Sequence of DPV Potato virus Y
Potato virus Y isolate Z16 polyprotein-like gene, partial sequence.
ACC No: JN936441
Dated: 2012-10-25 | Length: 9437 | CRC: -1513615944
ID JN936441; SV 1; linear; genomic RNA; STD; VRL; 9437 BP.
XX
AC JN936441;
XX
DT 25-OCT-2012 (Rel. 114, Created)
DT 25-OCT-2012 (Rel. 114, Last updated, Version 1)
XX
DE Potato virus Y isolate Z16 polyprotein-like gene, partial sequence.
XX
KW .
XX
OS Potato virus Y
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-9437
RA Visser J.C., Bellstedt D.U.;
RT "The molecular and biological characterization of South African isolates of
RT PVYNTN: implications for pathogenicity determinants";
RL Unpublished.
XX
RN [2]
RP 1-9437
RA Visser J.C., Bellstedt D.U.;
RT ;
RL Submitted (26-OCT-2011) to the INSDC.
RL Department of Biochemistry, Stellenbosch University, Lab 165, JC Smuts
RL Building, Van der Bijl Street, Stellenbosch, Western Cape 7600, South
RL Africa
XX
FH Key Location/Qualifiers
FH
FT source 1. .9437
FT /organism="Potato virus Y"
FT /host="Solanum tuberosum"
FT /strain="NTN"
FT /isolate="Z16"
FT /mol_type="genomic RNA"
FT /country="South Africa"
FT /collection_date="20-Jan-2010"
FT /db_xref="taxon:12216"
FT misc_feature <1. .9168
FT /note="similar to polyprotein"
XX
SQ Sequence 9437 BP; 2929 A; 1742 C; 2234 G; 2519 T; 13 other;
jn936441 Length: 9437 25-OCT-2012 Type: N Check: 8882 ..
1 tttggttcna ttgantgcaa acttccatac tcacccgctc cttttgggct
51 agttgcggga aaacgagaag tttcaaccac cactgacccc ttcgcaagtt
101 tggaaatgca gcttagtgcg cgattacgaa ggcaagagtt tgcaactatt
151 cgaacatcca agaatggtac ttgcatgtat cgatacaaga ctgatgtcca
201 gattgcgcgc attcaaaaga agcgcgagga gagagaaaga gaggaatata
251 atttccaaat ggctgcgtca agtgttgtgt cgaagatcac tattgctggt
301 ggagagccac cttcaaaact tgaatcacaa gtgcggaggg gtgtcatcca
351 cacaactcca aggatgcgca cagcaaaaac atatcacacg ccaaagttga
401 cagagggaca aatgatccac cttatcaagc aggtgaagca aattatgtca
451 accaaaggag ggtctgtcca actgattagc aagaaaaaca cccatgttca
501 ctataaagaa gttttggggt cacatcgcgc ggttgtttgc actgcacaca
551 tgagaggttt acgaaagaga gtggactttc ggtgtgacaa atggaccgtt
601 gtgcgtctac agcatctcgc caggacggac aagtggatat accaagttcg
651 tgctactgat ctacgcaagg gcgatagtgg agttatattg agtaatacta
701 atctcaaagg aaactttgga agaagctcgg agggcctatt catagtgcgt
751 gggtcgcacg aaggaaaaat ctatgatgca cgttccaagg ttactcaagg
801 ggttatggat tcaatggttc agttctcaag cgctgaaagc ttttggaagg
851 gattggacgg caattgggca caaatgagat atcctacaga tcatacatgt
901 gtggcaggct taccagttga ggactgtggc agagttgcag cgataatgac
951 acacagtatt ttaccgtgct ataagataac ctgccctacc tgtgcccaac
