Sequence of DPV Potato virus Y
Potato virus Y isolate SS607_31 polyprotein-like gene, partial sequence.
ACC No: JN936436
Dated: 2012-10-25 | Length: 9434 | CRC: -2039972155
ID JN936436; SV 1; linear; genomic RNA; STD; VRL; 9434 BP.
XX
AC JN936436;
XX
DT 25-OCT-2012 (Rel. 114, Created)
DT 25-OCT-2012 (Rel. 114, Last updated, Version 1)
XX
DE Potato virus Y isolate SS607_31 polyprotein-like gene, partial sequence.
XX
KW .
XX
OS Potato virus Y
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-9434
RA Visser J.C., Bellstedt D.U.;
RT "The molecular and biological characterization of South African isolates of
RT PVYNTN: implications for pathogenicity determinants";
RL Unpublished.
XX
RN [2]
RP 1-9434
RA Visser J.C., Bellstedt D.U.;
RT ;
RL Submitted (26-OCT-2011) to the INSDC.
RL Department of Biochemistry, Stellenbosch University, Lab 165, JC Smuts
RL Building, Van der Bijl Street, Stellenbosch, Western Cape 7600, South
RL Africa
XX
FH Key Location/Qualifiers
FH
FT source 1. .9434
FT /organism="Potato virus Y"
FT /host="Solanum tuberosum"
FT /strain="NTN"
FT /isolate="SS607_31"
FT /mol_type="genomic RNA"
FT /country="South Africa"
FT /collection_date="12-Feb-2010"
FT /db_xref="taxon:12216"
FT misc_feature <1. .9183
FT /note="similar to polyprotein"
FT gap 6963. .7148
FT /estimated_length=186
FT gap 8072. .8379
FT /estimated_length=308
XX
SQ Sequence 9434 BP; 2768 A; 1678 C; 2083 G; 2405 T; 500 other;
jn936436 Length: 9434 25-OCT-2012 Type: N Check: 1304 ..
1 accttaacaa tccagtttgg ttccattgan tgcaaacttc catactcacc
51 cgctcctttt gggctagttg cggggaaacg agaagtttca accaccactg
101 accccttcgc aagtttggaa atgcaactta gtgcgcgatt acgaaggcaa
151 gagtttgcaa ctattcgaac atccaagaat ggtacttgca tgtatcgata
201 caagactgat gtccagattg cgcgcattca aaagaagcgc gaggagagag
251 aaagagagga atataatttc caaatggctg cgtcaagtgt tgtgtcgaag
301 atcactattg ctggtggaga gccaccttca aaacttgaat cacaagtgcg
351 gaggggtgtt atccacacaa ctccaaggat gcgcacagca aaaacatatc
401 acacgccaaa gttgacagag ggacaaatga accaccttat taagcaggtg
451 aagcaaatta tgtcaaccaa aggagggtct gtccaactga ttagcaagaa
501 aagtacccat gttcactata aagaagtttt ggggtcacat cgcgcagttg
551 tttgcactgc acatatgaga ggtttacgaa agagagtgga ctttcggtgt
601 gataaatgga ccgttgtgcg cctacagcat ctcgccagga cggacaagtg
651 gactaaccaa gttcgtgcta ctgatctacg caagggcgat agtggagtta
701 tattgagtaa tactaatctc aaaggacact ttggaagaag ctcggagggc
751 ctattcatag tgcgtgggtc gcacgaagga aaaatctatg atgcacgttc
801 caaggttact caaggggtta tggattcaat ggttcagttc tcaagcgctg
851 aaagcttttg gaagggattg gacggcaatt gggcacaaat gagatatcct
901 acagatcata catgtgtggc aggcttacca gttgaagact gtggcagagt
951 tgcagcgata atgacacaca gtattttacc gtgctataag ataacctgcc
1001 ctacctgtgc ccaacaatat gccaacttgc cagccagtga cttacttaag
1051 atattacaca agcacgcaag tgatggttta aatcgattgg gggcagacaa
1101 agatcgcttt gtgcatgtca aaaagttctt gacaatctta gagcacttaa
1151 ctgaaccggt tgatctgagt ctagaaattt tcaatgaagt attcaagtct
1201 ataggggaga agcaacaatc acctttcaaa aacctgaata ttctgaataa
1251 tttctttttg aaaggaaagg aaaatacagc tcgtgaatgg caggtggctc
1301 aattaagctt acttgaattg gcaagattcc aaaagaacag aacggataat
1351 atcaagaaag gagacatctc gttctttagg aataaactat ctgccaaagc
1401 aaattggaac ttgtatctgt catgtgataa ccagctggat aagaatgcaa
