Sequence of DPV Potato yellow mosaic virus
Potato yellow mosaic virus isolate Tulua/Valle del Cauca/2008 segment B, complete sequence.
ACC No: JQ045706
Dated: 2012-12-23 | Length: 2559 | CRC: 1237994200
ID JQ045706; SV 1; circular; genomic DNA; STD; VRL; 2559 BP.
XX
AC JQ045706;
XX
DT 23-DEC-2012 (Rel. 115, Created)
DT 23-DEC-2012 (Rel. 115, Last updated, Version 1)
XX
DE Potato yellow mosaic virus isolate Tulua/Valle del Cauca/2008 segment B,
DE complete sequence.
XX
KW .
XX
OS Potato yellow mosaic virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2559
RA Lopez-Lopez K., Betancurt-Perez J.F., Vaca-Vaca J.C.;
RT "Distribution and genetic diversity of tomato-infecting begomovirus in
RT Colombia";
RL Unpublished.
XX
RN [2]
RP 1-2559
RA Lopez-Lopez K., Betancurt-Perez J.F., Vaca-Vaca J.C.;
RT ;
RL Submitted (21-NOV-2011) to the INSDC.
RL Facultad de Ciencias Agropecuarias, Universidad Nacional de Colombia,
RL Carrera 32 via Candelaria, Palmira, Valle 000, Colombia
XX
FH Key Location/Qualifiers
FH
FT source 1. .2559
FT /organism="Potato yellow mosaic virus"
FT /segment="B"
FT /host="Solanum lycopersicum"
FT /isolate="Tulua/Valle del Cauca/2008"
FT /mol_type="genomic DNA"
FT /country="Colombia"
FT /collected_by="K Lopez-Lopez & JC Vaca-Vaca"
FT /collection_date="10-Dec-2008"
FT /db_xref="taxon:10827"
FT gene 402. .1172
FT /gene="BV1"
FT CDS 402. .1172
FT /codon_start=1
FT /gene="BV1"
FT /product="nuclear shuttle protein"
FT /note="NSP"
FT /protein_id="AFS42029.1"
FT /translation="MYFTKYRSRAFKKQPRTNPRNNLVRGQSFFKRNDSKRRAFHTIKT
FT ADESMMKAQRIHENQYGPEFAMDHNTAVSTFISYPDVTKSSPNRTRSYIKLKRLQFKGI
FT VKVERVHTDVNMDCSVPKTEGVFSLVIVVDRKPHLGPSGGLLTFDELFGARIHSHGNLA
FT IVPSLKDRFYIRHVTKRVVSVDKDSTMVDIEGVTTLSSKRFNCWSGFKDLDIDSRKGVY
FT DNINKNALLVYYCWMSDTVSKASTFVSFDLDYIG"
FT gene complement(1194. .2072)
FT /gene="BC1"
FT CDS complement(1194. .2072)
FT /codon_start=1
FT /gene="BC1"
FT /product="movement protein"
FT /note="MP"
FT /protein_id="AFS42030.1"
FT /translation="MNSQLVNPPHAFNYIESQRNEYRLSHDLTEIILQFPSTAAQLTAR
FT LSRSCMKVDHCVIEYRQQVPINATGSVIVEIHDKRMTDNESLQASWTFPIRCNIDLXYF
FT SASFFSLKDPIPWKLYYRVSDTNVHQQTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILS
FT KQFSDKDVDFSHVDYGKWERKPIRCASLSRGLRGPIEIGPGESWASRSTIEVGPSDGDS
FT AIEHELHPYRDLQRLGASALDPGESASIVGANRAVSNITMSVAQLNELVRTTVQECIKS
FT NCNSSQPKNFK"
XX
SQ Sequence 2559 BP; 729 A; 479 C; 563 G; 784 T; 4 other;
jq045706 Length: 2559 23-DEC-2012 Type: N Check: 6055 ..