1001 aatatgccaa cttgccagcc agtgacttac ttaagatatt gcacaagcac
1051 gcaagtgatg gtttaaatcg attgggggca gacaaagatc gctttgtgca
1101 tgtcaaaaag ttcttgacaa tcttagagca cttaactgaa ccggttgatc
1151 tgagtctaga aattttcaat gaagtattca agtctatagg ggagaagcaa
1201 caatcacctt tcaaaaacct gaatattctg aataatttct ttttgaaagg
1251 aaaggaaaat acagctcgtg aatggcaggt ggctcattca accttacttg
1301 aattggcaag attccaaaag aacagaacgg ataatttaaa aaagggcgac
1351 gtctcgttct ttaggaataa actatctgcc aaagcaaatt ggaacttgta
1401 tctgtcatgt gataaccagc tggataagaa tgcaaacttc ctgtggggac
1451 agagagaata tcatgctaag cgatttttct cgaactattt tgaggaaatt
1501 gatccagcga agggctattc agcatacgaa aatcgtttgc atccgaatgg
1551 gacaagaaaa cttgcaattg gaaacctaat tgtaccactt gatctggctg
1601 agtttaggcg gaagatgaaa ggtgattata aaagacagcc aggggtgagt
1651 aagaagtgca cgagctcgaa ggatggaaac tacgtgtatc cctggtggtg
1701 cactacacct gatgatggct cagctgttgg tacaacgttt taccccccaa
1751 ctaaaaagca cctcgtaata ggtaatagtg gcgatcaaaa gtatgttgac
1801 ttaccaaaag ggaattctga gatgttatat attgccaggc aaggtttctg
1851 ttacattaac attttcctcg cgatgttgat taacattagt gaggaagatg
1901 caaaggattt cactaagaag gttcgtgaca tgtgtgtgcc aaagcttgga
1951 acctggccaa ccatgatgga tctggctaca acttgtgctc aaatgaaaat
2001 attctaccct gatgttcatg atgcaaaact gcctagaata ctagtcaatc
2051 acaaaacgca gacatgccat gtggttgact cgtttggctc acaaacaact
2101 gggtatcata ttttgaaagc atctagcgtg tcccaactaa ttttgtttgc
2151 taatgatgag ttggagtctg actttaagca ctatagagtg ggtggaattc
2201 ctcatgcacg ccctgaactt gggtctacaa taaccccttt catagaggga
2251 agagaaatat tatctgagtc ggcagcgctg aaactgcttt tgaagggaat
2301 ttttagacct aaggtgatga gacagttgct gttagatgag ccttacctgt
2351 tgattctatc aatattatcc cctggcatac tgatggctat gtacaataat
2401 gggatttttg aacttgcggt aaggttgtgg attaatgaga aacaatccat
2451 agctatgata gcatcgctac tatcagcttt agccctacga gtgtcagcgg
2501 cagaaacact cgtcgcacag aggattataa ttgatactgc agccacagat
2551 ctccttgatg ctacgtgcga tgggttcaac ctacatctaa cgtaccccac
2601 tgcgttgatg gtgttgcaag ttgttaagaa tagaaatgaa tgtgatgata
2651 ccctattcaa ggcgggtttt ccaagttaca acacgagcgt cgtacagatc
2701 atggaaaaaa attatctaaa tctcttgaac gatgcttgga aagatttaac
2751 ttggcgggaa aaattatccg caacatggta ctcatacaga gcaaaacgct
2801 ctatcactcg gtacataaaa cccacaggaa gggcagattt gaaagggtta
2851 tacaacatat caccacaagc attcttgggc cgaggcgccc aggtggtcaa
2901 aggcactgcc tcaggattga gcgagcgatt taataattat ttcaatacta
2951 agtgtgtgaa tatttcatcc tttttcattc gtagaatctt taggcgtttg
3001 ccaactttcg tcacttttgt taactcatta ttagttatta gtatgttaac
3051 cagcgtagtg gcagtgtgtc aggcaataat tttagatcag aggaagtata
