4451 taagattagt gttagctatg gtagaagaat tcagaggttg ggccgtgttg
4501 ggcgctttaa gaagggagtg gcattgcgta ttggacacac cgaaaaggga
4551 attattgaga ttccaagtat gattgctagt gaagctgcgc ttgcgtgctt
4601 tgcatacaat ttgccagtaa tgacaggggg tgtttcaact agcctcattg
4651 gcaattgtac tgttcgtcaa gttaaaacta tgcaacaatt tgagctgagt
4701 ccattcttta tacaaaattt tgttgcccat gatggatcaa tgcatcctgt
4751 catacatgac attcttaaga agtataaact gcgagattgt atgacgccct
4801 tgtgtgatca atccatacct tacagagcct cgagcacttg gttgtctgtt
4851 agtgagtacg aacgactcgg agtagttttg gacattccaa aacagatcaa
4901 gattgcattc cacatcaagg acatccctcc taagttgcat gaaatgcttt
4951 gggaaacagt tatcaaatat aaggatgttt gtttgtttcc aagtattcgg
5001 gcttcatcca ttagcaaaat tgcatacaca ctgcgcactg atctttttgc
5051 aattcccaga accctaattt tagttgaaag attgctcgag gaggaacgag
5101 tgaaacagag tcaattcaga agtcttattg atgaaggatg ctcaagcatg
5151 ttttcaattg tcaatttaac aaacactctt agagctagat atgcaaagga
5201 ttacactgca gaaaacatac agaagctcga gaaagtgagg agtcagttaa
5251 aggagttctc aaatttaaat ggctctgcat gcgaggagaa cttaatgaag
5301 aggtatgaat ctctacagtt tgtgcaccat caagcaacaa cttcactcgc
5351 aaaggatttg aagttgaaag gagtttggaa gaagtcatta gttgtgcagg
5401 acttactcat agcgggtgcc gttgctattg gtggaatagg gctcatctat
5451 agtgggttta ctcaatcagt tgaaactgtg tctcaccagg gcaagaacaa
5501 atccaaaaga attcaagcat tgaagtttcg acacgcccgc gataagaggg
5551 ctggctttga aattgataac aatgacgata caatagaaga attctttgga
5601 tctgcataca ggaagaaggg aaaaggtaaa ggcaccactg ttggtatggg
5651 caagtcaagc aggaggtttg ttaatatgta tggatttgac ccaacagaat
5701 attcattcat ccagttcgtt gatccgctca ctggagctca aattgaagag
5751 aacgtctatg ctgatattag agacatccaa gagcgcttta gtgatgtccg
5801 caagaaaatg gtagaggatg atgaaatcga attgcaagca ttgggcagca
5851 acacaaccat tcatgcttac ttcaggaaag attggtctga caaggctctt
5901 aaaattgatt tgatgccaca caacccactc aaaatctgtg ataaatcgaa
5951 tggcattgct aagtttcctg aaagagaact tgagttgagg caaactgggc
6001 cagcagtaga ggttgatgtg aaagacattc caaaacagga agtggagcat
6051 gaagccaaat cactcatgag aggtttaagg gatttcaatc caattgctca
6101 aacagtttgc agagtaaaag tgtctgttga atatggaacg tctgaaatgt
6151 atgggctcgg ttttggtgcg tatattatag taaaccacca tctattcaag
6201 agtttcaatg gatccatgga agtgcgatca atgcatggaa cattcagagt
6251 gaagaatttg catagcctga gcgttttacc gatcaaaggc agagacatta
6301 tcatcataaa gatgccaaag gatttccctg ttttcccaca aaaactgcac
6351 ttccgagctc cagtgcagaa tgagaggatt tgtttggttg gaactaattt
6401 tcaagaaaaa catgcatcat caatcatcac agaaacgagt actacataca
6451 atgtaccggg cagcactttt tggaagcatt ggattgaaac aaatgatggg
6501 cattgtggat taccagtagt gagtacagct gatggatgtc tagttggaat
6551 acacagcttg gcgaataatg tgcaaaccac gaattattat tcagcctttg
6601 atgaggattt tgaaagtaag tatctccgaa ctaatgagca taatgagtgg
6651 accaaatcgt gggtatataa cccagatact gtgttgtggg gtccattgaa
6701 gctcaaggag agtaccccta aaggcctgtt taagacaaca aaacttgtac
6751 aggatttaat tgatcatgat gttgttgtag agcaagctaa acattctgcg
6801 tggatgtatg aggctctaac agggaatttg caagctgtgg cgacaatgaa
6851 gagtcagcta gtgacaaagc acgtggtcaa aggggagtgt cggcacttca
6901 aagagttctt aactgtggac tcggaagcag aagctnnnnn nttcttcagg
