Sequence of DPV Sugarcane streak mosaic virus

Sugarcane streak mosaic virus isolate CBV2000V59 HC-Pro protein gene, partial cds.

ACC No: JN941974

Dated: 2012-07-11 | Length: 1410 | CRC: -1970393585

                
ID   JN941974; SV 1; linear; genomic RNA; STD; VRL; 1410 BP.
XX
AC   JN941974;
XX
DT   11-JUL-2012 (Rel. 113, Created)
DT   11-JUL-2012 (Rel. 113, Last updated, Version 1)
XX
DE   Sugarcane streak mosaic virus isolate CBV2000V59 HC-Pro protein gene,
DE   partial cds.
XX
KW   .
XX
OS   Sugarcane streak mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae.
XX
RN   [1]
RP   1-1410
RX   PUBMED; 22481599.
RA   Bagyalakshmi K., Parameswari B., Chinnaraja C., Karuppaiah R.,
RA   Ganesh Kumar V., Viswanathan R.;
RT   "Genetic variability and potential recombination events in the HC-Pro gene
RT   of sugarcane streak mosaic virus";
RL   Arch. Virol. 157(7):1371-1375(2012).
XX
RN   [2]
RP   1-1410
RA   Bagyalakshmi K., Parameswari B., Chinnaraja C., Ganesh Kumar V.,
RA   Karuppaiah R., Viswanathan R.;
RT   ;
RL   Submitted (25-OCT-2011) to the INSDC.
RL   Pathology, Sugarcane Breeding Institute, Veerakeralam, Coimbatore,
RL   Tamilnadu 641007, India
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1410
FT                   /organism="Sugarcane streak mosaic virus"
FT                   /host="Saccharum hybrid cultivar CBV2000V59"
FT                   /isolate="CBV2000V59"
FT                   /mol_type="genomic RNA"
FT                   /country="India"
FT                   /collected_by="Bagyalakshmi, K"
FT                   /collection_date="19-Mar-2011"
FT                   /identified_by="Viswanathan, R"
FT                   /db_xref="taxon:53954"
FT   CDS             <1. .>1410
FT                   /codon_start=1
FT                   /product="HC-Pro protein"
FT                   /protein_id="AFN26731.1"
FT                   /translation="TDGHKAKSHLFWDAIMKCHPDDHKFVDTTWNDEAYANMGYWLAAT
FT                   YPFRVACKECSSIKSVREWVQNMQASKAYQLLRGGTSKHSRDLFRWLAAIQSELMTFNI
FT                   RDAQNTQEDLNRNFLGTIPIGPIFDVANQMNQAVVDIQRGLQQMHKLITDAELTHQSRD
FT                   EQILNEIARLRGLEFMQTERLMTNMKHVAMTYRNLINTASQPLSIHTMRQLLLDARSDE
FT                   AYEFDIVRGKGAIAIVAPGVFRKFDNIYSQPGVYNPEWTHLTPGGEIRTDFDYLRTDLK
FT                   ISQLHDKIHKWPENPLVDETCVVSEGEMSYHLCERVYECFVPIPYILRVGNPQNPTLIR
FT                   IQDMIDGDTYLPRQGYCYVLQFVLMLGFVGDSMVTPFVEEVGVQIQKLGKWPLFEDYMD
FT                   TIKQLVLKFPTAAKAPTVLYVVNHTQEYIHAITTLGCVNKNEHYLNVHSVAKLHEVMAT
FT                   LNTHKIIKYRIG"
XX
SQ   Sequence 1410 BP; 453 A; 279 C; 311 G; 367 T; 0 other;

jn941974 Length: 1410  11-JUL-2012  Type: N  Check: 9654  ..

       1  acagacggac ataaggcaaa atcacatcta ttctgggacg cgattatgaa
      51  gtgtcatcct gatgaccaca agtttgttga cacgacatgg aacgatgagg
     101  cttatgcaaa catgggctat tggttggctg caacatatcc atttagggtt
     151  gcttgcaaag aatgctcgag cattaaatct gttcgtgaat gggtacaaaa
     201  catgcaagca tcgaaagctt atcaactctt gcgaggcggt acgtcaaagc
     251  actcgcgaga tctatttaga tggctggcgg caattcaatc tgaattaatg
     301  actttcaata tcagagatgc gcaaaacaca caagaggacc tcaataggaa
     351  cttccttggg acgataccta tcggtccaat tttcgacgtg gcgaatcaaa
     401  tgaatcaggc ggtagttgat attcaaagag gtttacaaca gatgcataaa
     451  ctaatcacgg acgcggagtt aacacatcaa tcacgagatg agcaaatttt
     501  aaatgaaatt gcacgacttc gaggattaga atttatgcaa acggagaggc
     551  ttatgacgaa tatgaagcat gttgctatga cctacagaaa tttaataaac
     601  accgcaagtc aaccactatc aatacacacg atgcgacaac tcctgctcga
     651  tgctcgcagt gatgaagctt atgagttcga tatcgtgcga ggaaagggcg
     701  caatcgcaat agttgcacct ggagttttcc gaaaattcga taacatatac
     751  tcacaaccag gtgtttacaa tccagaatgg acccatttga caccaggagg
     801  ggaaatacga actgatttcg actacttgcg tacagacctc aaaatctcgc
     851  agctgcacga taaaatccac aaatggcctg agaatccact tgttgatgaa
     901  acgtgcgttg tatctgaagg ggagatgtca tatcatttgt gtgaacgagt
     951  ttatgagtgt tttgttccta taccatacat tttgcgggtt ggcaatccac
    1001  agaacccaac gctcatcaga atccaggata tgattgacgg agatacatac
    1051  ctaccacgcc aagggtactg ctatgttcta caatttgtgc taatgcttgg
    1101  ttttgtaggt gattcgatgg tcactccgtt tgttgaagaa gttggagttc
    1151  agatacagaa gcttgggaag tggccattat ttgaagatta catggacact
    1201  attaaacaat tggttttgaa gtttccaaca gcagctaaag ctccgactgt
    1251  gttgtatgtt gttaatcaca cacaagagta cattcacgca ataacaacac
    1301  ttggatgtgt gaataagaac gaacattatt taaacgtcca tagtgttgca
    1351  aaattacacg aggtgatggc aacgctcaac acacacaaaa ttataaaata
    1401  tcgtattgga