Sequence of DPV Tomato yellow leaf curl virus
Tomato yellow leaf curl virus strain HBRY, complete genome.
ACC No: JQ004047
Dated: 2012-02-12 | Length: 2781 | CRC: 130322379
ID JQ004047; SV 1; circular; genomic DNA; STD; VRL; 2781 BP.
XX
AC JQ004047;
XX
DT 12-FEB-2012 (Rel. 111, Created)
DT 12-FEB-2012 (Rel. 111, Last updated, Version 1)
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DE Tomato yellow leaf curl virus strain HBRY, complete genome.
XX
KW .
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OS Tomato yellow leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2781
RA Zhu X., Liu W.;
RT ;
RL Submitted (08-NOV-2011) to the INSDC.
RL Department of Plant Pathology, Shandong Agricultural University, No. 61,
RL Daizong Street, Tai'an, Shandong 271018, China
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FH Key Location/Qualifiers
FH
FT source 1. .2781
FT /organism="Tomato yellow leaf curl virus"
FT /host="Lycopersicon esculentum"
FT /strain="HBRY"
FT /mol_type="genomic DNA"
FT /country="China:Hengshui Raoyang, Hebei province"
FT /collected_by="Zhu Xiao-ping"
FT /collection_date="14-Aug-2011"
FT /db_xref="taxon:10832"
FT CDS 148. .498
FT /codon_start=1
FT /product="AV2 protein"
FT /protein_id="AEZ66848.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL
FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV
FT PEAQNIQNVSKP"
FT CDS 308. .1084
FT /codon_start=1
FT /product="AV1 protein"
FT /protein_id="AEZ66849.1"
FT /translation="MSKRPGDIIISTPASKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW
FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH
FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN
FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN"
FT CDS complement(1081. .1485)
FT /codon_start=1
FT /product="AC3 protein"
FT /protein_id="AEZ66850.1"
FT /translation="MDSRTGELISAPQAENGVFIWEINNPLYFKITEHSQRPFLMNNDI
FT ISIQIRFNHNIRKALGIHKCFLNFRIWTTLQPQTGRFLRVFRYQVLKYLYSLGVISINN
FT VIRAVDHVLYDVLENTINVTATHDIKYKFY"
FT CDS complement(1226. .1633)
FT /codon_start=1
FT /product="AC2 protein"
FT /protein_id="AEZ66851.1"
FT /translation="MQSSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHI
FT NCNNHGFSHRGTHLCSSSREWRFYLGDKQSPLFQDNRTQPEAISNEQRHHFHSDKIQPQ
FT HQEGIGDSQMFSQLPNLDDITASDWSFLKSI"
FT CDS complement(1542. .2615)
FT /codon_start=1
FT /product="AC1 protein"
FT /protein_id="AEZ66852.1"
FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLKNLETPTNKKYIKVC
FT RELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK
FT DGEFIDFGVFQIDSRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL
FT SSNLDRIFSPPLEVYISPFLSSSFNQVPDELDEWVAENVVSSAARPWRPISIVIEGDSR
FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDVWYNVIDDVDPHYLKHFKEFMGAQRDWQS
FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNISLKNWALKNAIFVTLYEPLFA
FT SINQGPTQDSQEETNKA"
FT CDS complement(2171. .2464)
FT /codon_start=1
FT /product="AC4 protein"
FT /protein_id="AEZ66853.1"
FT /translation="MGNHISMCLSNSKANTNVRTNGSSTWYPQTGQHISIRTFRQLRAQ
FT QMSRPTWRKTENSLILEFSKSIADQLEEVSNLPTTHMPRHSIQAVNPRPSIY"
XX
SQ Sequence 2781 BP; 757 A; 528 C; 611 G; 885 T; 0 other;
jq004047 Length: 2781 12-FEB-2012 Type: N Check: 3969 ..