1 cggatggccg cgcttttttt tggttaatgg gccgtctcac gtgctgggct
51 ttgtttttat aggcccatcg atatgttctt tccaggccca agttggactg
101 acacctcact ttcctcgtta tttcatattg ctttccttta actttatatc
151 caatttcgac agctgttccg cataacttat atattgacga cgtgggtaat
201 tcttggccaa gttataatga ctatgtcgaa attgagttta actactttgg
251 agctcatgga ccacggaact gttattcaca cgtgtaccag ttaaattcat
301 cgtgtgaagc aaatttaaat aattgtttaa tgggatatgt ctatatattt
351 actgactagg aatgagctca ttattacgtg ggcaataata agtatctgat
401 aatgtatttt actaagtacc gaagtcgtgc gtttaaaaaa caaccacgta
451 ctaacccacg taataatttg gtaagagggc aatcattttt caagcgtaac
501 gatagcaagc gtcgagcgtt tcataccatc aagacggctg atgagtctat
551 gatgaaggct caacgtattc atgagaatca atatggtcct gagtttgcaa
601 tggatcataa tacagcagtc tctacattca ttagctatcc tgatgtgact
651 aagtctagcc ccaaccgaac gaggtcatat attaagttaa aacgacttca
701 gttcaagggt attgtcaaag tggaacgtgt tcatacagac gtgaacatgg
751 actgttcagt accaaagacg gaaggggtct tttctttggt tattgtcgtg
801 gatcgtaaac ctcatcttgg accatctggg ggacttctta cattcgacga
851 attgtttggt gcacggatcc acagtcatgg aaacttggca atagttccct
901 ctctgaagga tcgattctat atacgccacg tgacgaaacg tgtggtgtca
951 gttgataaag atagcacaat ggtggatatc gaaggtgtta caactctttc
1001 cagcaagcgt tttaattgtt ggtcaggttt taaggacctt gatatagatt
1051 ctcgaaaggg tgtctacgat aatattaata agaacgcctt gttagtgtat
1101 tattgctgga tgtcggatac tgtatccaaa gcatccacat ttgtatcatt
1151 tgaccttgat tatattggat gagtgtatat aataataaaa attttattta
1201 aaatttttgg gttgagaact attacagtta ctctttatac attcttggac
1251 agttgtcctt acaagttcat ttaactgggc tacggacatg gttatgttcg
1301 acacggccct gtttgcacca actatagatg cggactctcc cggatctaga
1351 gcgctggctc ccagcctttg cagatcacga tacggatgta actcatgttc
1401 tatcgccgag tctccatctg atggacccac ttctattgta ctcctggaag
1451 cccatgattc accaggtcct atctcaattg gtcctcttag tcctcttgac
1501 aaggatgcgc aacgtatggg cttcctctcc catttcccat agtcgacgtg
1551 agagaaatcc acatctttgt cactgaactg ttttgacagt atctttaccg
1601 ttggtgctct gaacggaatg tctacggaat gtttcgccgt cgacagtttc
1651 agcttccctt tgaacttggc aaagtgtgtt tgctgatgaa cgttcgtgtc
1701 ggaaactctg taatatagtt tccaggggat aggatctttt agcgagaaaa
1751 aggaagctga aaaatastgg agatctatgt tgcatcttat cggaaacgtc
1801 caggacgctt gtagtgattc attgtctgtc atccttttgt catgaatctc
1851 cactattact gaaccggtgg cgttgatggg tacctgttgc ctgtactcaa
1901 ttacgcagtg gtctactttc atacagctgc gactgagcct cgccgttaac
1951 tgcgccgccg ttgaaggaaa ttggagtatt atctcagtta gatcatgaga
2001 aagccgatat tcatttcgtt gggactctat ataattgaaa gcatgaggag
2051 gattaactaa ctgagaattc atttattaaa aataggccgc gcagcggcac
2101 cgcttcggga ataagtaaag aaaggacaaa gatagggttt cggtagaaag
2151 ttaagaaaag agaggataaa aatagggttt cgtcagaaag atgaagaaat
2201 tagtattatc attgaaggtg actctagaac gggcaagacg atgatatcga
2251 agagaagaaa sasaaacasg atactgctat ggaagaggct gatatgataa
2301 gattcaagga ttatgttgtt tatatagaca agatgttaat gatgaggcag
2351 caattaggat aaatcagaaa taattaaatg cattaataaa gaataaccta
2401 ttaagtggca tttttgtaaa taagaatgtt cccccgatat gttcccccaa
2451 atgctctggc tctcaaaact cttatgaatt gggggaactg ggggaacata
2501 tatagtagaa ggtcctatgg ttagattcgc cacgtggcgg ccatccgtta
2551 taatattac