3101 ggagagaaat tgagttgatg cagatagaga agaatgagat cgtctgcatg
3151 gagctatatg caagtttaca gcgcaaactt gaacgcgatt tcgcatggga
3201 tgagtacatt gagtatttaa agtcggtaaa ccctcagata gttcagtttg
3251 ctcaccccca aatggaagaa tataatgtgc gacaccagcg ttccccaccc
3301 ggtgttaaaa atttggaaca agtgggagca tttatggctt tagtcatcat
3351 ggtgtttgat gctgaaagga gggattgggt gttcaaaact ctcaaaaaat
3401 ttaagggtgt cctttcctca ctggaccatg aagttagaca tcagtcctta
3451 gacgaagtga tcaagaattt tgatgagagg aaagagacta ttgattttga
3501 attgagtggg gacacaattt gaacatcatc agtgctagat acaaaggtta
3551 gtgaatggtg ggaccgacta atttagatgg gacatacact tccacattac
3601 agaaccgagg ggcacttcat ggaattcaca agagcaactg ctgtccaagt
3651 ggctaatgat atcgcccaca gcgaacacct agactttcta gtaaggggag
3701 ctgttgggtc tggaaagtca aatgggttgc ctgttcatct tagtgtagct
3751 ggatctgtgc ttttaattga accaacgcga ccactagcgg agaacgtttt
3801 caaacagcta tctagtgaac ctttcttcaa gaagccaaca ctgcgtatgc
3851 gtggaaatag tatatttggc tcttcttcaa tctccgtcat gactagcgga
3901 tttgcgctac actactttgc caataatcgc tctcaattag ctcagttcaa
3951 ctttgtgata tttgatgagt gccatgttct ggatccttcc gcaatggcgt
4001 tccgcagtct gctgagtgtt taccatcaag catgcaaagt attaaaagtg
4051 tcagcttctc cagtgggaag agaggttgag tttacaacac agcaaccagt
4101 caagttaata gtggaggaca cactgtcttt ccaatcattt gttgatgcac
4151 aaggttctaa aaccaatgct gatgttgttc agtttggttc aaacgtactt
4201 gtgtacgtgt cgagctacaa tgaagttgac accttggcta agctcctaac
4251 agacaagaat atgatggtca caaaggttga tggcagaaca atgaagcacg
4301 gttgcctaga aattgtcaca aaaggaacca gtgcgagacc gcattttgtt
4351 gtagcaacca acataattga gaatggagtg actttggaca tagacgtggt
4401 tgtagatttt gggttgaaag tctcaccgtt cttggacatt gacaatagga
4451 gcattgctta caataaggtg agtgttagct atggtgagag aattcaaagg
4501 ctgggtcgtg ttggacgctc aaagaaagga gtagcattgc gcattggaca
4551 cactgagaag ggaattattg aaattccaag catgatcgct acagaggcgg
4601 ctcttgcttg ctttgcatat aacttgccag tgatgacagg aggcgtctca
4651 actagtctga ttggcaattg tactgtgcgc caagttaaaa caatgcagca
4701 atttgaattg agtcccttct ttatccagaa tttcgttgcc cacgatggat
4751 caatgcatcc tgtcatacat gacattctta aaaagtataa acttcgagat
4801 tgtatgacac ctttgtgcga tcagtctata ccatacaggg catcgagcac
4851 ttggttatcg gttagtgaat ataagcgact tggagtggcc ttagaaattc
4901 caaagcaagt caaaattgca ttccatatca aagagatccc tcctaagctc
4951 caagaaatgc ttaggaaaac gggtggcaag tacaaagacg tttgcttctt
5001 tccaagcatt cgagcatcgt ccatcagcaa aatcgcatac acattgcgta
5051 cagacctctt cgccatccca agaactctaa tattggtgga gagactgctt
5101 gaagaggagc gagtgaagca gagccaattc agaagtctca tcgacgaagg
5151 atgctcaagc atgttttcaa ttgtcaactt gacaaacact ctcagagcta