1451 acttcctgtg gggacagaga gaatatcatg ctaaccgatt tttctcgaac
1501 tatttcgagg aaattgatcc agcgaagggc tattcagcat atgaaaatcg
1551 tttgcatccg aatgggacaa gaaaacttgc aattggaaac ctaattgtac
1601 cacttgatct ggctgagttt aggcggaaga tgaaaggtga ttataaaaga
1651 cagccagggg tgagtaagaa gtgcacgagc tcgaaggatg gaaactacgt
1701 gtatccctgt tgttgcacta cacttgatga tggctcagct gttgaatcaa
1751 cattttaccc cccaactaag aagcacctcg taataggtaa tagtggcgat
1801 caaaagtatg ttgacttacc aaaagggaat tctgagatgt tatatattgc
1851 caggcaaggt ttctgttaca ttaacatttt cctcgcgatg ttgataaaca
1901 ttagtgagga agatgcaaag gatttcacta agaaggttcg tgacatgtgt
1951 gtgccaaagc ttggaacctg gccaaccatg atggatctgg ctacaacttg
2001 tgctcaaatg aaaatattct accctgatgt tcatgatgca gaactgccta
2051 gaatactagt cgatcacgaa acgcagacat gccatgtggt tgactcgttt
2101 ggctcacaaa caactgggta tcatattttg aaagcatcta gcgtgtccca
2151 acttattttg tttgctaatg atgagttgga gtctgacatt aagcactata
2201 gagttggtgg tattcctaat gcatgccctg aacttgggtc tacaatatca
2251 cctttcagag aaggaggagt tataatgtct gagtcggcag cgctgaaact
2301 gcttttgaag ggaattttta gacctaaggt gatgagacag ttgctgttag
2351 atgagcctta cctgttgatt ctatcaatat tatcccctgg catactgatg
2401 gctatgtaca ataatgggat ttttgaactt gcggtaaggt tgtggattaa
2451 tgagaaacaa tccatagcta tgatagcatc gctactatca gctttagccc
2501 tacgagtgtc agcggcagaa acactcgtcg cacagaggat tataattgat
2551 actgcagcta cagatctcct tgatgctacg tgcgatgggt tcaacctaca
2601 tctaacgtac cccactgcgt tgatggtgtt gcaagttgtt aagaatagaa
2651 atgaatgtga tgatacccna ttcaaggcgg gttttccaag ttacaacacg
2701 agcgtcgtac agatcatgga aaaaaattat ctaaatctct tgaacgatgc
2751 ttggaaagat ttaacttggc gggaaaaatt atccgcaaca tggtactcat
2801 acagagcaaa acgctctatc actcggtaca taaaacccac aggaagggca
2851 gatttgaaag ggttatacaa catatcacca caagcattct tgggccgagg
2901 cgcccaggtg gtcaaaggca ctgcctcagg attgagcgag cgatttaata
2951 attatttcaa tactaagtgt gtgaatattt catccttttt cattcgtaga
3001 atctttaggc gtttgccaac tttcgtcact tttgttaact cattattagt
3051 tattagtatg ttaaccagcg tagtggcagt gtgtcaggca ataattttag
3101 atcagaggaa gtataggaga gaaatcgagt tgatgcagat agagaagaat
3151 gagatcgtct gcatggagct atatgcaagt ttacagcgca aacttgaacg
3201 cgatttcaca tgggatgagt acattgagta tttgaagtca gtaaaccctc
3251 agatagttca gtttgctcaa gcgcagatgg aagaatatga tgtgcgacac
3301 cagcgttcca caccaggtgt taaaaatttg gaacaagtgg tagcatttat
3351 ggctttagtc atcatggtgt tcgatgctga aaggagtgat tgcgtgttca
3401 aaactctcaa taaatttaag ggtgtccttt cctcactgga ccatgaagtt
3451 agacatcagt ccttagacga tgtgatcaag aattttgatg agaggaatga
3501 gactattgat tttgaattga gtgaggacac aattcgaaca tcgtcagtgc
3551 tagatacaag gtttagtgat tggtgggacc gacaaatcca gatgggacat
3601 acacttccac attacagaac cgaggggcac ttcatggaat tcacaagagc
3651 aactgctgtc caagtggcta atgatatcgc ccatagcaaa cacctagatt
3701 ttctagtagg gggagctgtg gggtcgggaa agtcaacggg gttgcctgtt
3751 cttcttagtg tagcggggtc tgtgctttta tttgaaccaa cccgccccct
3801 agcggaaaac tttttcaaac agctatctag tgaacctttc ttcaaaaacc
3851 caacactgcg tatgcgtgga aatagtatat ttggctcttc tccaatctcc
3901 gtcatgacta gcggatttgc cctacactac ttccccaata atcgctctca
3951 attacctcat ttcaactttg tgatttttga tgagtgcctt gttctggatc
4001 cttccgcaag ggctttccgc attctgctga gtgtttatca tcaagcatgc
4051 aaagtattaa aagtgtcacc tcctccagtg ggaagagagg ttgattttac