1 accggatggc cgcgccttct ctttttacgt ggtccccacg agggttccac
51 gtacgtcact gtcaaccaat caaattgcat cctcaaacgt tagataagtg
101 ttcatttgtc tttatatact tggtccccaa gtagtctgtc ttgcaatatg
151 tgggatccac ttctaaatga atttcctgaa tctgttcacg gatttcgttg
201 tatgttagct attaaatatt tgcagtccgt tgaggaaact tacgagccca
251 atacattggg ccacgattta attagggatc ttatatctgt tgtaagggcc
301 cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgcct
351 cgaaggttcg ccgaaggctg aacttcgaca gcccatacag cagccgtgct
401 gctgtcccca ttgtccaagg cacaaacaag cgacgatcat ggacgtacag
451 gcccatgtac cggaagccca gaatatacag aatgtatcga agccctgatg
501 ttcctcgtgg atgtgaaggc ccatgtaaag tccagtctta tgagcaacgg
551 gatgatatta agcatactgg tattgttcgt tgtgttagtg atgttactcg
601 tggatctgga attactcaca gagtgggtaa gaggttctgt gttaaatcga
651 tatatttttt aggtaaagtc tggatggatg aaaatatcaa gaagcagaat
701 cacactaatc aggtcatgtt cttcttggtt cgtgatagaa ggccttatgg
751 aaacagccca atggattttg gacaggtttt taatatgttc gataatgagc
801 ccagtaccgc aactgtgaag aatgatttgc gggataggtt tcaagtgatg
851 aggaaatttc atgctacagt tattggtggg ccctctggaa tgaaggaaca
901 ggcattagtt aagaggtttt ttagaattaa cagtcatgta acttataatc
951 atcaggaggc agccaagtat gagaaccata ctgaaaacgc cttgttattg
1001 tatatggcat gtacgcatgc ctctaatcca gtgtatgcaa ctatgaaaat
1051 acgcatctat ttctatgatt caatatcaaa ttaataaaat ttatatttta
1101 tatcatgagt tgctgttaca tttattgtgt tttcaagtac atcatacaat
1151 acatgatcaa ctgctctgat tacattgtta attgaaatta caccaagact
1201 atataaatac ttaagaactt gatatctaaa tactcttaag aaacgaccag
1251 tctgaggctg taatgtcgtc caaattcgga agttgagaaa acatttgtga
1301 atccccaatg ccttcctgat gttgtggttg aatcttatct gaatggaaat
1351 gatgtcgttg ttcattagaa atggcctctg gctgtgttct gttatcttga
1401 aatagagggg attgtttatc tcccagataa aaacgccatt ctctgcttga
1451 ggagcagaga tgagttcccc tgtgcgagaa tccatgattg ttgcagttga
1501 tgtggaggta gtatgagcag ccacagtcta ggtctacacg cttacgcctt
1551 attggtttct tcttggctat cttgtgttgg accttgattg atacttgcga
1601 acagtggctc gtagagggtg acgaagattg cattcttgag agcccaattt
1651 ttcaaggata tgtttttttc ttcgtctaga tattctttat atgaggaggt
1701 aggtcctgga ttgcagagga agatagtggg aattccccct ttaatttgaa
1751 tgggcttccc gtactttgtg ttgctttgcc agtccctctg ggcccccatg
1801 aattccttga agtgctttaa ataatgcggg tctacgtcat caatgacgtt
1851 gtaccacaca tcattactgt acacctttgg gcttaggtct agatgtccac
1901 ataaataatt atgtgggcct agagacctgg cccacattgt tttgcctgtt
1951 ctgctatcac cctcaatgac aatacttatg ggtctccatg gccgcgcagc
2001 ggaagatacg acgttctcgg cgacccactc gtcaagttca tctggaactt
2051 gattaaaaga agaagaaaga aatggagaaa tataaacttc taaaggagga
2101 ctaaaaatcc tatctaaatt tgaacttaaa ttatgaaatt gtaaaatata
2151 gtcctttggg gccttctctt ttaatatatt gagggcctcg gatttactgc
2201 ctgaattgag tgcctcggca tatgcgtcgt tggcagattg ctgacctcct
2251 ctagctgatc tgctatcgat ttggaaaact ccaaaatcaa tgaattctcc
2301 gtctttctcc acgtaggtct tgacatctgt tgagctctta gctgcctgaa
2351 tgttcggatg gaaatgtgct gacctgtttg gggataccag gtcgaagaac
2401 cgttggttct tacattggta tttgccttcg aattggataa gcacatggag
2451 atgtggttcc ccattctcgt ggagttctct gcaaactttg atgtattttt
2501 tatttgttgg ggtttctagg ttttttaatt gggaaagtgc ttcctcttta
2551 gagagagaac aattgggata tgttaggaaa taatttttgg catatatttt
2601 aaataaacga ggcatgttga aatgaattgg tgtccctcaa agctctatgg
2651 caatcggtgt atcggtgtct tacttatacc tggacaccta atggttattt
2701 ggtaattttg taaaagtaca ttgcaattca acattcaaaa ttcaaaaatc
2751 aaatcattaa agcggccatc cgtataatat t