5201 gatatgcaaa agattacacc gcagagaata tacaaaaact ngagaaagtg
5251 agaagtcaat tgaaagaatt ctcaaatttg gatggttctg catgtgagga
5301 aaatttaata aagaggtatg agtctttgca gttcgttcat caccaagttg
5351 cgacgtcact tgcaaaggat ctcaagttga aggggacttg gaagaagtca
5401 ttagtggcca aagatttgat catagcaggc gctgttgcaa ttggtggaat
5451 aggactcata tatagttggt tcacacaatc agttgagact gtgtctcacc
5501 aagggaaaaa taaatccaaa agaattcaag ccttgaagtt tcgccatgct
5551 cgtgacaaaa gggctggctt tgaaattgac aacaatgatg acacaataga
5601 ggaattcttt ggatctgcat acaggaagaa gggaaaaggt aaaggcacca
5651 ctgttggtat gggcaagtca agcaggaggt ttgttaatat gtatggattt
5701 gacccaacag aatattcatt catccagttc gttgatccgc tcactggagc
5751 tcaaattgaa gagaacgtct atgctgatat tagagacatc caagagcgct
5801 ttagtgatgt ccgcaagaaa atggtagagg atgatgaaat cgaattgcaa
5851 gcattgggca gcaacacaac cattcatgct tacttcagga aagattggtc
5901 tgacaaggct ctaaaaattg atttgatgcc acacaaccca ctcaaaatct
5951 gtgataaatc gaatggcatt gctaagtttc ctgaaagaga acttgagttg
6001 agacaaactg ggccagcaat agaggttgat gtgaaagaca ttccaaaaca
6051 ggaagtggag catgaagcca aatcactcat gagaggttta agggatttca
6101 atccaattgc tcaaacagtt tgcagagtaa aagtgtctgt tgaatatgga
6151 acgtctgaaa tgtatgggtt cggttttggt gcgtatatta tagtaaacca
6201 ccatctattc aagagtttca atggatccat ggaagtgcga tcaatgcatg
6251 gaacattcag agtgaagaat ttgcatagct tgagcgtttt accgatcaaa
6301 ggcagagaca ttatcatcat aaagatgcca aaggatttcc ctgttttccc
6351 acaaaaactg cacttccgag ctccagtgca gaatgagagg atttgtttgg
6401 ttggaactaa ttttcaggaa aaacatgcat catcaatcat cacagaaacg
6451 agtactacat acaatgtacc gggcagcact ttttggaagc attggattga
6501 aacaaatgat gggcattgtg gattaccagt agtgagtaca gctgatggtt
6551 gtctagttgg aatacacagc ttggcgaata atgtgcaaac cacgaattat
6601 tattcagcct ttgatgagga ttttgaaagt aagtatctcc gaactaatga
6651 gcataatgag tggaccaaat cgtgggtata taacccagat actgtgttgt
6701 ggggtccatt aaagctcaag gagagtaccc ctaaaggcct gtttaagaca
6751 acaaaacttg tacaggattt aattgatcat gatgttgttg tagagcaagc
6801 taaacactct gcgtggatgt atgaggctct aacagggaat ttgcaagctg
6851 tggcgacaat gaagagtcag ctggtgacaa agcacgtggt caaaggggag
6901 tgtcggcact tcaaagagtt cttaactgtg gattcggaag cagaagcnnn
6951 nnntttcttc aggcctttga tggatgctta tgggaagagc ttgttaaata
7001 gagaagcata cataaaggac ataatgaaat actcaaagcc tattgatgtt
7051 ggaacagtag actgtgatgc ttttgaagag gctatcaata gggttatcat
7101 ttatctgcaa gtgcatggct tccagaaatg caattacatc accgatgagc
7151 aggaaatttt caaagctctc aatatgaaag ctgctgtcgg agctatgtat
7201 ggaggcaaga agaaagacta cttcgagcat tttactgagg cggataaaga
7251 ggaaattgtt atgcaaagtt gccttcgatt gtacaagggc tcgcttggca