4101 aacacaccac ccagtcaatt taatagtgga ggacaccctg tctttccaat
4151 cttttgttga tgcacagggt tctaaaacta atgctgatgt tgttcatttg
4201 ggttcaaacg tacttgtgta cgtgtcgagc tacaatgaag ttgacacttg
4251 ggctaacctc ctaacaaaca aaaatatgag ggtcacaaag tttgagggca
4301 aaacaataaa gcagggttgc ccataaattg tcacaaaagg aaccagtgcg
4351 agaccacttt ttgttgtagc aaccaacata attgagaatg gagtaacttt
4401 ggacatagac gtggttgtag attttggatt gaaagtctca ccgttcttgg
4451 acattgacaa taggagcatt gcttacaata aggtgagtgt tagctatggt
4501 gagagaattc aaaggctggg tcgtgttgga cgcttcaaga aaggagtagc
4551 attgcgcatt ggacacactg agaagggaat tattgaaatt ccaagcatga
4601 tcgctacaga ggcggctctt gcttgctttg catataactt gccagtgatg
4651 acaggaggcg tctcaactag tctgattggc aattgtactg tgcgccaagt
4701 taaaacaatg cagcaatttg aattgagtcc cttctttatc cagaatttcg
4751 ttgcccacga tggatcaatg catcctgtca tacatgacat tcttaaaaag
4801 tataaacttc gagattgtat gacacctttg tgcgatcagt ctataccata
4851 cagggcatcg agcacttggt tatcggttag tgaatatgag cgacttggag
4901 tggccttaga aattccaaag caagtcaaaa ttgcattcca tatcaaagag
4951 atccctccta agctccacga aatgctttgg gaaacggttg tcaagtacaa
5001 agacgtttgc ttatttccaa gcattcgagc atcgtccatc agcaaaatcg
5051 catacacatt gcgaacagac ctcttcgcca tcccaagaac tctaatattg
5101 gtggagagac tgcttgaaga ggagcgagtg aagcaaatcc aattcaaaag
5151 tctcatcgac caaggttgct caagcatgtt ttcaattgtc aacttgacaa
5201 acactctcag agctagatat gcaaaagatt acaccgcaga gaatatacaa
5251 aaacttgaga aagtgagaag tcaattgaaa gaattctcaa atttggatgg
5301 ttttgcatgt gaggaaaatt taataaagag gtatgagtct ttgcagttcg
5351 ttcatcacca agctgcgaca tcacttgcaa aggatctcaa gttgaagggg
5401 acttggaaga agtcattagt ggccaaagac ttgatcatag caggcgctgt
5451 tgcaattggt ggaataggac tcatatatag ttggttcaca caatcagttg
5501 agactgtgtc tcaccaaggg aaaaataaat ccaaaagaat tcaagccttg
5551 aagtttcgcc atgctcgtga caagagggct ggctttgaaa ttgacaacaa
5601 tgatgacaca atagaggaat tctttggatc tgcatacagg aagaagggaa
5651 aaggtaaagg caccactgtt ggtatgggca agtcaagcag gaggtttgtt
5701 aatatgtatg gatttgaccc aacagaatat tcattcatcc agttcgttga
5751 tccgctcact ggagctcaaa ttgaagagaa cgtctatgct gattttagag
5801 acatccaaaa ccccattagt gatgtccgca agaaaatggt agaggatgat
5851 gaaatcgaat tgcaagcatt gggcagcaac acaaccattc atgcttactt
5901 caggaaagat tggtctgaca aggctctaaa aattgatttg atgccacaca
5951 acccactcaa aatctgtgat aaatcgaatg gcattgctaa gtttcctgaa
6001 agagaacttg agttgagaca aactgggcca gcaatagagg ttgatgtgaa
6051 agacattcca aaacaggaag tggagcatga agccaaatca ctcatgagag
6101 gtttaaggga tttcaatcca attgctcaaa cagtttgcag agtaaaagtg
6151 tctgttgaat atggaacgtc tgaaatgtat gggttcggtt ttggtgcgta
6201 tattatagta aaccaccatc tattcaagag tttcaatgga tccatggaag
6251 tgcgatcaat gcatggaaca ttcagagtga agaatttgca tagcttgagc
6301 gttttaccga tcaaaggcag agacattatc atcataaaga tgccaaagga
6351 tttccctgtt ttcccacaaa aactgcactt ccgagctcca gtgcagaatg
6401 agaggatttg tttggttgga actaattttc aggaaaaaca tgcatcatca
6451 atcatcacag aaacgagtac tacatacaat gtaccgggca gcactttttg
6501 gaagcattgg attgaaacaa atgatgggca ttgtggatta ccagtagtga
6551 gtacagctga tggttgtcta gttggaatac acagcttggc gaataatgtg
6601 caaaccacga attattattc agcctttgat gaggattttg aaagtaagta
6651 tctccgaact aatgagcata atgagtggac caaatcgtgg gtatataacc
6701 cagatactgt gttgtggggt ccattaaagc tcaaggagag tacccctaaa
6751 ggcctgttta agacaacaaa acttgtacag gatttaattg atcatgatgt