6951 cctttgatgg atgcttatgg gaagagcttg ttaaatagag aagcatatat
7001 aaaggacata atgaaatact caaagcctat tgatgttgga atagtagact
7051 gtgatgcttt tgaagaggct atcaataggg ttatcattta tctgcaagtg
7101 catggcttcc agaaatgcaa ttacatcacc gatgagcagg aaattttcaa
7151 agctctcaat atgaaagctg ctgtcggagc tatgtatgga ggcaagaaga
7201 aagactactt cgagcatttt actgaggcgg ataaagagga aattgttatg
7251 caaagttgcc ttcgattgta caagggctcg cttggcatat ggaatggatc
7301 attgaaagca gaacttcggt gcaaagagaa gatacttgca aataagacaa
7351 ggacattcac tgctgcacct ttagatactc tactgggtgg aaaggtgtgc
7401 gttgatgatt ttaataatca gttctactca aagaacattg aatgctgctg
7451 gactgttgga atgactaagt tttatggagg ttgggacaaa ttgcttcggc
7501 gtctacctga aaattnnngg gtgtactgcg atgccgatgg ttcacaattc
7551 gatagttcac tcaccccata cctaattaat gctgttctca tcatcagaag
7601 cacatacatg gaagattggg acttggggtt gcaaatgttg cgcaatttgt
7651 acacagagat aatttacaca ccaatctcaa ctccagatgg aacaattgtc
7701 aagaagttta gaggtaataa tagcggtcaa ccttctaccg ttgtggataa
7751 ttctctcatg gttgtccttg ctatgcatta cgctctcatt aaggagtgcg
7801 ttgagtttga agaaatcgac agcacgtgtg tattctttgt taatggtgat
7851 gacttattga ttgctgtgaa tccggagaaa gagagcattc tcgatagaat
7901 gtcacaacat ttctcagatc ttggtttgaa ctatgatttt tcgtcgagaa
7951 caagaaggaa ggaggaattg tggttcatgt cccatagggg cctgctaatc
8001 gagggtatgt acgtgccaaa gcttgaagaa gagagaattg tatccattct
8051 gcaatgggat agagctgatc tgccagagca cagattataa gcgatttgtg
8101 cagcaatgat agaatcctgg ggttattttg agttaaccca ccaaatcagg
8151 agattctact catggttgtt gcaacagcaa cctttttcaa cgatagcaca
8201 ggaaggaaaa gctccatacg gggcgagtat ggcattgaag aagttgtaca
8251 tgtataggac aataaatgag gaggaactga aggctttcac tgaaatgatg
8301 gttgccttgg atgacaattt tgagtgcgat acttatgaag tgcaccatca
8351 aggaaatgac acaatcgatg caggaggaag cactaagaag gatgcaaaac
8401 aagagcaagg tagcattcaa ccaaatctca acaaggaaaa ggaaaaggac
8451 gtgaatgttg gaacatctgg aactcatact gtgccacgaa ttaaagctat
8501 cacgtccaaa atgagaatgc ccaggagtaa aggcgcaact gtactaaatt
8551 tggaacactt actcgagtat gctccacagc aaattgacat ctcaaatact
8601 cgggcaactc aatcacagtt tgatacgtgg tatgaagcag tacaacttgc
8651 atacgacata ggagaaactg aaatgccaac tgtgatgaat gggcttatgg
8701 tttggtgcat tgaaaatgga acctcgccaa acatcaacgg agtttgggtt
8751 atgatggatg gagatgaaca agtcgaatac ccactgaaac caatcgttga
8801 gaatgcaaaa ccaacactta ggcaaatcat ggcacatttc tcagatgttg
8851 cagaagcgta tatagaaatg cgcaacaaaa aggaaccata tatgccacga
8901 tatggtttag ttcgtaatct gcgcgatgga agtttggctc gctatgcttt
8951 tgacttttat gaagttacat cacggacacc agtgagggct agagaggcac
9001 acattcaaat gaaggccgca gctttaaaat cagctcaatc tcgacttttc
9051 ggattggatg gtggcattag tacacaagag gaaaacacag agaggcacac
9101 caccgaggat gtttctccaa gtatgcatac tctacttgga gtcaagaaca
9151 tgtgattgta gtgtctttcc ggacgatata tagatattta tgtttgcagt
9201 aagtattttg gcttttcctg tactactttt atcgaaatta ataatcagtt
9251 tgaatattac tggcagatag gggtggtata gcgattccgt cgttgtnagt
9301 gaccttagct gtcgtttctg tattattatg ttttgtataa aagtgccggg
9351 ttgttgttgt tgtggctgat ctatcgatta ggtgatgttg cgattttgtc
9401 gtagcagtga ctatgtctgg atatatcttg cttgggtgat gctgtgattc
9451 tgtcata