7301 tatggaatgg atcgttgaaa gcagaacttc agtgcaaaga gaagatactt
7351 gcaaataaga caaggacctt cactgctgca cctttatata atctactggg
7401 cggaaaggtg tgccttcatg attttaataa tcaattctac tcgaagaaca
7451 ttgaatgctg ctggactgtt ggaatgacta agttttatgg aggttgggac
7501 aaattgcttc ggcgtctacc tgaaaattnn ngggtgtact gcgatgccga
7551 tggttcacaa ttcgatagtt cactcacccc atacctaatt aatgctgttc
7601 tcatcatcag aagcacatac atggaagatt gggacttggg gttgcaaatg
7651 ttgcgcaatt tgtacacaga aataatttac acaccaatct caactccaga
7701 tggaacaatt gtcaagaagt ttagaggtaa taatagcggt caaccttcta
7751 ccgttgtgga taattctctc atggttgtcc ttgctatgca ttacgctctc
7801 attaaggagt gcgttgagtt tgaagaaatc gacagcacgt gtgtattctt
7851 tgttaatggt gatgacttat tgattgctgt gaatccggag aaagagagca
7901 ttctcgatag aatgtcacaa catttctcag atcttggttt gaattatgat
7951 ttttcgtcga gaacaagaag gaaggaggaa ttgtggttca tgtcccatag
8001 aggcctgcta atcgagggta tgtacgtgcc aaagcttgaa gaagagagaa
8051 ttgtatccat tttgcaatgg gatagagctg atctgccaga gcacagatta
8101 gaagcgattt gtgcagcaat gatagaatcc tggggttatt ttgagttaac
8151 gcaccaaatc aggagatttt actcatggtt gttgcaacag caaccttttt
8201 caacgatagc acaggaagga aaagctccat acatagcgag catggcattg
8251 aagaagctgt acatgaatag gacagtagat gaggaggaac tgaaggcttt
8301 cactgaaatg atggttgcct tggatgatga acttgagtgc gatacttatg
8351 aagtgcacca tcaaggaaat gacacaatcg atgcaggagg aagcactaag
8401 aaggatgcaa aacaagagca aggtagcatt caaccaaatc tcaacaagga
8451 aaaggaaaag gacgtgaatg ttggaacatc tggaactcat actgtgccac
8501 gaattaaagc tatcacgtcc aaaatgagaa tgcccaagag taaaggtgca
8551 actgtactaa atttggaaca cttactcgag tatgctccac agcaaattga
8601 catctcaaat actcgagcaa ctcaatcaca gtttgatacg tggtatgaag
8651 cggtacaact tgcatacgac ataggagaaa ctgaaatgcc aactgtgatg
8701 aatgggctta tggtttggtg cattgaaaat ggaacctcgc caaacatcaa
8751 cggagtttgg gttatgatgg atggagatga acaagtcgaa tacccactga
8801 aaccaatcgt tgagaatgca aaaccaacac ttaggcaaat catggcacat
8851 ttctcagatg ttgcagaagg gtatatagaa aagcgcaaca aaaaggaacc
8901 atatatgccc cgatatggtt tagtttgtaa tttgcgcgat ggaagtttgg
8951 ctcgctatgc ttttgacttt tatgaagtca catcacgaac accagtgagg
9001 gctagggaag cgcacattca aacgaaggcc gcagcattga aatcagccca
9051 acctcgactt tttgggttgg acgggggcat cagtacacaa gaggagaaca
9101 cagagaggca cacccccgag gatgtctctc caagtatgca tactctactt
9151 ggagtcaaga acatgtgatt gtagtgtctc tccggacgat atataagtat
9201 ttacatatgc agtaagtatt ttggcttttc ctgtgctact tttatcataa
9251 ttaataatca gtttgaatat tactaataga tagaggtggc agggggattt
9301 tgtcattgtn ggtgactcta tcttttaatt ccgcattatt aagttttaga
9351 taaaagtgcc gggttgtggg tgttgtggat gattcatcga ttaggtgatg
9401 ttgcgattct gtcgtagcag tgactatgtc tggataa