6801 tgttgtagag caagctaaac attctgcgtg gatgtatgag gctctaacag
6851 ggaatttgca agctgtggcg acaatgaaga gtcagctggt gacaaagcac
6901 gtggtcaaag gggagtgtcg gcacttcaaa gagttcttaa ctgtggattc
6951 ggaagcagaa gcnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
7001 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
7051 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
7101 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnntt
7151 acatcaccga tgagcaggaa atcttcaaag ctctcaatat gaaagctgct
7201 gtcggagcta tgtatggagg caagaagaaa gactacttcg agcattttac
7251 tgaggcggat aaagaggaga tttttatgca aagttgcctc cgattgtaca
7301 agggctcgct tggcatatgg aatggatcat tgaaagcaga acttcggtgc
7351 aaagagaaga tacttgcaaa taagacaagg acattcactg ctgcaccttt
7401 agatactcta ctgggtggaa aggtgtgcgt tgatgatttt aataatcaat
7451 tctactcgaa gaacattgaa tgctgctgga ctgttggaat gactaagttt
7501 tatggaggtt gggacagatt gcttcggcgt ctacctgaaa attnnngggt
7551 gtactgcgat gccgatggtt cacaattcga tagttcactc accccatacc
7601 taattaatgc tgttctcatc atcagaagca catacatgga agattgggac
7651 ttggggttgc aaatgttgcg caatttgtac acagaaataa tttacacacc
7701 aatctcaact ccagatggaa caattgtcaa gaagtttaga ggtaataata
7751 gcggtcaacc ttctaccgtt gtggataatt ctctcatggt tgtccttgct
7801 atgcattacg ctctcattaa ggagtgcgtt gagtttgaag aaatcgacag
7851 cacgtgtgta ttctttgtta atggtgatga cttattgatt gctgtgaatc
7901 cggagaaaga gagcattctc gatagaatgt cacaacattt ctcagatctt
7951 ggtttgaact atgatttttc gtcgagaaca agaaggaaag aggaattgtg
8001 gttcatgtcc catagaggcc tgctaatcga gggtatgtac gtgccaaagc
8051 ttgaagaaga gagaattgta gnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
8101 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
8151 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
8201 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
8251 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
8301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
8351 nnnnnnnnnn nnnnnnnnnn nnnnnnnnng gaaatgacac aatcgatgca
8401 ggaggaagca ctaagaagga tgcaaaacaa gagcaaggta gcattcaacc
8451 aaatctcaac aaggaaaagg aaaaggacgt gaatgttgga acatctggaa
8501 ctcatactgt gccacgaatt aaagctatca cgtccaaaat gagaatgccc
8551 aagagtaaag gtgcaactgt actaaatttg gaacacttac tcgagtatgc
8601 tccacagcaa attgacatct caaatactcg agcaactcaa tcacagtttg
8651 atacgtggta tgaagcggta caacttgcat acgacatagg agaaactgaa
8701 atgccaactg tgatgaatgg gcttatggtt tggtgcattg aaaatggaac
8751 ctcgccaaac atcaacggag tttgggttat gatggatgga gatgaacaag
8801 tcgaataccc actgaaacca atcgttgaga atgcaaaacc aacacttagg
8851 caaatcatgg cacatttctc agatgttgca gaagcgtata tagaaatgcg
8901 caacaaaaag gaaccatata tgccccgata tggtttagtt tgtaatttgc
8951 gcgatggaag tttggctcgc tatgcttttg acttttatga ggtcacatca
9001 cgaacaccag tgagggctag ggaagcgcac attcaaatga aggccgcagc
9051 attgaaatca gcccaatctc gacttttcgg gttggacggt ggcatcagta
9101 cacaagagga gaacacagag aggcacacca ccgaggatgt ctctccaagt
9151 atgcatactc tacttggagt caagaacatg tgattgtagt gtctctcccg
9201 acgatatata agtatttaca tatgcagtaa gtattttggc ttttcctgta
9251 ctacttttat cataattaat aatcagtttg aatattaata atagatagag
9301 gtggcagggt gatttcgtca ttgtnggtga ctctatcttt taatttcgca
9351 ttattaagtc ttagataaaa gtgccgggtt gtcgctgttg tggatgattc
9401 atcgattagg tgatgttgcg attctgtcgt accc